g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003724
Unique Nameg.arboreum_cottongen_reftransV1_0003724
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length367
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr3chromosomeg.arboreum_cottongen_reftransV1_0003724:1..367 .
Chr3:36904638..36905185 -		n/a
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0B0PM63_GOSAR (Homeobox-leucine zipper HAT22-like protein OS=Gossypium arboreum GN=F383_03944 PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.227e-47
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            S+EDE+G VN RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  126 SEEDEDG-VNARKKLRLTKDQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 245
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0B2PZB4_GLYSO (Homeobox-leucine zipper protein HAT22 OS=Glycine soja GN=glysoja_027312 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.466e-47
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFH--MQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL+KE+QELKALKL A P +  M AATLT+CPS
Sbjct:   14 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKL-AQPLYMPMPAATLTMCPS 133
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A067GGG6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022713mg PE=4 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.556e-47
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQAATLTICPS 364
            +SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL KE+QELKALKLA   + HM AATLT+CPS
Sbjct:  137 ASDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELKALKLAQPLYMHMPAATLTMCPS 257
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: V4SKM0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026197mg PE=4 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.556e-47
Identity = 105/122 (86.07%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQAATLTICPS 364
            +SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRL KE+QELKALKLA   + HM AATLT+CPS
Sbjct:  137 ASDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELKALKLAQPLYMHMPAATLTMCPS 257
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A5B626_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0732g00010 PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.921e-47
Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQ--AATLTICPS 361
            SDEDE+G+ NGRKKLRL+KEQS+LLEESFKQHSTLNPKQKQALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC E+LTDENRRLQKE+QELKALKL A P +MQ  AATLT+CPS
Sbjct:  129 SDEDEDGS-NGRKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLTDENRRLQKELQELKALKL-AQPLYMQLPAATLTMCPS 248
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: M5WC80_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009614mg PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.419e-46
Identity = 104/121 (85.95%), Postives = 113/121 (93.39%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQAATLTICPS 361
            SDEDE+G+ N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL+   + HM AATLT+CPS
Sbjct:  130 SDEDEDGS-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYMHMPAATLTMCPS 249
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0B0PLD6_GOSAR (Homeobox-leucine zipper HAT22-like protein OS=Gossypium arboreum GN=F383_08039 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.475e-46
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+K+QS+LLEESFKQHSTLNP QKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQKE+QEL++LK AA PF  +M AATLT+CPS
Sbjct:  131 SDEDEDG-VNARKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTNENRRLQKELQELRSLKTAAQPFCMNMPAATLTMCPS 251
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: B9H6N8_POPTR (Homeobox-leucine zipper protein HAT9 OS=Populus trichocarpa GN=POPTR_0005s19080g PE=4 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.587e-46
Identity = 105/122 (86.07%), Postives = 112/122 (91.80%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHS LNPKQK+ALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC E LTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  112 SDEDEDGT-NARKKLRLTKEQSALLEESFKQHSNLNPKQKEALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEALTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 231
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0D2S7K1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G057100 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.713e-46
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+K+QS+LLEESFKQHSTLNP QKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQKE+QEL++LK AA PF  +M AATLT+CPS
Sbjct:  131 SDEDEDG-VNARKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTNENRRLQKELQELRSLKTAAQPFCMNMPAATLTMCPS 251
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: B9HFT7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s14590g PE=4 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.740e-46
Identity = 103/122 (84.43%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G+ N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTE+DCEFLKKC ETLTDENRRLQKE+Q+LK+LK+ A PF  HM AATLT+CPS
Sbjct:  119 SDEDEDGS-NARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCETLTDENRRLQKELQDLKSLKM-AQPFYMHMPAATLTMCPS 238
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.090e-32
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA--------HPFHMQAATLTICPS 268
            HSTLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTEVDCE+LK+  E L DEN+RL+KE+ +L+ALK A          P    AATLT+CPS
Sbjct:  134 HSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPS 230
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.090e-32
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA--------HPFHMQAATLTICPS 268
            HSTLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTEVDCE+LK+  E L DEN+RL+KE+ +L+ALK A          P    AATLT+CPS
Sbjct:  134 HSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPS 230
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.862e-32
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = -1 
Query:    5 TLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA----HPFHMQ---AATLTICP 262
            TL PKQK+ALA +L L+PRQVEVWFQNRRARTKLKQTE++CE+LK+C+ +LT+ENRRLQ+EV+EL+A+++A      P   Q   A+ LT+CP
Sbjct:   99 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCP 191
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.862e-32
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = -1 
Query:    5 TLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA----HPFHMQ---AATLTICP 262
            TL PKQK+ALA +L L+PRQVEVWFQNRRARTKLKQTE++CE+LK+C+ +LT+ENRRLQ+EV+EL+A+++A      P   Q   A+ LT+CP
Sbjct:   99 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCP 191
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.128e-31
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELK-ALKLAAHPF-------HMQAATLT---ICPS 268
            HSTL PKQK  LA +LNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+C E LT ENRRLQ+EV EL+ AL+     +       H+ AA  T   +CPS
Sbjct:  172 HSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPS 271
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PM63_GOSAR3.227e-4786.07Homeobox-leucine zipper HAT22-like protein OS=Goss... [more]
A0A0B2PZB4_GLYSO4.466e-4786.07Homeobox-leucine zipper protein HAT22 OS=Glycine s... [more]
A0A067GGG6_CITSI5.556e-4786.07Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4SKM0_9ROSI5.556e-4786.07Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A5B626_VITVI5.921e-4786.07Putative uncharacterized protein OS=Vitis vinifera... [more]
M5WC80_PRUPE1.419e-4685.95Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0B0PLD6_GOSAR1.475e-4683.61Homeobox-leucine zipper HAT22-like protein OS=Goss... [more]
B9H6N8_POPTR1.587e-4686.07Homeobox-leucine zipper protein HAT9 OS=Populus tr... [more]
A0A0D2S7K1_GOSRA1.713e-4683.61Uncharacterized protein OS=Gossypium raimondii GN=... [more]
B9HFT7_POPTR1.740e-4684.43Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HOX2_ORYSJ1.090e-3265.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI1.090e-3265.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX3_ORYSJ1.862e-3262.37Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI1.862e-3262.37Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX7_ORYSI7.128e-3163.00Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..56
NoneNo IPR availableGENE3D1.20.5.170coord: 20..52
e-value: 7.5E-4
score: 19.0
NoneNo IPR availablePANTHERPTHR24326:SF227HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22coord: 1..72
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 1..72
IPR003106Leucine zipper, homeobox-associatedSMARTSM00340halzcoord: 20..63
e-value: 1.5E-22
score: 91.0
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 20..54
e-value: 5.0E-12
score: 45.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 1..18
e-value: 7.6E-6
score: 25.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 1..20
score: 10.544
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 2..19
e-value: 1.6E-6
score: 27.4
IPR009057Homeodomain-likeSUPERFAMILY46689Homeodomain-likecoord: 1..29

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003724 ID=g.arboreum_cottongen_reftransV1_0003724; Name=g.arboreum_cottongen_reftransV1_0003724; organism=Gossypium arboreum; type=contig; length=367bp
AAGACGGACATATGGTGAGGGTAGCCGCTTGCATGTGAAACGGATGAGCT
GCTAATTTCAGTGCTTTGAGTTCTTGAACTTCTTTTTGTAGTCTCCTGTT
TTCATCTGTTAATGTCTCGTAACATTTTTTTAAAAACTCACAGTCCACTT
CAGTTTGCTTCAGCTTTGTCCTTGCTCTCCTGTTTTGAAACCATACTTCA
ACTTGTCTAGGTTTCAAGTTTAATTGCCTTGCTAATGCTTGTTTTTGCTT
GGGATTGAGAGTGCTGTGTTGTTTAAAGCTTTCTTCAAGAAGGGAAGATT
GTTCTTTAGAGAGACGAAGTTTCTTTCTTCCATTAACAGTACCTTCTTCA
TCTTCATCACTGCTAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003106Leu_zip_homeo
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription