g.arboreum_cottongen_reftransV1_0019162, g.arboreum_cottongen_reftransV1_0019162 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: M4EMP5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra030065 PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.331e-51 Identity = 86/141 (60.99%), Postives = 108/141 (76.60%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL ++E+CKV KLD M S+A+ A++ + + A+QT LQ RI DYF GD N DV K QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+A+M AA+ ELMNFV ++A Sbjct: 828 KWLAEVESCKVRKLDIMSSAAMAAINVSNTSETSSGAKQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRAIMEAAQTELMNFVDRNA 968
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0D3D6D0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.340e-50 Identity = 85/141 (60.28%), Postives = 106/141 (75.18%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL ++E CKV KLD M S+A+ A++ + + A+QT LQ RI DYF GD N DV K QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+ +M AA+ ELMNFV ++A Sbjct: 776 KWLAEVEFCKVRKLDIMSSAAMAAINVSNTSETSSGAEQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRVIMEAAQTELMNFVDRNA 916
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A078EPQ4_BRANA (BnaC07g11800D protein OS=Brassica napus GN=BnaC07g11800D PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.377e-50 Identity = 85/141 (60.28%), Postives = 106/141 (75.18%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL ++E CKV KLD M S+A+ A++ + + A+QT LQ RI DYF GD N DV K QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+ +M AA+ ELMNFV ++A Sbjct: 777 KWLAEVEFCKVRKLDIMSSAAMAAINVSNTSETSSGAEQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRVIMEAAQTELMNFVDRNA 917
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: V4K8X6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006736mg PE=4 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 1.577e-50 Identity = 84/141 (59.57%), Postives = 107/141 (75.89%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL +IE CKV KLD M S+AV A++ + + A+QT LQ RI DYF GD D+ KM QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+ +M+AA+ EL+NFV +++ Sbjct: 770 KWLAEIETCKVRKLDIMSSAAVAAINVSNTSELSSGAKQTQCLQSRILDYFNGDEKCDIPSKMTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRVIMDAAQTELLNFVDRNS 910
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A072TSR0_MEDTR (RecQ family ATP-dependent DNA helicase OS=Medicago truncatula GN=MTR_8g080160 PE=4 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 5.744e-50 Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 RWL ++E CKV K+DAM+++A FAV+ C+K C+ + T+ LQ I DYF G +N D K+ Q+S FLRADIKVFLQSNS+ +FTPRA+AR+MHGI SPAYP +IW +THFWGRY +IDF VM AAK EL F+GKD Sbjct: 773 RWLSEVECCKVRKMDAMFNAAYFAVNLCDKMSGCSSSDHTSCLQRIILDYFAGVDNADFCKKIDQSSRFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFNVVMEAAKEELKTFIGKD 912
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RQL5_ARATH (ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 2.906e-50 Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL +IE+CKV KLD M S+AV A+ + + A+QT LQ RI DYF GD D K QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+S+WS+THFWGRY+ +DF+ +M AA+ EL NFV ++A Sbjct: 767 KWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTELFNFVDRNA 907
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.398e-10 Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 2 Query: 209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRT-HFWGRYIQIDFKAVMNAAKAELM 403 +R DI+ FL KF+ RA+ARI HGIGSP YP+ ++ + FW +Y+ + F A++ A EL+ Sbjct: 1139 VRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELL 1204
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 1.510e-9 Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2 Query: 209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWS-RTHFWGRYIQIDFKAVMNAAKAELM 403 +R D++ L +F+ RA+ARI HGI SP YP+ ++ FW +Y+ +DF A+M+ A EL+ Sbjct: 1147 IRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHALMHLATEELL 1212 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019162 ID=g.arboreum_cottongen_reftransV1_0019162; Name=g.arboreum_cottongen_reftransV1_0019162; organism=Gossypium arboreum; type=contig; length=886bpback to top |