g.arboreum_cottongen_reftransV1_0005970, g.arboreum_cottongen_reftransV1_0005970 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: D7M4M0_ARALL (Leucine-rich repeat family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489442 PE=4 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.072e-25 Identity = 61/105 (58.10%), Postives = 85/105 (80.95%), Query Frame = -3 Query: 4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318 ++SQS N+++ LLNVK+ LG+PPS+ WN++SSPC+W EI CTAG+VTG++ +++N T+P +ICDL NL FLDLS N+ GEFP+ LYNC+KLQYL++SQN Sbjct: 20 VFSQS---NDQSTLLNVKRDLGDPPSLQLWNNTSSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQN 121
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2U9V7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G104300 PE=4 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.537e-25 Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = -3 Query: 1 SQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 312 SQ IN ERTLLL +KQQL NPPSI SWNSSSSPCDWPEI CTAGSVT +HLRDKNI +PP+IC LKNLT LDL NFIPGEFP LYNCSKLQ L++SQNY Sbjct: 22 SQDINA-ERTLLLKLKQQLDNPPSIGSWNSSSSPCDWPEINCTAGSVTEVHLRDKNITVRVPPTICGLKNLTVLDLWDNFIPGEFP-ILYNCSKLQVLDLSQNY 123
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: M1ACJ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007634 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 7.794e-25 Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQS ER LL +K+Q GNP ++ SWNS+SSPC WPEI C G VTG+ +++K+I IP SIC+LKNLTFL+L LN++PG+FP+ LY CS LQ+L++SQNY Sbjct: 30 VTSQSPATTERDTLLKIKRQWGNPLALDSWNSTSSPCSWPEIECDDGKVTGIIIQEKDITVEIPSSICELKNLTFLNLRLNYLPGKFPTFLYKCSNLQHLDLSQNY 135
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0B0PNP4_GOSAR (Receptor-like protein kinase HSL1 OS=Gossypium arboreum GN=F383_00935 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.359e-25 Identity = 77/104 (74.04%), Postives = 86/104 (82.69%), Query Frame = -3 Query: 1 SQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 312 SQ IN ERTLLL +KQQLGNPPSI SWNSSS PC WPEI CT GSVT +HLRDKNI +PP+ICDLKNLT LDL NFIPGEFP LY+CSKL++L++SQNY Sbjct: 22 SQDINA-ERTLLLKLKQQLGNPPSIGSWNSSSPPCTWPEINCTDGSVTEVHLRDKNITVRVPPTICDLKNLTVLDLCDNFIPGEFP-ILYSCSKLKFLDLSQNY 123
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: M1ACJ1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007634 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 8.659e-25 Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQS ER LL +K+Q GNP ++ SWNS+SSPC WPEI C G VTG+ +++K+I IP SIC+LKNLTFL+L LN++PG+FP+ LY CS LQ+L++SQNY Sbjct: 30 VTSQSPATTERDTLLKIKRQWGNPLALDSWNSTSSPCSWPEIECDDGKVTGIIIQEKDITVEIPSSICELKNLTFLNLRLNYLPGKFPTFLYKCSNLQHLDLSQNY 135
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: W9RMD7_9ROSA (Receptor-like protein kinase HSL1 OS=Morus notabilis GN=L484_005884 PE=4 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.350e-25 Identity = 65/107 (60.75%), Postives = 87/107 (81.31%), Query Frame = -3 Query: 4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGS--VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318 + SQS++ ER++LL ++QQ GNPPS+SSWNSSS PCDWPEI C+ VTG+ LR+K+I IP +ICDLKNLT LDL+LN++PG+FP LYNCS+L++L++SQN Sbjct: 27 VISQSLD-TERSILLKLRQQWGNPPSLSSWNSSSLPCDWPEIQCSDDGTVVTGVLLREKDITEKIPATICDLKNLTSLDLALNYVPGDFPKVLYNCSELRFLDLSQN 132
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9DFY2_ARATH (AT5G25930 protein (Fragment) OS=Arabidopsis thaliana GN=At5g25930 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.265e-24 Identity = 59/105 (56.19%), Postives = 84/105 (80.00%), Query Frame = -3 Query: 4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318 ++SQ N+++ LLN+K+ LG+PPS+ WN++SSPC+W EI CTAG+VTG++ +++N T+P +ICDL NL FLDLS N+ GEFP+ LYNC+KLQYL++SQN Sbjct: 20 VFSQ---FNDQSTLLNLKRDLGDPPSLRLWNNTSSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQN 121
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: Q9XGZ2_ARATH (Leucine-rich repeat receptor-like protein kinase OS=Arabidopsis thaliana GN=T1N24.22 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.377e-24 Identity = 59/105 (56.19%), Postives = 84/105 (80.00%), Query Frame = -3 Query: 4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318 ++SQ N+++ LLN+K+ LG+PPS+ WN++SSPC+W EI CTAG+VTG++ +++N T+P +ICDL NL FLDLS N+ GEFP+ LYNC+KLQYL++SQN Sbjct: 20 VFSQ---FNDQSTLLNLKRDLGDPPSLRLWNNTSSPCNWSEITCTAGNVTGINFKNQNFTGTVPTTICDLSNLNFLDLSFNYFAGEFPTVLYNCTKLQYLDLSQN 121
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A5B6Z0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009349 PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 2.085e-24 Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = -3 Query: 1 HNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 297 +ER++LL+VKQQLGNPPS+ SWNSSSSPCDWPEI CT +VT + L +K I IP +ICDLKNL LDLS N IPGEFP L NCSKL+YL + QN+ Sbjct: 32 DDERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEIKCTDNTVTAISLHNKAISEKIPATICDLKNLIVLDLSNNDIPGEFPDIL-NCSKLEYLRLLQNF 129
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0A0LRY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373400 PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.155e-24 Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = -3 Query: 1 SQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 312 SQ++N ++ +LL++K+Q GNPPS+ WN+SS PCDWPEIIC +V G+ LR+K I +P IC+L+NLT LDLS N+IPGEFP LYNCSKL+YL++S NY Sbjct: 115 SQTVNVDQ-AILLDLKEQWGNPPSLWLWNASSLPCDWPEIICRDSTVIGISLRNKTITGKVPTVICNLQNLTVLDLSWNYIPGEFPEVLYNCSKLKYLDLSGNY 217
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.334e-9 Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = -3 Query: 4 CDWPEIICT--AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C WP IICT VTG++L D I + + L LT+LDLS N I GE P L C L++LN+S N Sbjct: 75 CQWPGIICTPQRSRVTGINLTDSTISGPLFKNFSALTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHN 145
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.594e-7 Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = -3 Query: 4 CDWPEIIC--TAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C W + C + SV L+L N+ I P+I DL+NL +DL N + G+ P + NC+ L YL++S+N Sbjct: 59 CSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSEN 129
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 4.648e-7 Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = -3 Query: 4 CDWPEIICTAGS---VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C+W I CT V+ ++L+ N+ I SICDL LT LDLSLNF P L C L+ LN+S N Sbjct: 62 CNWTGITCTRAPTLYVSSINLQSLNLSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSN 133
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 8.074e-7 Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = -3 Query: 4 CDWPEIICT-AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C+W I C + +V L+ + + P I +LK+L LDLS N G PSTL NC+KL L++S+N Sbjct: 64 CNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005970 ID=g.arboreum_cottongen_reftransV1_0005970; Name=g.arboreum_cottongen_reftransV1_0005970; organism=Gossypium arboreum; type=contig; length=491bpback to top |