g.arboreum_cottongen_reftransV1_0005970, g.arboreum_cottongen_reftransV1_0005970 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: U7DY87_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0290s00240g PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.351e-24 Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTA-GSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ N E+T+LL +KQQLGNPPSI SWNSSSSPC+W + C GSV+ LHL DKNI TIP ++CDLKNLTFL+++ N IPG FP LY+C+KLQ+L++SQN+ Sbjct: 28 VISQDAN-TEKTILLKLKQQLGNPPSIQSWNSSSSPCNWTGVTCGGDGSVSELHLGDKNITETIPATVCDLKNLTFLEMNFNHIPGGFPKVLYSCTKLQHLDLSQNF 133
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9HE15_POPTR (Leucine-rich repeat family protein OS=Populus trichocarpa GN=POPTR_0006s25210g PE=4 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 4.476e-24 Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTA-GSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ N E+T+LL +KQQLGNPPSI SWNSSSSPC+W + C GSV+ LHL DKNI TIP ++CDLKNLTFL+++ N IPG FP LY+C+KLQ+L++SQN+ Sbjct: 28 VISQDAN-TEKTILLKLKQQLGNPPSIQSWNSSSSPCNWTGVTCGGDGSVSELHLGDKNITETIPATVCDLKNLTFLEMNFNHIPGGFPKVLYSCTKLQHLDLSQNF 133
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A067KGR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07749 PE=4 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.269e-24 Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ+ N E+T+LL ++++LGNPP + SWNSSS PC+W + C +VTGL L D NI TIP +ICDLKNL LDLSLN+IPG FP+ LYNCSKLQ+L++SQNY Sbjct: 27 VISQNAN-TEQTILLKLRRELGNPPLLESWNSSSPPCNWKGVQCIGNTVTGLVLSDVNITVTIPATICDLKNLISLDLSLNYIPGTFPTVLYNCSKLQHLDLSQNY 131
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: R0H8H2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000132mg PE=4 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.861e-24 Identity = 58/106 (54.72%), Postives = 82/106 (77.36%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 ++SQ+ N+R+ LLN+K+ LG+P S+ WN++SSPCDWP I CTAG+VT ++ +++N T+P +ICD NL FLDLS N GEFP+ LYNC+KL+YL++SQNY Sbjct: 20 VFSQT---NDRSTLLNLKRVLGDPTSLRQWNNTSSPCDWPLITCTAGNVTEINFQNQNFTGTVPTTICDFPNLQFLDLSYNLFSGEFPTVLYNCTKLKYLDLSQNY 122
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2ZSD1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 7.799e-24 Identity = 56/97 (57.73%), Postives = 77/97 (79.38%), Query Frame = -3 Query: 4 NERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 294 +ER+ LLN+K LG+PPS+ WN++SSPC WP+I C AG VTG++ +++N +P SICD NL FLDLS N+ PGEFP+TLYNC+KL++L++SQN Sbjct: 67 DERSTLLNLKSLLGHPPSLRLWNATSSPCHWPKITCAAGKVTGINFKNQNFTVAVPTSICDFPNLNFLDLSYNYFPGEFPTTLYNCTKLRHLDLSQN 163
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.334e-9 Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = -3 Query: 4 CDWPEIICT--AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C WP IICT VTG++L D I + + L LT+LDLS N I GE P L C L++LN+S N Sbjct: 75 CQWPGIICTPQRSRVTGINLTDSTISGPLFKNFSALTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHN 145
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.594e-7 Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = -3 Query: 4 CDWPEIIC--TAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C W + C + SV L+L N+ I P+I DL+NL +DL N + G+ P + NC+ L YL++S+N Sbjct: 59 CSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSEN 129
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 4.648e-7 Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = -3 Query: 4 CDWPEIICTAGS---VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C+W I CT V+ ++L+ N+ I SICDL LT LDLSLNF P L C L+ LN+S N Sbjct: 62 CNWTGITCTRAPTLYVSSINLQSLNLSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSN 133
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 8.074e-7 Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = -3 Query: 4 CDWPEIICT-AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C+W I C + +V L+ + + P I +LK+L LDLS N G PSTL NC+KL L++S+N Sbjct: 64 CNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005970 ID=g.arboreum_cottongen_reftransV1_0005970; Name=g.arboreum_cottongen_reftransV1_0005970; organism=Gossypium arboreum; type=contig; length=491bpback to top |