g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003724
Unique Name	g.arboreum_cottongen_reftransV1_0003724
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	367

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0003724:1..367 . Chr3:36904638..36905185 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A068U3C2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00040104001 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.729e-46
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQ--AATLTICPS 361
            SDED++G+ NGRKKLRL+K QS+LLEESFKQHSTLNPKQKQ LAR+LNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A P +MQ  AATLT+CPS
Sbjct:  124 SDEDDDGS-NGRKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPLYMQLPAATLTMCPS 243

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: W9RI15_9ROSA (Homeobox-leucine zipper protein HAT22 OS=Morus notabilis GN=L484_007767 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.205e-46
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL KE+QELKALKLA   + HM AATLT+CPS
Sbjct:  156 SDEDEDGT-NARKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELKALKLAQPLYMHMPAATLTMCPS 275

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: V4M1V8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000281mg PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.817e-46
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQKQ LARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDEN RLQKE+QELK LKL+ HPF  HM A+TLT+CPS
Sbjct:  133 HSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELKTLKLSHHPFYMHMPASTLTMCPS 223

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: I1LH34_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.242e-46
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFH--MQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL+KE+QELKALKL A P +  M AATLT+CPS
Sbjct:  128 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKL-AQPLYMPMPAATLTMCPS 247

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: C6TNV3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.781e-46
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFH--MQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL+KE+QELKALKL A P +  M AATLT+CPS
Sbjct:  128 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKL-AQPLYMPMPAATLTMCPS 247

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.336e-39
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAA---TLTICPS 268
            H TLNP+QK  LA+QL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQKEVQEL+ALKL +   +M  +   TLT+CPS
Sbjct:  101 HPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPS 192

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.365e-39
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAA---TLTICPS 268
            H TLNP+QK  LA+QL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQKEVQEL+ALKL +   +M  +   TLT+CPS
Sbjct:  101 HPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPS 192

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.693e-39
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQ-AATLTICPS 268
            HSTLNPKQK ALA+QLNL+ RQVEVWFQNRRARTKLKQTEVDCE+LK+C + LT+ENRRLQKEV EL+ALKL+ H + HM    TLT+CPS
Sbjct:  182 HSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMTPPTTLTMCPS 272

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.797e-39
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAA---TLTICPS 268
            HSTLNPKQKQALA+QL L+ RQVEVWFQNRRARTKLKQTEVDCEFL++C E LT+ENRRLQKEV EL+ALKL+   F+M  +   TLT+CPS
Sbjct:  148 HSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQ-FYMHMSPPTTLTMCPS 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.346e-37
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLA-AHPFHMQ------AATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLT+ENRRL +E+Q+L+AL  + A  F M       AATL+ICPS
Sbjct:  113 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPS 208

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.377e-37
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLA-AHPFHMQ------AATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLT+ENRRL +E+Q+L+AL  + A  F M       AATL+ICPS
Sbjct:  113 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPS 208

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.031e-35
Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQE---LKALKLAAHPFHMQAA------TLTICPS 268
            H+TLNPKQK ALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLTDENRRL +E+QE   LK    AA P H+  A      TLT+CPS
Sbjct:  176 HNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPS 273

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.031e-35
Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQE---LKALKLAAHPFHMQAA------TLTICPS 268
            H+TLNPKQK ALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLTDENRRL +E+QE   LK    AA P H+  A      TLT+CPS
Sbjct:  176 HNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPS 273

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.924e-35
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = -1

Query:    2 SSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQ---AATLTICPS 364
            +SDE+E+G    RKKLRLSK+QS+ LEE+FK+H+TLNPKQK ALA++LNL  RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LT+ENRRLQKE  EL+ LKL+   F+ Q     TL +CPS
Sbjct:  117 TSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQ-FYGQMTPPTTLIMCPS 239

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.852e-34
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQA--ATLTICPS 268
            H+TLNPKQK ALA++L L  RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LT+ENRRL+KE  EL+ALKL+   +   +   TL +CPS
Sbjct:  154 HNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMSPPTTLLMCPS 244

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A068U3C2_COFCA	2.729e-46	84.43	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
W9RI15_9ROSA	3.205e-46	85.95	Homeobox-leucine zipper protein HAT22 OS=Morus not...	[more]
V4M1V8_EUTSA	3.817e-46	85.71	Uncharacterized protein OS=Eutrema salsugineum GN=...	[more]
I1LH34_SOYBN	8.242e-46	86.07	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
C6TNV3_SOYBN	9.781e-46	86.07	Putative uncharacterized protein OS=Glycine max PE...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
HOX17_ORYSJ	1.336e-39	73.91	Homeobox-leucine zipper protein HOX17 OS=Oryza sat...	[more]
HOX17_ORYSI	1.365e-39	73.91	Homeobox-leucine zipper protein HOX17 OS=Oryza sat...	[more]
ATHB4_ARATH	6.693e-39	75.82	Homeobox-leucine zipper protein ATHB-4 OS=Arabidop...	[more]
HAT4_ARATH	8.797e-39	75.00	Homeobox-leucine zipper protein HAT4 OS=Arabidopsi...	[more]
HOX15_ORYSJ	1.346e-37	71.88	Homeobox-leucine zipper protein HOX15 OS=Oryza sat...	[more]
HOX15_ORYSI	1.377e-37	71.88	Homeobox-leucine zipper protein HOX15 OS=Oryza sat...	[more]
HOX1_ORYSJ	1.031e-35	72.45	Homeobox-leucine zipper protein HOX1 OS=Oryza sati...	[more]
HOX1_ORYSI	1.031e-35	72.45	Homeobox-leucine zipper protein HOX1 OS=Oryza sati...	[more]
HAT2_ARATH	3.924e-35	67.74	Homeobox-leucine zipper protein HAT2 OS=Arabidopsi...	[more]
HAT1_ARATH	5.852e-34	67.03	Homeobox-leucine zipper protein HAT1 OS=Arabidopsi...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..56
None	No IPR available	GENE3D	1.20.5.170		coord: 20..52 e-value: 7.5E-4 score: 19.0
None	No IPR available	PANTHER	PTHR24326:SF227	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22	coord: 1..72
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 1..72
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 20..63 e-value: 1.5E-22 score: 91.0
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 20..54 e-value: 5.0E-12 score: 45.7
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 1..18 e-value: 7.6E-6 score: 25.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 1..20 score: 10.544
IPR009057	Homeodomain-like	GENE3D	1.10.10.60		coord: 2..19 e-value: 1.6E-6 score: 27.4
IPR009057	Homeodomain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 1..29

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003724 ID=g.arboreum_cottongen_reftransV1_0003724; Name=g.arboreum_cottongen_reftransV1_0003724; organism=Gossypium arboreum; type=contig; length=367bp
AAGACGGACATATGGTGAGGGTAGCCGCTTGCATGTGAAACGGATGAGCT
GCTAATTTCAGTGCTTTGAGTTCTTGAACTTCTTTTTGTAGTCTCCTGTT
TTCATCTGTTAATGTCTCGTAACATTTTTTTAAAAACTCACAGTCCACTT
CAGTTTGCTTCAGCTTTGTCCTTGCTCTCCTGTTTTGAAACCATACTTCA
ACTTGTCTAGGTTTCAAGTTTAATTGCCTTGCTAATGCTTGTTTTTGCTT
GGGATTGAGAGTGCTGTGTTGTTTAAAGCTTTCTTCAAGAAGGGAAGATT
GTTCTTTAGAGAGACGAAGTTTCTTTCTTCCATTAACAGTACCTTCTTCA
TCTTCATCACTGCTAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	DNA-binding transcription factor activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Search form

g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

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