g.arboreum_cottongen_reftransV1_0017722, g.arboreum_cottongen_reftransV1_0017722 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0017722
Unique Name	g.arboreum_cottongen_reftransV1_0017722
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1847

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr11	chromosome	g.arboreum_cottongen_reftransV1_0017722:1..1847 . Chr11:63024917..63028626 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: A0A072V293_MEDTR (Acyl-CoA-binding domain protein OS=Medicago truncatula GN=MTR_3g491870 PE=4 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 7.668e-133
Identity = 239/359 (66.57%), Postives = 282/359 (78.55%), Query Frame = 3

Query:  228 DWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSN-VQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAM-GKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQRAGKVE 1298
            DWQ LLQSIF+GLIFSYLLAKLIS+VVSF ++NL+ITR  + N V  ++        S+P     H    +++SV+AE GSIR ES   GD   DDD   WEGVE TELD+AFSAATAFVAAAAADRLSQKV N+VQLQLYGLYKIATEGPC+  QPS LKMTARAKWQAW KLGAMPPEDAMQKYID+V+ELYP+W  G+ +  K G     S + +GPMGPVFSSFVYEEE  +D KMDAIH FAREGD+ NLLK IESGVSV+L+DSEGRTP+HWAVDRGHL + E L+ RNA+VNAKDN+GQTPLHYAV CERE IA++LVK +AD  ++DNDG+S  D+C S WP++Q   +V+
Sbjct:    6 DWQSLLQSIFIGLIFSYLLAKLISIVVSFNNENLTITRNTNPNAVVSHDDTKQDDVVSDP----GHRPEAEAESVMAEQGSIRNESVDGGDDDYDDD---WEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTAQPSPLKMTARAKWQAWQKLGAMPPEDAMQKYIDIVSELYPTWLDGAPLRSKTGDGGGPSSEARGPMGPVFSSFVYEEECGSDSKMDAIHGFAREGDMTNLLKCIESGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGRNADVNAKDNDGQTPLHYAVTCEREAIAEYLVKHSADIHSEDNDGSSSRDICSSKWPFMQHEEEVK 357

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: V4KYU6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10014004mg PE=4 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 2.053e-132
Identity = 228/355 (64.23%), Postives = 283/355 (79.72%), Query Frame = 3

Query:  222 MADWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSNVQG-YEKIDDS-GSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQ 1280
            M DW QL QS+ LGLIF+YLLAKLIS++V+FKD+NLS+TR   +  +  Y K++ S G G E            +DS+VAE GS+R + D D D  DDD    WEGVE TELD+AFSAATAFVAAAA+DRLSQKV N++QLQLYG YKIATEGPCTAPQPSALKMTARAKWQAW KLGAMPPE+AM+KYID+VT+LYP+W  G + G+  + +AS  + +  MGPVFSS VYEEESEN+LK+DA+H FAREG+++NLLK IE+G+ V+ +DSEGRTP+HWA+DRGHL +A+AL+ + A+VNAKDNEGQT LHYAVMCERE +A+FLV+Q AD   KD DGNSP+DLC+S W +++
Sbjct:    1 MGDWYQLAQSVILGLIFAYLLAKLISILVAFKDENLSLTRNHETQSENDYRKVESSTGIGGE------------TDSLVAEQGSLRGDEDDDDDDEDDD----WEGVESTELDEAFSAATAFVAAAASDRLSQKVSNDLQLQLYGFYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAWVEGGSKGRNRSGDASGSNSRAAMGPVFSSLVYEEESENELKIDAVHAFAREGEVENLLKCIENGIPVNARDSEGRTPLHWAIDRGHLNVAKALVDKKADVNAKDNEGQTSLHYAVMCEREALAEFLVEQKADTTIKDEDGNSPLDLCESEWSFMR 339

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: A0A0D3AMG1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 3.237e-132
Identity = 224/354 (63.28%), Postives = 275/354 (77.68%), Query Frame = 3

Query:  228 DWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITR---ARSSNVQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQ 1280
            DW QL QS+  GLIF+YLLAKLIS++V+FKDDNLS+TR   A  S  + Y K+D S                ++DS+VAE GS+R + D D D         WEGVE TELD+AFSAATAFVAAAA+DRLSQKV NE+QLQLYG YKIATEG CTAPQPSALKMTARAKWQAW K+GAMP E+AM+KYID+VT LYP+W  G + G+    +A+  + + PMGPVFSS VYEEES+N+LK+DA+H FAREG+++NLLK IESG+ V+ +DSEGRTP+HWA+DRGHL +A+AL+ +NA+VNAKDNEGQT LHYAV+CERE +A+FLVKQ AD   KD DGNSP+DLC+S W W++
Sbjct:    4 DWFQLAQSLIFGLIFAYLLAKLISILVAFKDDNLSLTRSHDAAQSENEYYRKVDSSAG--------------ETDSLVAEQGSLRGDEDDDDD---------WEGVESTELDEAFSAATAFVAAAASDRLSQKVSNELQLQLYGFYKIATEGACTAPQPSALKMTARAKWQAWQKMGAMPAEEAMEKYIDLVTHLYPAWVEGGSKGRNRTGDAAGSNSRAPMGPVFSSLVYEEESDNELKIDAVHAFAREGEVENLLKCIESGIPVNARDSEGRTPLHWAIDRGHLNVAKALVDKNADVNAKDNEGQTALHYAVVCEREALAEFLVKQKADTSIKDEDGNSPLDLCESEWSWMR 334

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: I3SFA2_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 9.682e-132
Identity = 237/359 (66.02%), Postives = 282/359 (78.55%), Query Frame = 3

Query:  228 DWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSN-VQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAM-GKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWLQRAGKVE 1298
            DWQ LLQSIF+GLIFSYLLAKLIS+VVSF ++NL+ITR  + N V  ++        S+P     H    +++SV+AE GSIR+ES   GD   DDD   WEGVE TELD+AFSAATAFVAAAAADRLSQKV N+VQLQLYGLYKIATEGPC+  QPS LKMTARAKWQAW KLGAMPPEDAMQKYID+V+ELYP+W  G+ +  K G     S + +GPMGPVFSSFVYEEE  +D KMDAIH FAREGD+ NLLK IESGVSV+L+DSEGRTP+HWAVDRGHL + E L+ +NA+VNAKDN+GQTPLHYAV CERE IA++LVK +AD  ++DNDG+S  D+C   WP++Q   +V+
Sbjct:    6 DWQSLLQSIFIGLIFSYLLAKLISIVVSFNNENLTITRNTNPNAVVSHDDTKQDDVVSDP----GHRPEAEAESVMAEQGSIRSESVDGGDDDYDDD---WEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTAQPSPLKMTARAKWQAWRKLGAMPPEDAMQKYIDIVSELYPTWLDGAPLRSKTGDGGGPSSEARGPMGPVFSSFVYEEECGSDSKMDAIHGFAREGDMTNLLKCIESGVSVNLKDSEGRTPLHWAVDRGHLNVTELLVGKNADVNAKDNDGQTPLHYAVTCEREAIAEYLVKHSADIHSEDNDGSSSRDICSFKWPFMQHEEEVK 357

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Match: R0GMU2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10026721mg PE=4 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 1.590e-131
Identity = 231/352 (65.62%), Postives = 280/352 (79.55%), Query Frame = 3

Query:  222 MADWQQLLQSIFLGLIFSYLLAKLISLVVSFKDDNLSITRARSSNVQGYEKIDDSGSGSEPIGSTEHLGLHKSDSVVAELGSIRAESXXXXXXXXXXXXXXWEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGADNASSKDVKGPMGPXXXXXXXXXXXXNDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDLCDSGWPWL 1277
            M DW Q  QS+ LGLIF+YLLAKLIS++V+FKD+NLS+TR  S+  + YE +    S +   G TE        S+VAE GS+R E D D    +DDDD  WEGVE TELD+AFSAATAFVAAAA+DRLSQKV NE QLQLYGLYKIATEGPCTAPQPSA+KMTARAKWQAW KLGAMPPE+AM+KYID+VT+LYP+W     +  G      + D  GPMGPVFSS VYEEESEN+LK+DAIH FAREG+++NLLK +E+G+ V+ +DSEGRTP+HWA+DRGH+ +A+AL+ +NA+VNAKDNEGQT LHYAV+CERE IA++LVKQ AD   KD+DGNSP+DLC+S WPW+
Sbjct:    1 MGDWYQFAQSVILGLIFAYLLAKLISILVAFKDENLSLTRDHSTESE-YENLRKVESSTGIGGETE--------SLVAEQGSLRGEEDDDESDDEDDDD--WEGVESTELDEAFSAATAFVAAAASDRLSQKVSNEFQLQLYGLYKIATEGPCTAPQPSAIKMTARAKWQAWQKLGAMPPEEAMEKYIDLVTQLYPAW-----VDAGSKKKNRTGDAPGPMGPVFSSLVYEEESENELKIDAIHAFAREGEVENLLKCLENGIPVNARDSEGRTPLHWAIDRGHMNVAKALIDQNADVNAKDNEGQTSLHYAVVCEREAIAEYLVKQKADTTIKDDDGNSPLDLCESEWPWM 336

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ACBP3_ARATH (Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.182e-16
Identity = 45/106 (42.45%), Postives = 71/106 (66.98%), Query Frame = 3

Query:  525 WEGVECTELDDXXXXXXXXXXXXXXDRLSQKVPNEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWA-AGSAMGK 839
            WEG+E +EL+ AF+AA   +  +     ++++  E +++L+GL+KIATEG C   QP A+ ++ARAKW AW KLG M  E+AM++Y+ +V++  P    AG  +GK
Sbjct:  223 WEGIERSELEKAFAAAVNLLEESGK---AEEIGAEAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIPGLTKAGHTVGK 325

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ECI2_RAT (Enoyl-CoA delta isomerase 2, mitochondrial OS=Rattus norvegicus GN=Eci2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.119e-15
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 3

Query:  603 RLSQKVP-NEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGAD 851
            +L +K P NEV+L+LY LYK ATEGPCT P+P       +AKW AW+ LG++P E A Q Y+D+V+ L  S +  S+ GKGGAD
Sbjct:   49 KLLKKDPGNEVKLRLYALYKQATEGPCTMPKPGVFDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSS-SEASSQGKGGAD 131

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ECI2_MOUSE (Enoyl-CoA delta isomerase 2, mitochondrial OS=Mus musculus GN=Eci2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.467e-15
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 3

Query:  603 RLSQKVP-NEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYIDVVTELYPSWAAGSAMGKGGADNAS--SKDV 872
            +L +K P NEV+L+LY LYK ATEGPC  P+P  L    +AKW AW+ LG++P E A Q Y+D+V+ L  S  A S  GK GAD  +  SKD+
Sbjct:   49 KLLKKDPGNEVKLRLYALYKQATEGPCNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVDLVSSLSSSSEAPS-QGKRGADEKARESKDI 140

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKR1_BOVIN (Ankyrin repeat domain-containing protein 1 OS=Bos taurus GN=ANKRD1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.548e-14
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 3

Query:  933 LKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDL 1253
            L+  AIH  +R G LD L   +  G  +  +D    TP+H AV  GH + AE L++  A++NAKD EG TPLH AV   R  + + L+   AD + K+  G +P+DL
Sbjct:  185 LESTAIHWASRGGSLDVLKLLLNKGAKISARDKLLSTPLHVAVRTGHYECAEHLIACEADLNAKDREGDTPLHDAVRLNRYKMIRLLITYGADLNVKNCAGKTPMDL 291

HSP 2 Score: 66.6254 bits (161), Expect = 1.645e-10
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 3

Query:  927 NDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            ++ K  A+H    EG L  + K IE+G  +  +D    T +HWA   G L + + LL++ A ++A+D    TPLH AV     + A+ L+   AD + KD +G++P+
Sbjct:  150 DEYKRTALHRACLEGHLAIVEKLIEAGAQIEFRDMLESTAIHWASRGGSLDVLKLLLNKGAKISARDKLLSTPLHVAVRTGHYECAEHLIACEADLNAKDREGDTPL 256

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: EM506_ARATH (Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.199e-13
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 3

Query:  963 REGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDL 1253
            +E  + +LL+    G + HLQD +G  P+H+AV  G L+  + L   N +VN  DNEG TPLH AV     DI K L+   ADK  +  DG   +DL
Sbjct:  197 KEAVISHLLRK---GANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVDVNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDL 290

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKR1_CHICK (Ankyrin repeat domain-containing protein 1 OS=Gallus gallus GN=ANKRD1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.247e-13
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 3

Query:  927 NDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            N+ K  A+H    EG L+ + K +E+G  + L+D    T +HWA   G+L+I + LL +  N NA+D    TPLH AV   + D A+ L+   AD + KD +G++P+
Sbjct:  150 NEYKRTALHRACSEGHLEVVKKLVEAGALLELKDMLESTALHWACRGGNLEIVKFLLDKGINRNARDKLRSTPLHVAVRTGQHDCAEHLIACEADLNAKDREGDTPM 256

HSP 2 Score: 70.4774 bits (171), Expect = 8.578e-12
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 3

Query:  933 LKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDL 1253
            L+  A+H   R G+L+ +   ++ G++ + +D    TP+H AV  G    AE L++  A++NAKD EG TP+H AV   R  + + L+   AD   K+ DG +P+DL
Sbjct:  185 LESTALHWACRGGNLEIVKFLLDKGINRNARDKLRSTPLHVAVRTGQHDCAEHLIACEADLNAKDREGDTPMHDAVRLNRYKMVRLLILYGADLTIKNVDGKTPMDL 291

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKR1_PIG (Ankyrin repeat domain-containing protein 1 OS=Sus scrofa GN=ANKRD1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.805e-13
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3

Query:  933 LKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDL 1253
            L+  AIH  +R G+LD L   +  G  +  +D    T +H AV  GH + AE L++  A++NAKD EG TPLH AV   R  + + L+   AD + K+  G +P+DL
Sbjct:  185 LESTAIHWASRGGNLDVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPLHDAVRLNRYKMIRLLITYGADLNVKNCAGKTPMDL 291

HSP 2 Score: 63.5438 bits (153), Expect = 1.307e-9
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 3

Query:  927 NDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            ++ K  A+H    EG L  + K IE+G  +  +D    T +HWA   G+L + + LL++ A ++A+D    T LH AV     + A+ L+   AD + KD +G++P+
Sbjct:  150 DEYKRTALHRACLEGHLAIVEKLIEAGAQIEFRDMLESTAIHWASRGGNLDVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPL 256

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKR1_HUMAN (Ankyrin repeat domain-containing protein 1 OS=Homo sapiens GN=ANKRD1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.060e-13
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3

Query:  933 LKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDL 1253
            L+  AIH  +R G+LD L   +  G  +  +D    T +H AV  GH + AE L++  A++NAKD EG TPLH AV   R  + + L+   AD + K+  G +P+DL
Sbjct:  185 LESTAIHWASRGGNLDVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPLHDAVRLNRYKMIRLLIMYGADLNIKNCAGKTPMDL 291

HSP 2 Score: 62.3882 bits (150), Expect = 3.813e-9
Identity = 34/107 (31.78%), Postives = 59/107 (55.14%), Query Frame = 3

Query:  927 NDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            ++ K  A+H    EG L  + K +E+G  +  +D    T +HWA   G+L + + LL++ A ++A+D    T LH AV     + A+ L+   AD + KD +G++P+
Sbjct:  150 DEYKRTALHRACLEGHLAIVEKLMEAGAQIEFRDMLESTAIHWASRGGNLDVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPL 256

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ECI2_HUMAN (Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.090e-13
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 3

Query:  603 RLSQKVP-NEVQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWHKLGAMPPEDAMQKYID 788
            +L +K P NEV+L+LY LYK ATEGPC  P+P    +  +AKW AW+ LG++P E A Q Y+D
Sbjct:   51 KLLKKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVD 113

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Match: ANKR1_RAT (Ankyrin repeat domain-containing protein 1 OS=Rattus norvegicus GN=Ankrd1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.419e-13
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 3

Query:  933 LKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPVDL 1253
            L+  AIH   R G+LD L   +  G  +  +D    T +H AV  GH + AE L++  A++NAKD EG TPLH AV   R  + + L+   AD + K+  G +P+DL
Sbjct:  185 LESTAIHWACRGGNLDVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPLHDAVRLNRYKMIRLLMTFGADLNVKNCAGKTPMDL 291

HSP 2 Score: 62.7734 bits (151), Expect = 2.316e-9
Identity = 34/107 (31.78%), Postives = 59/107 (55.14%), Query Frame = 3

Query:  927 NDLKMDAIHTFAREGDLDNLLKSIESGVSVHLQDSEGRTPMHWAVDRGHLKIAEALLSRNANVNAKDNEGQTPLHYAVMCEREDIAKFLVKQNADKDTKDNDGNSPV 1247
            ++ K  A+H    EG L  + K +E+G  +  +D    T +HWA   G+L + + LL++ A ++A+D    T LH AV     + A+ L+   AD + KD +G++P+
Sbjct:  150 DEYKRTALHRACLEGHLAIVEKLMEAGAQIEFRDMLESTAIHWACRGGNLDVLKLLLNKGAKISARDKLLSTALHVAVRTGHYECAEHLIACEADLNAKDREGDTPL 256

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A072V293_MEDTR	7.668e-133	66.57	Acyl-CoA-binding domain protein OS=Medicago trunca...	[more]
V4KYU6_EUTSA	2.053e-132	64.23	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
A0A0D3AMG1_BRAOL	3.237e-132	63.28	Uncharacterized protein OS=Brassica oleracea var. ...	[more]
I3SFA2_MEDTR	9.682e-132	66.02	Uncharacterized protein OS=Medicago truncatula PE=...	[more]
R0GMU2_9BRAS	1.590e-131	65.63	Uncharacterized protein OS=Capsella rubella GN=CAR...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0017722 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
ACBP3_ARATH	3.182e-16	42.45	Acyl-CoA-binding domain-containing protein 3 OS=Ar...	[more]
ECI2_RAT	2.119e-15	52.38	Enoyl-CoA delta isomerase 2, mitochondrial OS=Ratt...	[more]
ECI2_MOUSE	3.467e-15	50.54	Enoyl-CoA delta isomerase 2, mitochondrial OS=Mus ...	[more]
ANKR1_BOVIN	3.548e-14	40.19	Ankyrin repeat domain-containing protein 1 OS=Bos ...	[more]
EM506_ARATH	1.199e-13	41.24	Ankyrin repeat domain-containing protein EMB506, c...	[more]
ANKR1_CHICK	2.247e-13	37.38	Ankyrin repeat domain-containing protein 1 OS=Gall...	[more]
ANKR1_PIG	2.805e-13	39.25	Ankyrin repeat domain-containing protein 1 OS=Sus ...	[more]
ANKR1_HUMAN	4.060e-13	39.25	Ankyrin repeat domain-containing protein 1 OS=Homo...	[more]
ECI2_HUMAN	6.090e-13	52.38	Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo...	[more]
ANKR1_RAT	9.419e-13	39.25	Ankyrin repeat domain-containing protein 1 OS=Ratt...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	PRINTS	PR01415	ANKYRIN	coord: 339..353 score: 27.44 coord: 291..306 score: 37.48
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 323..352 e-value: 2.5E-4 score: 30.4 coord: 290..319 e-value: 3.5E-7 score: 39.9
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 290..322 score: 14.88
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 323..355 score: 12.957
IPR000582	Acyl-CoA-binding protein, ACBP	PRINTS	PR00689	ACOABINDINGP	coord: 152..170 score: 48.12 coord: 196..213 score: 37.3 coord: 175..190 score: 36.31
IPR000582	Acyl-CoA-binding protein, ACBP	PFAM	PF00887	ACBP	coord: 131..214 e-value: 3.3E-27 score: 94.3
IPR000582	Acyl-CoA-binding protein, ACBP	PROSITE	PS51228	ACB_2	coord: 129..219 score: 42.478
IPR000582	Acyl-CoA-binding protein, ACBP	SUPERFAMILY	47027	Acyl-CoA binding protein	coord: 129..217
None	No IPR available	PFAM	PF13637	Ank_4	coord: 292..344 e-value: 2.3E-13 score: 50.2
None	No IPR available	PANTHER	PTHR24119	FAMILY NOT NAMED	coord: 104..374 coord: 7..83
None	No IPR available	PANTHER	PTHR24119:SF0	ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6	coord: 104..374 coord: 7..83
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..29
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 51..378
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 30..50
IPR020683	Ankyrin repeat-containing domain	GENE3D	1.25.40.20		coord: 254..364 e-value: 1.7E-32 score: 111.7
IPR020683	Ankyrin repeat-containing domain	PROSITE	PS50297	ANK_REP_REGION	coord: 257..363 score: 32.041
IPR020683	Ankyrin repeat-containing domain	SUPERFAMILY	48403	Ankyrin repeat	coord: 255..367
IPR014352	FERM/acyl-CoA-binding protein, 3-helical bundle	GENE3D	1.20.80.10		coord: 128..219 e-value: 6.8E-30 score: 102.4

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0017722 ID=g.arboreum_cottongen_reftransV1_0017722; Name=g.arboreum_cottongen_reftransV1_0017722; organism=Gossypium arboreum; type=contig; length=1847bp
GAGATTACTACACCTTTGGTTTGGTTTCTCCGGCGCCAATGTTTTCTAAA
CAATAATATACAAAATTAAAGGGAAAAAGAGGAAATTTTTATCTTCTTCA
ATTTCCGACAAGATTTATAGGGTTTTAGCTTAACTACGATGCAAAGATGC
TTCATTTCTAGTGTTTGTGTTTTTTAGGGTTGGATTTTGATTTTATGTCT
GGGTTTTGGTTGATTGATTCCATGGCTGACTGGCAACAGCTTTTGCAATC
GATTTTCTTAGGTCTTATATTCTCTTATCTTCTAGCGAAGCTAATCTCCT
TAGTCGTTTCTTTCAAAGACGATAACCTTTCGATAACCCGAGCCCGAAGC
AGCAATGTCCAGGGCTACGAGAAAATCGACGATTCGGGTTCCGGATCCGA
ACCGATTGGAAGTACTGAGCACTTGGGACTGCACAAGTCGGATTCGGTAG
TCGCAGAATTGGGAAGTATTAGGGCCGAGAGTGATGGCGATGGTGATGGC
GTGGATGATGACGACGACGACGATTGGGAAGGGGTGGAGTGTACGGAACT
GGATGATGCTTTCAGTGCGGCAACGGCGTTCGTGGCGGCTGCCGCGGCTG
ATCGGTTGTCGCAGAAGGTTCCGAACGAGGTGCAGTTGCAGCTTTACGGT
TTGTACAAGATTGCCACCGAAGGGCCTTGCACTGCTCCGCAGCCTTCCGC
TTTGAAAATGACGGCTCGTGCTAAGTGGCAAGCATGGCACAAATTGGGTG
CTATGCCTCCAGAGGATGCAATGCAGAAATACATTGATGTTGTGACAGAG
CTATATCCATCTTGGGCTGCTGGTTCAGCTATGGGCAAAGGTGGGGCTGA
TAATGCTTCAAGTAAAGATGTCAAAGGACCAATGGGACCGGTTTTCAGCT
CTTTTGTGTATGAAGAGGAATCTGAAAATGATTTGAAAATGGATGCTATC
CACACTTTTGCCAGAGAAGGAGATCTGGATAATTTGCTTAAAAGCATTGA
AAGTGGTGTTTCTGTGCATTTGCAAGACAGTGAAGGGAGGACCCCGATGC
ATTGGGCTGTAGATCGTGGCCATCTTAAAATTGCCGAAGCACTTCTTAGC
AGGAATGCTAATGTGAATGCTAAGGACAATGAAGGTCAAACCCCATTGCA
CTATGCTGTTATGTGTGAGAGGGAAGACATTGCCAAATTTCTTGTAAAAC
AAAATGCAGACAAAGATACGAAGGATAACGACGGCAACTCTCCAGTCGAC
CTGTGTGACTCAGGTTGGCCTTGGTTGCAACGTGCAGGCAAAGTGGAATG
ACCTTTGTTTTATTCCCAAGTTTGGTTTCAGTTAAAAAGTACTTGAAAAA
ATTTCTCATGGATGTATATGGGTATAAGCAACCTTTTGCACTTCTTTCCT
TAGTTATATGCTAATGTGGGGTACTCTGATGTTCATTGGCCTCACCTCCT
TAAGTACTGCTTTCTTTACCACCATAAGTAGATGGAAAAGAATTGGAAGG
TGGCTTTAGCCGGTGAAATGGAATTCTGATACCATCATTTGTTTGGATAG
AGTCTAGAGGTATGTAGCCGGACATGGCCAGAGAAGTTGGATGCTACTCT
TCAAAGGGATCCAATGCGGGCAGTGCAGTGAACCTAATTAGTTGTTTGAT
CTGATGGTAGATATGATAAACCGTAGATTCCATCACCCTAAATCTGTTCC
CATCAAACGGAGGCTCCGTCACCCTAAAAACTGATGTAATTTCACAATAT
AAACGGGCAAACTGCTTAAGATTACTTATCCTGCTTCACTAAAAAGTTTC
TACTGCCTGATGAAGATGTCATGATCAAAACTTTGCCTCTTATCTTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR000582	Acyl-CoA-binding_protein
IPR020683	Ankyrin_rpt-contain_dom
IPR014352	FERM/acyl-CoA-bd_prot_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0000062	fatty-acyl-CoA binding

Search form

g.arboreum_cottongen_reftransV1_0017722, g.arboreum_cottongen_reftransV1_0017722 (contig) Gossypium arboreum

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