g.arboreum_cottongen_reftransV1_0005970, g.arboreum_cottongen_reftransV1_0005970 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0005970
Unique Name	g.arboreum_cottongen_reftransV1_0005970
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	491

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr1	chromosome	g.arboreum_cottongen_reftransV1_0005970:1..491 . Chr1:3158847..3159337 +		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: D7M4M0_ARALL (Leucine-rich repeat family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489442 PE=4 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.072e-25
Identity = 61/105 (58.10%), Postives = 85/105 (80.95%), Query Frame = -3

Query:    4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318
            ++SQS   N+++ LLNVK+ LG+PPS+  WN++SSPC+W EI CTAG+VTG++ +++N   T+P +ICDL NL FLDLS N+  GEFP+ LYNC+KLQYL++SQN
Sbjct:   20 VFSQS---NDQSTLLNVKRDLGDPPSLQLWNNTSSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQN 121

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2U9V7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G104300 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.537e-25
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = -3

Query:    1 SQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 312
            SQ IN  ERTLLL +KQQL NPPSI SWNSSSSPCDWPEI CTAGSVT +HLRDKNI   +PP+IC LKNLT LDL  NFIPGEFP  LYNCSKLQ L++SQNY
Sbjct:   22 SQDINA-ERTLLLKLKQQLDNPPSIGSWNSSSSPCDWPEINCTAGSVTEVHLRDKNITVRVPPTICGLKNLTVLDLWDNFIPGEFP-ILYNCSKLQVLDLSQNY 123

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: M1ACJ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007634 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.794e-25
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = -3

Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQS    ER  LL +K+Q GNP ++ SWNS+SSPC WPEI C  G VTG+ +++K+I   IP SIC+LKNLTFL+L LN++PG+FP+ LY CS LQ+L++SQNY
Sbjct:   30 VTSQSPATTERDTLLKIKRQWGNPLALDSWNSTSSPCSWPEIECDDGKVTGIIIQEKDITVEIPSSICELKNLTFLNLRLNYLPGKFPTFLYKCSNLQHLDLSQNY 135

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0B0PNP4_GOSAR (Receptor-like protein kinase HSL1 OS=Gossypium arboreum GN=F383_00935 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.359e-25
Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = -3

Query:    1 SQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 312
            SQ IN  ERTLLL +KQQLGNPPSI SWNSSS PC WPEI CT GSVT +HLRDKNI   +PP+ICDLKNLT LDL  NFIPGEFP  LY+CSKL++L++SQNY
Sbjct:   22 SQDINA-ERTLLLKLKQQLGNPPSIGSWNSSSPPCTWPEINCTDGSVTEVHLRDKNITVRVPPTICDLKNLTVLDLCDNFIPGEFP-ILYSCSKLKFLDLSQNY 123

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: M1ACJ1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007634 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.659e-25
Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = -3

Query:    1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318
            + SQS    ER  LL +K+Q GNP ++ SWNS+SSPC WPEI C  G VTG+ +++K+I   IP SIC+LKNLTFL+L LN++PG+FP+ LY CS LQ+L++SQNY
Sbjct:   30 VTSQSPATTERDTLLKIKRQWGNPLALDSWNSTSSPCSWPEIECDDGKVTGIIIQEKDITVEIPSSICELKNLTFLNLRLNYLPGKFPTFLYKCSNLQHLDLSQNY 135

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: W9RMD7_9ROSA (Receptor-like protein kinase HSL1 OS=Morus notabilis GN=L484_005884 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.350e-25
Identity = 65/107 (60.75%), Postives = 87/107 (81.31%), Query Frame = -3

Query:    4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGS--VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318
            + SQS++  ER++LL ++QQ GNPPS+SSWNSSS PCDWPEI C+     VTG+ LR+K+I   IP +ICDLKNLT LDL+LN++PG+FP  LYNCS+L++L++SQN
Sbjct:   27 VISQSLD-TERSILLKLRQQWGNPPSLSSWNSSSLPCDWPEIQCSDDGTVVTGVLLREKDITEKIPATICDLKNLTSLDLALNYVPGDFPKVLYNCSELRFLDLSQN 132

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9DFY2_ARATH (AT5G25930 protein (Fragment) OS=Arabidopsis thaliana GN=At5g25930 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.265e-24
Identity = 59/105 (56.19%), Postives = 84/105 (80.00%), Query Frame = -3

Query:    4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318
            ++SQ    N+++ LLN+K+ LG+PPS+  WN++SSPC+W EI CTAG+VTG++ +++N   T+P +ICDL NL FLDLS N+  GEFP+ LYNC+KLQYL++SQN
Sbjct:   20 VFSQ---FNDQSTLLNLKRDLGDPPSLRLWNNTSSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQN 121

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: Q9XGZ2_ARATH (Leucine-rich repeat receptor-like protein kinase OS=Arabidopsis thaliana GN=T1N24.22 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.377e-24
Identity = 59/105 (56.19%), Postives = 84/105 (80.00%), Query Frame = -3

Query:    4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318
            ++SQ    N+++ LLN+K+ LG+PPS+  WN++SSPC+W EI CTAG+VTG++ +++N   T+P +ICDL NL FLDLS N+  GEFP+ LYNC+KLQYL++SQN
Sbjct:   20 VFSQ---FNDQSTLLNLKRDLGDPPSLRLWNNTSSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQN 121

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A5B6Z0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009349 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.085e-24
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = -3

Query:    1 HNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 297
             +ER++LL+VKQQLGNPPS+ SWNSSSSPCDWPEI CT  +VT + L +K I   IP +ICDLKNL  LDLS N IPGEFP  L NCSKL+YL + QN+
Sbjct:   32 DDERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEIKCTDNTVTAISLHNKAISEKIPATICDLKNLIVLDLSNNDIPGEFPDIL-NCSKLEYLRLLQNF 129

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0A0LRY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373400 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.155e-24
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = -3

Query:    1 SQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 312
            SQ++N ++  +LL++K+Q GNPPS+  WN+SS PCDWPEIIC   +V G+ LR+K I   +P  IC+L+NLT LDLS N+IPGEFP  LYNCSKL+YL++S NY
Sbjct:  115 SQTVNVDQ-AILLDLKEQWGNPPSLWLWNASSLPCDWPEIICRDSTVIGISLRNKTITGKVPTVICNLQNLTVLDLSWNYIPGEFPEVLYNCSKLKYLDLSGNY 217

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.334e-9
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = -3

Query:    4 CDWPEIICT--AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C WP IICT     VTG++L D  I   +  +   L  LT+LDLS N I GE P  L  C  L++LN+S N
Sbjct:   75 CQWPGIICTPQRSRVTGINLTDSTISGPLFKNFSALTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHN 145

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.594e-7
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = -3

Query:    4 CDWPEIIC--TAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C W  + C   + SV  L+L   N+   I P+I DL+NL  +DL  N + G+ P  + NC+ L YL++S+N
Sbjct:   59 CSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSEN 129

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.648e-7
Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = -3

Query:    4 CDWPEIICTAGS---VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C+W  I CT      V+ ++L+  N+   I  SICDL  LT LDLSLNF     P  L  C  L+ LN+S N
Sbjct:   62 CNWTGITCTRAPTLYVSSINLQSLNLSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSN 133

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 8.074e-7
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = -3

Query:    4 CDWPEIICT-AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210
            C+W  I C  + +V  L+     +   + P I +LK+L  LDLS N   G  PSTL NC+KL  L++S+N
Sbjct:   64 CNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
D7M4M0_ARALL	1.072e-25	58.10	Leucine-rich repeat family protein OS=Arabidopsis ...	[more]
A0A0D2U9V7_GOSRA	3.537e-25	76.92	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
M1ACJ0_SOLTU	7.794e-25	57.55	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
A0A0B0PNP4_GOSAR	8.359e-25	74.04	Receptor-like protein kinase HSL1 OS=Gossypium arb...	[more]
M1ACJ1_SOLTU	8.659e-25	57.55	Uncharacterized protein OS=Solanum tuberosum GN=PG...	[more]
W9RMD7_9ROSA	9.350e-25	60.75	Receptor-like protein kinase HSL1 OS=Morus notabil...	[more]
B9DFY2_ARATH	1.265e-24	56.19	AT5G25930 protein (Fragment) OS=Arabidopsis thalia...	[more]
Q9XGZ2_ARATH	1.377e-24	56.19	Leucine-rich repeat receptor-like protein kinase O...	[more]
A5B6Z0_VITVI	2.085e-24	65.66	Putative uncharacterized protein OS=Vitis vinifera...	[more]
A0A0A0LRY8_CUCSA	3.155e-24	58.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
Y1743_ARATH	2.334e-9	45.07	Probable LRR receptor-like serine/threonine-protei...	[more]
ERL1_ARATH	1.594e-7	38.03	LRR receptor-like serine/threonine-protein kinase ...	[more]
Y5694_ARATH	4.648e-7	43.06	Probably inactive leucine-rich repeat receptor-lik...	[more]
PEPR1_ARATH	8.074e-7	40.00	Leucine-rich repeat receptor-like protein kinase P...	[more]

InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 26..123 e-value: 4.7E-18 score: 64.4
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 26..123
IPR013210	Leucine-rich repeat-containing N-terminal, plant-type	PFAM	PF08263	LRRNT_2	coord: 27..62 e-value: 3.5E-8 score: 33.4
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 1..124
None	No IPR available	PANTHER	PTHR27000:SF78	SUBFAMILY NOT NAMED	coord: 1..124
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..16
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..124
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..21
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..21 score: 0.893
None	No IPR available	TMHMM	TMhelix		coord: 7..24

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0005970 ID=g.arboreum_cottongen_reftransV1_0005970; Name=g.arboreum_cottongen_reftransV1_0005970; organism=Gossypium arboreum; type=contig; length=491bp
ATAGTTTTGAGAAATGTTTAGGTATTGAAGCTTTGAACAATTGTAAAGCG
TACTAGGGAATTCCCCGGGGATGAAATTCAAGGAAAGGTCTAGGAAAGTG
AGGTTTTTGAGGTCACATATCGACGGCGGAATCGTTGTCATGATGTTTTT
GTCACGGAGGTGGAGTCCGGTGACGGAACCGGCGGTGCAGATTATCTCCG
GCCAATCACACGGCGAAGATGATGAGTTCCATGAAGAAATGGACGGTGGA
TTGCCCAGTTGCTGCTTAACGTTGAGAAGAAGGGTTCGTTCATTGTGGTT
TATGGACTGTGAATAAATCACTGTGATGAAGAAGAAGATGAAGAAGAGAA
ATGTGAACCGGGTTTTAGACATGGGAACCGAACTTTAAGGCCGTTTATTT
GTTCCGGTTTGGTTCTGTTTCGCCGGGGAATTTGATCGGGTTTATTCTTA
ACGGTTGCGGGTTTTCAAAGTTTCATTTGTGACTGAGTTTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR013210	LRR_N_plant-typ

Search form

g.arboreum_cottongen_reftransV1_0005970, g.arboreum_cottongen_reftransV1_0005970 (contig) Gossypium arboreum

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