g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003724
Unique Nameg.arboreum_cottongen_reftransV1_0003724
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0003724:1..367 .
Chr3:36904638..36905185 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A068U3C2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_8 OS=Coffea canephora GN=GSCOC_T00040104001 PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.729e-46
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQ--AATLTICPS 361
            SDED++G+ NGRKKLRL+K QS+LLEESFKQHSTLNPKQKQ LAR+LNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A P +MQ  AATLT+CPS
Sbjct:  124 SDEDDDGS-NGRKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPLYMQLPAATLTMCPS 243
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: W9RI15_9ROSA (Homeobox-leucine zipper protein HAT22 OS=Morus notabilis GN=L484_007767 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.205e-46
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL KE+QELKALKLA   + HM AATLT+CPS
Sbjct:  156 SDEDEDGT-NARKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELKALKLAQPLYMHMPAATLTMCPS 275
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: V4M1V8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000281mg PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.817e-46
Identity = 78/91 (85.71%), Postives = 83/91 (91.21%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQKQ LARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDEN RLQKE+QELK LKL+ HPF  HM A+TLT+CPS
Sbjct:  133 HSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENIRLQKEIQELKTLKLSHHPFYMHMPASTLTMCPS 223
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: I1LH34_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.242e-46
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFH--MQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL+KE+QELKALKL A P +  M AATLT+CPS
Sbjct:  128 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKL-AQPLYMPMPAATLTMCPS 247
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: C6TNV3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.781e-46
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFH--MQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL+KE+QELKALKL A P +  M AATLT+CPS
Sbjct:  128 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKL-AQPLYMPMPAATLTMCPS 247
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.051e-48
Identity = 99/124 (79.84%), Postives = 112/124 (90.32%), Query Frame = -1 
Query:    2 LSSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 367
            +S D D+E  V+ RKKLRL+K+QS+LLE++FK HSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+Q+LKALKL + PF  HM AATLT+CPS
Sbjct:  112 VSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKL-SQPFYMHMPAATLTMCPS 234
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.400e-43
Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQKQ LARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETL DEN RLQKE+QELK LKL   PF  HM A+TLT CPS
Sbjct:  132 HSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKL-TQPFYMHMPASTLTKCPS 221
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.145e-43
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKL-------AAH--------PFHMQ--AATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQ+E+QEL+ALK        AAH        PF+MQ  AATLTICPS
Sbjct:  146 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPS 251
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.145e-43
Identity = 78/106 (73.58%), Postives = 86/106 (81.13%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKL-------AAH--------PFHMQ--AATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQ+E+QEL+ALK        AAH        PF+MQ  AATLTICPS
Sbjct:  146 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPS 251
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.678e-42
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE+LK+C ETLT+ENRRLQKE+ EL+ALK   HPF  H+ A TL++CPS
Sbjct:  109 HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALK-TVHPFYMHLPATTLSMCPS 198
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.135e-42
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE+LK+C ETLT+ENRRLQKE+ EL+ALK   HPF  H+ A TL++CPS
Sbjct:  196 HSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALK-TVHPFYMHLPATTLSMCPS 285
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.229e-41
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQ--AATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE+LK+C E+LT+ENRRLQKEV+EL+ LK +  PF+MQ  A TLT+CPS
Sbjct:  209 HSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTST-PFYMQLPATTLTMCPS 298
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 3.999e-41
Identity = 71/91 (78.02%), Postives = 80/91 (87.91%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQ-AATLTICPS 268
            HSTLNPKQK ALA+QLNL+ RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LTDENRRLQKEV EL+ALKL+ H + HM+   TLT+CPS
Sbjct:  181 HSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPHLYMHMKPPTTLTMCPS 271
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.426e-40
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE+LK+C ETLT+ENRRL KE+ EL+ALK  A PF  H+ A TL++CPS
Sbjct:  193 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALK-TARPFYMHLPATTLSMCPS 282
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.518e-40
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE+LK+C ETLT+ENRRL KE+ EL+ALK  A PF  H+ A TL++CPS
Sbjct:  193 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALK-TARPFYMHLPATTLSMCPS 282
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068U3C2_COFCA2.729e-4684.43Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
W9RI15_9ROSA3.205e-4685.95Homeobox-leucine zipper protein HAT22 OS=Morus not... [more]
V4M1V8_EUTSA3.817e-4685.71Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
I1LH34_SOYBN8.242e-4686.07Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
C6TNV3_SOYBN9.781e-4686.07Putative uncharacterized protein OS=Glycine max PE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HAT22_ARATH5.051e-4879.84Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT9_ARATH1.400e-4383.52Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX19_ORYSJ7.145e-4373.58Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI7.145e-4373.58Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX11_ORYSI5.678e-4278.02Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSJ8.135e-4278.02Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HAT14_ARATH2.229e-4178.02Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HAT3_ARATH3.999e-4178.02Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]
HOX27_ORYSJ1.426e-4076.92Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI1.518e-4076.92Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..56
NoneNo IPR availableGENE3D1.20.5.170coord: 20..52
e-value: 7.5E-4
score: 19.0
NoneNo IPR availablePANTHERPTHR24326:SF227HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22coord: 1..72
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 1..72
IPR003106Leucine zipper, homeobox-associatedSMARTSM00340halzcoord: 20..63
e-value: 1.5E-22
score: 91.0
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 20..54
e-value: 5.0E-12
score: 45.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 1..18
e-value: 7.6E-6
score: 25.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 1..20
score: 10.544
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 2..19
e-value: 1.6E-6
score: 27.4
IPR009057Homeodomain-likeSUPERFAMILY46689Homeodomain-likecoord: 1..29

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003724 ID=g.arboreum_cottongen_reftransV1_0003724; Name=g.arboreum_cottongen_reftransV1_0003724; organism=Gossypium arboreum; type=contig; length=367bp
AAGACGGACATATGGTGAGGGTAGCCGCTTGCATGTGAAACGGATGAGCT
GCTAATTTCAGTGCTTTGAGTTCTTGAACTTCTTTTTGTAGTCTCCTGTT
TTCATCTGTTAATGTCTCGTAACATTTTTTTAAAAACTCACAGTCCACTT
CAGTTTGCTTCAGCTTTGTCCTTGCTCTCCTGTTTTGAAACCATACTTCA
ACTTGTCTAGGTTTCAAGTTTAATTGCCTTGCTAATGCTTGTTTTTGCTT
GGGATTGAGAGTGCTGTGTTGTTTAAAGCTTTCTTCAAGAAGGGAAGATT
GTTCTTTAGAGAGACGAAGTTTCTTTCTTCCATTAACAGTACCTTCTTCA
TCTTCATCACTGCTAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003106Leu_zip_homeo
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription