g.arboreum_cottongen_reftransV1_0005970, g.arboreum_cottongen_reftransV1_0005970 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005970
Unique Nameg.arboreum_cottongen_reftransV1_0005970
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length491
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0005970:1..491 .
Chr1:3158847..3159337 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: U7DY87_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0290s00240g PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.351e-24
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTA-GSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ  N  E+T+LL +KQQLGNPPSI SWNSSSSPC+W  + C   GSV+ LHL DKNI  TIP ++CDLKNLTFL+++ N IPG FP  LY+C+KLQ+L++SQN+
Sbjct:   28 VISQDAN-TEKTILLKLKQQLGNPPSIQSWNSSSSPCNWTGVTCGGDGSVSELHLGDKNITETIPATVCDLKNLTFLEMNFNHIPGGFPKVLYSCTKLQHLDLSQNF 133          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9HE15_POPTR (Leucine-rich repeat family protein OS=Populus trichocarpa GN=POPTR_0006s25210g PE=4 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 4.476e-24
Identity = 66/107 (61.68%), Postives = 84/107 (78.50%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTA-GSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ  N  E+T+LL +KQQLGNPPSI SWNSSSSPC+W  + C   GSV+ LHL DKNI  TIP ++CDLKNLTFL+++ N IPG FP  LY+C+KLQ+L++SQN+
Sbjct:   28 VISQDAN-TEKTILLKLKQQLGNPPSIQSWNSSSSPCNWTGVTCGGDGSVSELHLGDKNITETIPATVCDLKNLTFLEMNFNHIPGGFPKVLYSCTKLQHLDLSQNF 133          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A067KGR1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07749 PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.269e-24
Identity = 64/106 (60.38%), Postives = 82/106 (77.36%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQ+ N  E+T+LL ++++LGNPP + SWNSSS PC+W  + C   +VTGL L D NI  TIP +ICDLKNL  LDLSLN+IPG FP+ LYNCSKLQ+L++SQNY
Sbjct:   27 VISQNAN-TEQTILLKLRRELGNPPLLESWNSSSPPCNWKGVQCIGNTVTGLVLSDVNITVTIPATICDLKNLISLDLSLNYIPGTFPTVLYNCSKLQHLDLSQNY 131          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: R0H8H2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10000132mg PE=4 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.861e-24
Identity = 58/106 (54.72%), Postives = 82/106 (77.36%), Query Frame = -3
Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            ++SQ+   N+R+ LLN+K+ LG+P S+  WN++SSPCDWP I CTAG+VT ++ +++N   T+P +ICD  NL FLDLS N   GEFP+ LYNC+KL+YL++SQNY
Sbjct:   20 VFSQT---NDRSTLLNLKRVLGDPTSLRQWNNTSSPCDWPLITCTAGNVTEINFQNQNFTGTVPTTICDFPNLQFLDLSYNLFSGEFPTVLYNCTKLKYLDLSQNY 122          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2ZSD1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.799e-24
Identity = 56/97 (57.73%), Postives = 77/97 (79.38%), Query Frame = -3
Query:    4 NERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 294
            +ER+ LLN+K  LG+PPS+  WN++SSPC WP+I C AG VTG++ +++N    +P SICD  NL FLDLS N+ PGEFP+TLYNC+KL++L++SQN
Sbjct:   67 DERSTLLNLKSLLGHPPSLRLWNATSSPCHWPKITCAAGKVTGINFKNQNFTVAVPTSICDFPNLNFLDLSYNYFPGEFPTTLYNCTKLRHLDLSQN 163          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.334e-9
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = -3
Query:    4 CDWPEIICT--AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C WP IICT     VTG++L D  I   +  +   L  LT+LDLS N I GE P  L  C  L++LN+S N
Sbjct:   75 CQWPGIICTPQRSRVTGINLTDSTISGPLFKNFSALTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHN 145          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.594e-7
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = -3
Query:    4 CDWPEIIC--TAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C W  + C   + SV  L+L   N+   I P+I DL+NL  +DL  N + G+ P  + NC+ L YL++S+N
Sbjct:   59 CSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSEN 129          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.648e-7
Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = -3
Query:    4 CDWPEIICTAGS---VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C+W  I CT      V+ ++L+  N+   I  SICDL  LT LDLSLNF     P  L  C  L+ LN+S N
Sbjct:   62 CNWTGITCTRAPTLYVSSINLQSLNLSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSN 133          
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 8.074e-7
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = -3
Query:    4 CDWPEIICT-AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C+W  I C  + +V  L+     +   + P I +LK+L  LDLS N   G  PSTL NC+KL  L++S+N
Sbjct:   64 CNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
U7DY87_POPTR3.351e-2461.68Uncharacterized protein (Fragment) OS=Populus tric... [more]
B9HE15_POPTR4.476e-2461.68Leucine-rich repeat family protein OS=Populus tric... [more]
A0A067KGR1_JATCU5.269e-2460.38Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
R0H8H2_9BRAS5.861e-2454.72Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A0D2ZSD1_BRAOL7.799e-2457.73Uncharacterized protein OS=Brassica oleracea var. ... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1743_ARATH2.334e-945.07Probable LRR receptor-like serine/threonine-protei... [more]
ERL1_ARATH1.594e-738.03LRR receptor-like serine/threonine-protein kinase ... [more]
Y5694_ARATH4.648e-743.06Probably inactive leucine-rich repeat receptor-lik... [more]
PEPR1_ARATH8.074e-740.00Leucine-rich repeat receptor-like protein kinase P... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 26..123
e-value: 4.7E-18
score: 64.4
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 26..123
IPR013210Leucine-rich repeat-containing N-terminal, plant-typePFAMPF08263LRRNT_2coord: 27..62
e-value: 3.5E-8
score: 33.4
NoneNo IPR availablePANTHERPTHR27000FAMILY NOT NAMEDcoord: 1..124
NoneNo IPR availablePANTHERPTHR27000:SF78SUBFAMILY NOT NAMEDcoord: 1..124
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..124
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.893
NoneNo IPR availableTMHMMTMhelixcoord: 7..24

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005970 ID=g.arboreum_cottongen_reftransV1_0005970; Name=g.arboreum_cottongen_reftransV1_0005970; organism=Gossypium arboreum; type=contig; length=491bp
ATAGTTTTGAGAAATGTTTAGGTATTGAAGCTTTGAACAATTGTAAAGCG
TACTAGGGAATTCCCCGGGGATGAAATTCAAGGAAAGGTCTAGGAAAGTG
AGGTTTTTGAGGTCACATATCGACGGCGGAATCGTTGTCATGATGTTTTT
GTCACGGAGGTGGAGTCCGGTGACGGAACCGGCGGTGCAGATTATCTCCG
GCCAATCACACGGCGAAGATGATGAGTTCCATGAAGAAATGGACGGTGGA
TTGCCCAGTTGCTGCTTAACGTTGAGAAGAAGGGTTCGTTCATTGTGGTT
TATGGACTGTGAATAAATCACTGTGATGAAGAAGAAGATGAAGAAGAGAA
ATGTGAACCGGGTTTTAGACATGGGAACCGAACTTTAAGGCCGTTTATTT
GTTCCGGTTTGGTTCTGTTTCGCCGGGGAATTTGATCGGGTTTATTCTTA
ACGGTTGCGGGTTTTCAAAGTTTCATTTGTGACTGAGTTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR013210LRR_N_plant-typ