g.arboreum_cottongen_reftransV1_0019162, g.arboreum_cottongen_reftransV1_0019162 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019162
Unique Nameg.arboreum_cottongen_reftransV1_0019162
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length886
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeg.arboreum_cottongen_reftransV1_0019162:1..886 .
Chr2:49171671..49174355 -
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: M4EMP5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra030065 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.331e-51
Identity = 86/141 (60.99%), Postives = 108/141 (76.60%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL ++E+CKV KLD M S+A+ A++    +   + A+QT  LQ RI DYF GD N DV  K  QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+A+M AA+ ELMNFV ++A
Sbjct:  828 KWLAEVESCKVRKLDIMSSAAMAAINVSNTSETSSGAKQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRAIMEAAQTELMNFVDRNA 968          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0D3D6D0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.340e-50
Identity = 85/141 (60.28%), Postives = 106/141 (75.18%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL ++E CKV KLD M S+A+ A++    +   + A+QT  LQ RI DYF GD N DV  K  QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+ +M AA+ ELMNFV ++A
Sbjct:  776 KWLAEVEFCKVRKLDIMSSAAMAAINVSNTSETSSGAEQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRVIMEAAQTELMNFVDRNA 916          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A078EPQ4_BRANA (BnaC07g11800D protein OS=Brassica napus GN=BnaC07g11800D PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.377e-50
Identity = 85/141 (60.28%), Postives = 106/141 (75.18%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL ++E CKV KLD M S+A+ A++    +   + A+QT  LQ RI DYF GD N DV  K  QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+ +M AA+ ELMNFV ++A
Sbjct:  777 KWLAEVEFCKVRKLDIMSSAAMAAINVSNTSETSSGAEQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRVIMEAAQTELMNFVDRNA 917          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: V4K8X6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006736mg PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.577e-50
Identity = 84/141 (59.57%), Postives = 107/141 (75.89%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL +IE CKV KLD M S+AV A++    +   + A+QT  LQ RI DYF GD   D+  KM QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+ +M+AA+ EL+NFV +++
Sbjct:  770 KWLAEIETCKVRKLDIMSSAAVAAINVSNTSELSSGAKQTQCLQSRILDYFNGDEKCDIPSKMTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRVIMDAAQTELLNFVDRNS 910          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A072TSR0_MEDTR (RecQ family ATP-dependent DNA helicase OS=Medicago truncatula GN=MTR_8g080160 PE=4 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.744e-50
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            RWL ++E CKV K+DAM+++A FAV+ C+K   C+ +  T+ LQ  I DYF G +N D   K+ Q+S FLRADIKVFLQSNS+ +FTPRA+AR+MHGI SPAYP +IW +THFWGRY +IDF  VM AAK EL  F+GKD
Sbjct:  773 RWLSEVECCKVRKMDAMFNAAYFAVNLCDKMSGCSSSDHTSCLQRIILDYFAGVDNADFCKKIDQSSRFLRADIKVFLQSNSHARFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKIDFNVVMEAAKEELKTFIGKD 912          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RQL5_ARATH (ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.906e-50
Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL +IE+CKV KLD M S+AV A+     +   + A+QT  LQ RI DYF GD   D   K  QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+S+WS+THFWGRY+ +DF+ +M AA+ EL NFV ++A
Sbjct:  767 KWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTELFNFVDRNA 907          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.398e-10
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRT-HFWGRYIQIDFKAVMNAAKAELM 403
            +R DI+ FL      KF+ RA+ARI HGIGSP YP+ ++ +   FW +Y+ + F A++  A  EL+
Sbjct: 1139 VRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELL 1204          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.510e-9
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWS-RTHFWGRYIQIDFKAVMNAAKAELM 403
            +R D++  L      +F+ RA+ARI HGI SP YP+ ++     FW +Y+ +DF A+M+ A  EL+
Sbjct: 1147 IRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHALMHLATEELL 1212          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M4EMP5_BRARP2.331e-5160.99Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A0D3D6D0_BRAOL1.340e-5060.28Uncharacterized protein OS=Brassica oleracea var. ... [more]
A0A078EPQ4_BRANA1.377e-5060.28BnaC07g11800D protein OS=Brassica napus GN=BnaC07g... [more]
V4K8X6_EUTSA1.577e-5059.57Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A072TSR0_MEDTR5.744e-5060.00RecQ family ATP-dependent DNA helicase OS=Medicago... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RQL5_ARATH2.906e-5058.87ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... [more]
RECQ4_HUMAN1.398e-1042.42ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=R... [more]
RECQ4_MOUSE1.510e-939.39ATP-dependent DNA helicase Q4 OS=Mus musculus GN=R... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 2..137
NoneNo IPR availablePANTHERPTHR13710:SF76ATP-DEPENDENT DNA HELICASE Q4coord: 2..137

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019162 ID=g.arboreum_cottongen_reftransV1_0019162; Name=g.arboreum_cottongen_reftransV1_0019162; organism=Gossypium arboreum; type=contig; length=886bp
CAGATGGTTACTGGATATTGAAAATTGCAAGGTATGGAAATTGGATGCCA
TGTACAGTTCTGCAGTTTTTGCAGTGGATACATGTGAGAAGACACATGAT
TGCAATGTTGCTCAGCAGACAACATACTTGCAAGAGAGAATTTCGGATTA
TTTTAGGGGGGACAATAACCTTGACGTCCTTGATAAGATGGGTCAGAACA
GCCCTTTTCTTCGAGCAGATATAAAGGTCTTTCTGCAGAGCAACTCAAAT
GTCAAGTTTACTCCAAGAGCTATTGCAAGGATAATGCATGGAATTGGAAG
CCCAGCGTATCCTTCTTCAATTTGGTCAAGAACTCATTTCTGGGGAAGGT
ATATACAAATAGATTTCAAGGCGGTAATGAATGCAGCAAAGGCAGAACTC
ATGAATTTTGTTGGGAAAGATGCACCTTAGATCTTTGCCTCATGGACGAT
ATGCAAGCAACTTTATTTGAGAGCCATATCAAGAAGTTGGTTTGCAGAGT
AGAGAAAACATGATAAAAATGCAGTCGCATGTGTAATTTATATGACAGGT
CAAGGAACAGCTGCATATCTAAAATGAATTAGGGCTTTGAACTTCCAAAG
GATACTAGGAATGCAAATAGTTACTATATTGCAAACAAGCATGCGGCATG
ATGAACTTGTCCCTTTGCTCCCTGCATAACATTTACGGGAGGCAATGCCA
TTTGCAATTTTTCATGCATGATGGTCAGCATGTTTACTATTTGCAATTTA
GCCTATTTTATTTGGCTCCAAGAATGGACATGACTCATGAGTGATCCTTT
CCCTTTTATGGTCTATGACATTTCCGCCCATTGTTGTCTTCCAAGTTACA
ACAACGATGAATTGATAGTAAATTTTAAACTTAGGG
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