g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0003724
Unique Name	g.arboreum_cottongen_reftransV1_0003724
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr3	chromosome	g.arboreum_cottongen_reftransV1_0003724:1..367 . Chr3:36904638..36905185 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0B0NF71_GOSAR (Homeobox-leucine zipper HAT22-like protein OS=Gossypium arboreum GN=F383_01656 PE=4 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 5.158e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = -1

Query:    2 LSSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 367
            LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS
Sbjct:   80 LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0D2QF32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G033400 PE=4 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 6.269e-64
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = -1

Query:    2 LSSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 367
            LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS
Sbjct:   80 LSSDEDEEGTVNGRKKLRLSKEQSSLLEESFKQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAATLTICPS 201

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0D2RC10_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G086700 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.952e-50
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALA+QLNL PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKLAA PF  HM AATLT+CPS
Sbjct:  126 SDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAAQPFYMHMPAATLTMCPS 246

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: E2FGB7_GOSHI (Homeodomain-leucine zipper protein HD4 OS=Gossypium hirsutum GN=HB4 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.212e-50
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALA+QLNL PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKLAA PF  HM AATLT+CPS
Sbjct:  126 SDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAAQPFYMHMPAATLTMCPS 246

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0B0MG26_GOSAR (Homeobox-leucine zipper HAT22-like protein OS=Gossypium arboreum GN=F383_37142 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.212e-50
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALA+QLNL PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKLAA PF  HM AATLT+CPS
Sbjct:  126 SDEDEDG-VNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAAQPFYMHMPAATLTMCPS 246

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A061DHW3_THECC (Homeodomain-leucine zipper protein HD4 OS=Theobroma cacao GN=TCM_000867 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 8.456e-48
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+G VN RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALARQL+L+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  130 SDEDEDG-VNARKKLRLTKDQSALLEESFKQHSTLNPKQKQALARQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 249

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A067KJY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12590 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.070e-47
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  134 SDEDEDGT-NTRKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 253

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: B9SX72_RICCO (Homeobox protein, putative OS=Ricinus communis GN=RCOM_0858310 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.101e-47
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            SDEDE+GT N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  133 SDEDEDGT-NTRKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 252

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A059ALZ2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I00660 PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.983e-47
Identity = 106/123 (86.18%), Postives = 114/123 (92.68%), Query Frame = -1

Query:    2 SSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 364
            +SDED++G  N RKKLRL+KEQS+LLEESFKQHSTLNPKQKQALARQLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  104 ASDEDDDG-ANARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 224

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Match: A0A0D2SIG9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G228000 PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.868e-47
Identity = 105/122 (86.07%), Postives = 114/122 (93.44%), Query Frame = -1

Query:    2 SDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF--HMQAATLTICPS 361
            S+EDE+G VN RKKLRL+K+QS+LLEESFKQHSTLNPKQKQALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCEFLKKC ETLTDENRRLQKE+QELKALKL A PF  HM AATLT+CPS
Sbjct:  126 SEEDEDG-VNARKKLRLTKDQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKL-AQPFYMHMPAATLTMCPS 245

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.336e-39
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAA---TLTICPS 268
            H TLNP+QK  LA+QL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQKEVQEL+ALKL +   +M  +   TLT+CPS
Sbjct:  101 HPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPS 192

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.365e-39
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAA---TLTICPS 268
            H TLNP+QK  LA+QL L+PRQVEVWFQNRRARTKLKQTEVDCEFLK+C ETLT+ENRRLQKEVQEL+ALKL +   +M  +   TLT+CPS
Sbjct:  101 HPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALKLVSPHLYMNMSPPTTLTMCPS 192

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: ATHB4_ARATH (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana GN=ATHB-4 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.693e-39
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPF-HMQ-AATLTICPS 268
            HSTLNPKQK ALA+QLNL+ RQVEVWFQNRRARTKLKQTEVDCE+LK+C + LT+ENRRLQKEV EL+ALKL+ H + HM    TLT+CPS
Sbjct:  182 HSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSPHLYMHMTPPTTLTMCPS 272

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.797e-39
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQAA---TLTICPS 268
            HSTLNPKQKQALA+QL L+ RQVEVWFQNRRARTKLKQTEVDCEFL++C E LT+ENRRLQKEV EL+ALKL+   F+M  +   TLT+CPS
Sbjct:  148 HSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQ-FYMHMSPPTTLTMCPS 238

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.346e-37
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLA-AHPFHMQ------AATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLT+ENRRL +E+Q+L+AL  + A  F M       AATL+ICPS
Sbjct:  113 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPS 208

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSI (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. indica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.377e-37
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLA-AHPFHMQ------AATLTICPS 268
            HSTLNPKQK ALA+QLNL+PRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLT+ENRRL +E+Q+L+AL  + A  F M       AATL+ICPS
Sbjct:  113 HSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPS 208

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.031e-35
Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQE---LKALKLAAHPFHMQAA------TLTICPS 268
            H+TLNPKQK ALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLTDENRRL +E+QE   LK    AA P H+  A      TLT+CPS
Sbjct:  176 HNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPS 273

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.031e-35
Identity = 71/98 (72.45%), Postives = 77/98 (78.57%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQE---LKALKLAAHPFHMQAA------TLTICPS 268
            H+TLNPKQK ALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCE LK+C ETLTDENRRL +E+QE   LK    AA P H+  A      TLT+CPS
Sbjct:  176 HNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDENRRLHRELQELRALKLATAAAAPHHLYGARVPPPTTLTMCPS 273

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT2_ARATH (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana GN=HAT2 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.924e-35
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = -1

Query:    2 SSDEDEEGTVNGXXXXXXXXXXXXXXXXXXXQHSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQ---AATLTICPS 364
            +SDE+E+G    RKKLRLSK+QS+ LEE+FK+H+TLNPKQK ALA++LNL  RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LT+ENRRLQKE  EL+ LKL+   F+ Q     TL +CPS
Sbjct:  117 TSDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQ-FYGQMTPPTTLIMCPS 239

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Match: HAT1_ARATH (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana GN=HAT1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.852e-34
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = -1

Query:    2 HSTLNPKQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQKEVQELKALKLAAHPFHMQA--ATLTICPS 268
            H+TLNPKQK ALA++L L  RQVEVWFQNRRARTKLKQTEVDCE+LK+C E LT+ENRRL+KE  EL+ALKL+   +   +   TL +CPS
Sbjct:  154 HNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMSPPTTLLMCPS 244

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NF71_GOSAR	5.158e-64	100.00	Homeobox-leucine zipper HAT22-like protein OS=Goss...	[more]
A0A0D2QF32_GOSRA	6.269e-64	100.00	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2RC10_GOSRA	7.952e-50	88.52	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
E2FGB7_GOSHI	8.212e-50	88.52	Homeodomain-leucine zipper protein HD4 OS=Gossypiu...	[more]
A0A0B0MG26_GOSAR	8.212e-50	88.52	Homeobox-leucine zipper HAT22-like protein OS=Goss...	[more]
A0A061DHW3_THECC	8.456e-48	86.89	Homeodomain-leucine zipper protein HD4 OS=Theobrom...	[more]
A0A067KJY1_JATCU	1.070e-47	88.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ...	[more]
B9SX72_RICCO	1.101e-47	88.52	Homeobox protein, putative OS=Ricinus communis GN=...	[more]
A0A059ALZ2_EUCGR	1.983e-47	86.18	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A0D2SIG9_GOSRA	2.868e-47	86.07	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]

Pages

BLAST of g.arboreum_cottongen_reftransV1_0003724 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
HOX17_ORYSJ	1.336e-39	73.91	Homeobox-leucine zipper protein HOX17 OS=Oryza sat...	[more]
HOX17_ORYSI	1.365e-39	73.91	Homeobox-leucine zipper protein HOX17 OS=Oryza sat...	[more]
ATHB4_ARATH	6.693e-39	75.82	Homeobox-leucine zipper protein ATHB-4 OS=Arabidop...	[more]
HAT4_ARATH	8.797e-39	75.00	Homeobox-leucine zipper protein HAT4 OS=Arabidopsi...	[more]
HOX15_ORYSJ	1.346e-37	71.88	Homeobox-leucine zipper protein HOX15 OS=Oryza sat...	[more]
HOX15_ORYSI	1.377e-37	71.88	Homeobox-leucine zipper protein HOX15 OS=Oryza sat...	[more]
HOX1_ORYSJ	1.031e-35	72.45	Homeobox-leucine zipper protein HOX1 OS=Oryza sati...	[more]
HOX1_ORYSI	1.031e-35	72.45	Homeobox-leucine zipper protein HOX1 OS=Oryza sati...	[more]
HAT2_ARATH	3.924e-35	67.74	Homeobox-leucine zipper protein HAT2 OS=Arabidopsi...	[more]
HAT1_ARATH	5.852e-34	67.03	Homeobox-leucine zipper protein HAT1 OS=Arabidopsi...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..56
None	No IPR available	GENE3D	1.20.5.170		coord: 20..52 e-value: 7.5E-4 score: 19.0
None	No IPR available	PANTHER	PTHR24326:SF227	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22	coord: 1..72
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 1..72
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 20..63 e-value: 1.5E-22 score: 91.0
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 20..54 e-value: 5.0E-12 score: 45.7
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 1..18 e-value: 7.6E-6 score: 25.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 1..20 score: 10.544
IPR009057	Homeodomain-like	GENE3D	1.10.10.60		coord: 2..19 e-value: 1.6E-6 score: 27.4
IPR009057	Homeodomain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 1..29

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0003724 ID=g.arboreum_cottongen_reftransV1_0003724; Name=g.arboreum_cottongen_reftransV1_0003724; organism=Gossypium arboreum; type=contig; length=367bp
AAGACGGACATATGGTGAGGGTAGCCGCTTGCATGTGAAACGGATGAGCT
GCTAATTTCAGTGCTTTGAGTTCTTGAACTTCTTTTTGTAGTCTCCTGTT
TTCATCTGTTAATGTCTCGTAACATTTTTTTAAAAACTCACAGTCCACTT
CAGTTTGCTTCAGCTTTGTCCTTGCTCTCCTGTTTTGAAACCATACTTCA
ACTTGTCTAGGTTTCAAGTTTAATTGCCTTGCTAATGCTTGTTTTTGCTT
GGGATTGAGAGTGCTGTGTTGTTTAAAGCTTTCTTCAAGAAGGGAAGATT
GTTCTTTAGAGAGACGAAGTTTCTTTCTTCCATTAACAGTACCTTCTTCA
TCTTCATCACTGCTAAG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	DNA-binding transcription factor activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of DNA-templated transcription

Search form

g.arboreum_cottongen_reftransV1_0003724, g.arboreum_cottongen_reftransV1_0003724 (contig) Gossypium arboreum

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