g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003724
Unique Nameg.arboreum_cottongen_reftransV1_0003724
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length367
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeg.arboreum_cottongen_reftransV1_0003724:1..367 .
Chr3:36904638..36905185 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A068U3C2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00040104001 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.729e-46
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQ--AATLTICPS 361
            SDED++G+ NGRKKLRL+K QS+LLEESFKQHSTLNPKQKQ LAR+LNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A P +MQ  AATLT+CPS
Sbjct:  124 SDEDDDGS-NGRKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPLYMQLPAATLTMCPS 243
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: W9RI15_9ROSA (Homeobox-leucine zipper protein HAT22 OS=Morus notabilis GN=L484_007767 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.205e-46
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL KE+QELKALKLA   + HM AATLT+CPS
Sbjct:  156 SDEDEDGT-NARKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELKALKLAQPLYMHMPAATLTMCPS 275
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: V4M1V8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000281mg PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.817e-46
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQKQ LARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDEN RLQKE+QELK LKL+ HPF  HM A+TLT+CPS
Sbjct:  133 HSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELKTLKLSHHPFYMHMPASTLTMCPS 223
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: I1LH34_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.242e-46
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFH--MQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL+KE+QELKALKL A P +  M AATLT+CPS
Sbjct:  128 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKL-AQPLYMPMPAATLTMCPS 247
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: C6TNV3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.781e-46
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFH--MQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL+KE+QELKALKL A P +  M AATLT+CPS
Sbjct:  128 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKL-AQPLYMPMPAATLTMCPS 247
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.090e-32
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA--------HPFHMQAATLTICPS 268
            HSTLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTEVDCE+LK+  E L DEN+RL+KE+ +L+ALK A          P    AATLT+CPS
Sbjct:  134 HSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPS 230
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.090e-32
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA--------HPFHMQAATLTICPS 268
            HSTLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTEVDCE+LK+  E L DEN+RL+KE+ +L+ALK A          P    AATLT+CPS
Sbjct:  134 HSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPS 230
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.862e-32
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = -1 
Query:    5 TLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA----HPFHMQ---AATLTICP 262
            TL PKQK+ALA +L L+PRQVEVWFQNRRARTKLKQTE++CE+LK+C+ +LT+ENRRLQ+EV+EL+A+++A      P   Q   A+ LT+CP
Sbjct:   99 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCP 191
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.862e-32
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = -1 
Query:    5 TLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA----HPFHMQ---AATLTICP 262
            TL PKQK+ALA +L L+PRQVEVWFQNRRARTKLKQTE++CE+LK+C+ +LT+ENRRLQ+EV+EL+A+++A      P   Q   A+ LT+CP
Sbjct:   99 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCP 191
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.128e-31
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELK-ALKLAAHPF-------HMQAATLT---ICPS 268
            HSTL PKQK  LA +LNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+C E LT ENRRLQ+EV EL+ AL+     +       H+ AA  T   +CPS
Sbjct:  172 HSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPS 271
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068U3C2_COFCA2.729e-4684.43Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
W9RI15_9ROSA3.205e-4685.95Homeobox-leucine zipper protein HAT22 OS=Morus not... [more]
V4M1V8_EUTSA3.817e-4685.71Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
I1LH34_SOYBN8.242e-4686.07Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6TNV3_SOYBN9.781e-4686.07Putative uncharacterized protein OS=Glycine max PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HOX2_ORYSJ1.090e-3265.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI1.090e-3265.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX3_ORYSJ1.862e-3262.37Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI1.862e-3262.37Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX7_ORYSI7.128e-3163.00Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..56
NoneNo IPR availableGENE3D1.20.5.170coord: 20..52
e-value: 7.5E-4
score: 19.0
NoneNo IPR availablePANTHERPTHR24326:SF227HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22coord: 1..72
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 1..72
IPR003106Leucine zipper, homeobox-associatedSMARTSM00340halzcoord: 20..63
e-value: 1.5E-22
score: 91.0
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 20..54
e-value: 5.0E-12
score: 45.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 1..18
e-value: 7.6E-6
score: 25.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 1..20
score: 10.544
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 2..19
e-value: 1.6E-6
score: 27.4
IPR009057Homeodomain-likeSUPERFAMILY46689Homeodomain-likecoord: 1..29

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003724 ID=g.arboreum_cottongen_reftransV1_0003724; Name=g.arboreum_cottongen_reftransV1_0003724; organism=Gossypium arboreum; type=contig; length=367bp
AAGACGGACATATGGTGAGGGTAGCCGCTTGCATGTGAAACGGATGAGCT
GCTAATTTCAGTGCTTTGAGTTCTTGAACTTCTTTTTGTAGTCTCCTGTT
TTCATCTGTTAATGTCTCGTAACATTTTTTTAAAAACTCACAGTCCACTT
CAGTTTGCTTCAGCTTTGTCCTTGCTCTCCTGTTTTGAAACCATACTTCA
ACTTGTCTAGGTTTCAAGTTTAATTGCCTTGCTAATGCTTGTTTTTGCTT
GGGATTGAGAGTGCTGTGTTGTTTAAAGCTTTCTTCAAGAAGGGAAGATT
GTTCTTTAGAGAGACGAAGTTTCTTTCTTCCATTAACAGTACCTTCTTCA
TCTTCATCACTGCTAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003106Leu_zip_homeo
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription