g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0003724
Unique Nameg.arboreum_cottongen_reftransV1_0003724
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length367
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0003724:1..367 .
Chr3:36904638..36905185 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0B0NF71_GOSAR (Homeobox-leucine zipper HAT22-like protein OS=Gossypium arboreum GN=F383_01656 PE=4 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.158e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = -1 
Query:    2 LSSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 367
            LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS
Sbjct:   80 LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 201
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0D2QF32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G033400 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 6.269e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = -1 
Query:    2 LSSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 367
            LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS
Sbjct:   80 LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 201
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0D2RC10_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G086700 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.952e-50
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALA+QLNL PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKLAA PF  HM AATLT+CPS
Sbjct:  126 SDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAAQPFYMHMPAATLTMCPS 246
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: E2FGB7_GOSHI (Homeodomain-leucine zipper protein HD4 OS=Gossypium hirsutum GN=HB4 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.212e-50
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALA+QLNL PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKLAA PF  HM AATLT+CPS
Sbjct:  126 SDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAAQPFYMHMPAATLTMCPS 246
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0B0MG26_GOSAR (Homeobox-leucine zipper HAT22-like protein OS=Gossypium arboreum GN=F383_37142 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.212e-50
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALA+QLNL PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKLAA PF  HM AATLT+CPS
Sbjct:  126 SDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAAQPFYMHMPAATLTMCPS 246
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A061DHW3_THECC (Homeodomain-leucine zipper protein HD4 OS=Theobroma cacao GN=TCM_000867 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.456e-48
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALARQL+L+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  130 SDEDEDG-VNARKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 249
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A067KJY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12590 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.070e-47
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  134 SDEDEDGT-NTRKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 253
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: B9SX72_RICCO (Homeobox protein, putative OS=Ricinus communis GN=RCOM_0858310 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.101e-47
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  133 SDEDEDGT-NTRKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 252
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A059ALZ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00660 PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.983e-47
Identity = 106/123 (86.18%), Postives = 114/123 (92.68%), Query Frame = -1 
Query:    2 SSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 364
            +SDED++G  N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  104 ASDEDDDG-ANARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 224
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0D2SIG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G228000 PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.868e-47
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = -1 
Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            S+EDE+G VN RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  126 SEEDEDG-VNARKKLRLTKDQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 245
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.090e-32
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA--------HPFHMQAATLTICPS 268
            HSTLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTEVDCE+LK+  E L DEN+RL+KE+ +L+ALK A          P    AATLT+CPS
Sbjct:  134 HSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPS 230
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.090e-32
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA--------HPFHMQAATLTICPS 268
            HSTLNPKQK ALA +L L+PRQVEVWFQNRRARTKLKQTEVDCE+LK+  E L DEN+RL+KE+ +L+ALK A          P    AATLT+CPS
Sbjct:  134 HSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLRALKAAPSPASASAMQPSSSAAATLTMCPS 230
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.862e-32
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = -1 
Query:    5 TLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA----HPFHMQ---AATLTICP 262
            TL PKQK+ALA +L L+PRQVEVWFQNRRARTKLKQTE++CE+LK+C+ +LT+ENRRLQ+EV+EL+A+++A      P   Q   A+ LT+CP
Sbjct:   99 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCP 191
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.862e-32
Identity = 58/93 (62.37%), Postives = 76/93 (81.72%), Query Frame = -1 
Query:    5 TLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAA----HPFHMQ---AATLTICP 262
            TL PKQK+ALA +L L+PRQVEVWFQNRRARTKLKQTE++CE+LK+C+ +LT+ENRRLQ+EV+EL+A+++A      P   Q   A+ LT+CP
Sbjct:   99 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCP 191
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX7_ORYSI (Homeobox-leucine zipper protein HOX7 OS=Oryza sativa subsp. indica GN=HOX7 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.128e-31
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = -1 
Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELK-ALKLAAHPF-------HMQAATLT---ICPS 268
            HSTL PKQK  LA +LNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+C E LT ENRRLQ+EV EL+ AL+     +       H+ AA  T   +CPS
Sbjct:  172 HSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGALRTTTSSYPPLYGLHHLPAAAGTVFRVCPS 271
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NF71_GOSAR5.158e-64100.00Homeobox-leucine zipper HAT22-like protein OS=Goss... [more]
A0A0D2QF32_GOSRA6.269e-64100.00Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RC10_GOSRA7.952e-5088.52Uncharacterized protein OS=Gossypium raimondii GN=... [more]
E2FGB7_GOSHI8.212e-5088.52Homeodomain-leucine zipper protein HD4 OS=Gossypiu... [more]
A0A0B0MG26_GOSAR8.212e-5088.52Homeobox-leucine zipper HAT22-like protein OS=Goss... [more]
A0A061DHW3_THECC8.456e-4886.89Homeodomain-leucine zipper protein HD4 OS=Theobrom... [more]
A0A067KJY1_JATCU1.070e-4788.52Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9SX72_RICCO1.101e-4788.52Homeobox protein, putative OS=Ricinus communis GN=... [more]
A0A059ALZ2_EUCGR1.983e-4786.18Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A0D2SIG9_GOSRA2.868e-4786.07Uncharacterized protein OS=Gossypium raimondii GN=... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HOX2_ORYSJ1.090e-3265.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX2_ORYSI1.090e-3265.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HOX3_ORYSJ1.862e-3262.37Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI1.862e-3262.37Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX7_ORYSI7.128e-3163.00Homeobox-leucine zipper protein HOX7 OS=Oryza sati... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..56
NoneNo IPR availableGENE3D1.20.5.170coord: 20..52
e-value: 7.5E-4
score: 19.0
NoneNo IPR availablePANTHERPTHR24326:SF227HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22coord: 1..72
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 1..72
IPR003106Leucine zipper, homeobox-associatedSMARTSM00340halzcoord: 20..63
e-value: 1.5E-22
score: 91.0
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 20..54
e-value: 5.0E-12
score: 45.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 1..18
e-value: 7.6E-6
score: 25.5
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 1..20
score: 10.544
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 2..19
e-value: 1.6E-6
score: 27.4
IPR009057Homeodomain-likeSUPERFAMILY46689Homeodomain-likecoord: 1..29

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0003724 ID=g.arboreum_cottongen_reftransV1_0003724; Name=g.arboreum_cottongen_reftransV1_0003724; organism=Gossypium arboreum; type=contig; length=367bp
AAGACGGACATATGGTGAGGGTAGCCGCTTGCATGTGAAACGGATGAGCT
GCTAATTTCAGTGCTTTGAGTTCTTGAACTTCTTTTTGTAGTCTCCTGTT
TTCATCTGTTAATGTCTCGTAACATTTTTTTAAAAACTCACAGTCCACTT
CAGTTTGCTTCAGCTTTGTCCTTGCTCTCCTGTTTTGAAACCATACTTCA
ACTTGTCTAGGTTTCAAGTTTAATTGCCTTGCTAATGCTTGTTTTTGCTT
GGGATTGAGAGTGCTGTGTTGTTTAAAGCTTTCTTCAAGAAGGGAAGATT
GTTCTTTAGAGAGACGAAGTTTCTTTCTTCCATTAACAGTACCTTCTTCA
TCTTCATCACTGCTAAG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003106Leu_zip_homeo
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription