g.arboreum_cottongen_reftransV1_0019162, g.arboreum_cottongen_reftransV1_0019162 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K7KQ99_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.297e-59 Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 RWL ++ENCKV K+DAM+++A FA++ C+ C A T LQ +I DYF G +N D K+GQ+SPFLRAD+KVFLQSNS+ +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY IDFK VM AAK EL NFVGKD Sbjct: 33 RWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKD 172
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K7KQ97_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 6.299e-59 Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 RWL ++ENCKV K+DAM+++A FA++ C+ C A T LQ +I DYF G +N D K+GQ+SPFLRAD+KVFLQSNS+ +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY IDFK VM AAK EL NFVGKD Sbjct: 119 RWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKD 258
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: W9RKK3_9ROSA (ATP-dependent DNA helicase Q-like 5 OS=Morus notabilis GN=L484_006736 PE=4 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.600e-55 Identity = 93/142 (65.49%), Postives = 117/142 (82.39%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGD-NNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL ++E+CKV KLDAM+++A FA+++CEK H C AQ T LQ RI DYF + +N D+ +KMGQ+S FLRAD+KVFLQSNS KFTPRA+ARIMHGI SPAY S++WS+THFWGRY +IDF+ V+ AAKAEL+NFVGKDA Sbjct: 848 KWLSEVESCKVRKLDAMFNAATFALNSCEKLHGCCGAQHTPCLQRRILDYFNENYDNYDLPNKMGQSSLFLRADMKVFLQSNSQAKFTPRAVARIMHGIASPAYTSTMWSKTHFWGRYSKIDFQVVLEAAKAELINFVGKDA 989
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: I1KRZ4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2) HSP 1 Score: 202.216 bits (513), Expect = 2.299e-55 Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 RWL ++ENCKV K+DAM+++A FA++ C+ C+ A T LQ +I DYF G +N D K+GQ+SPFLRADIKVFLQSNS +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY IDF+ VM AAK EL NFVGKD Sbjct: 763 RWLSEVENCKVRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFQVVMEAAKEELKNFVGKD 902
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0B2PXC9_GLYSO (ATP-dependent DNA helicase Q-like 5 OS=Glycine soja GN=glysoja_018538 PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.489e-55 Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 RWL ++ENCKV K+DAM+++A FA++ C+ C+ A T LQ +I DYF G +N D K+GQ+SPFLRADIKVFLQSNS +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY IDF+ VM AAK EL NFVGKD Sbjct: 753 RWLSEVENCKVRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFQVVMEAAKEELKNFVGKD 892
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: V7CN90_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G1760001g PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 4.762e-55 Identity = 85/140 (60.71%), Postives = 107/140 (76.43%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 +WL ++E CKV K+DAM+S+ FA++ C+K C+ T +Q +I DYF G +N D K+GQ+SPFLRADIKVFLQSNS +FTPRA+AR+MHGI SPAYPS++WS+THFWGRY +IDFK VM AAK EL VGKD Sbjct: 228 QWLSEVEICKVRKMDAMFSAVYFALNLCDKMQGCSGTNHTPCVQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTVWSKTHFWGRYTRIDFKVVMEAAKEELKKIVGKD 367
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: M5XNZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024068mg PE=4 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 1.938e-54 Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL ++E+CKV KLD M+++AVFAV+ CEK C Q T LQ I YF D+N +V +KMG++S FLRADIKVFLQSNS KFTPRA+ARIMHGI SP+YPS+ WS+THFWGRY IDF+ VM AAKAEL+NFV KDA Sbjct: 827 KWLSEVESCKVRKLDTMFNAAVFAVNACEKVQGCCDGQHTLSLQRNILQYFNEDDNSEVPNKMGKDSRFLRADIKVFLQSNSQAKFTPRAVARIMHGIASPSYPSTFWSKTHFWGRYTNIDFQVVMEAAKAELINFVRKDA 967
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: B9RMM3_RICCO (Rothmund-thomson syndrome DNA helicase recq4, putative OS=Ricinus communis GN=RCOM_1081750 PE=4 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 3.177e-53 Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 2 Query: 17 IENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 ++N KV +LDAM+++AVFAV+ CEK CN +Q T LQ +I DYF+ D D+ +KM Q+SPFLRADIKVFLQSNS KFTPRAIARIM GI SPAYPS+ WS+THFWGRY IDF+ VM AAK ELM+F GK+A Sbjct: 716 LQNLKVRRLDAMFNAAVFAVNECEKMQGCNDSQHTPCLQRKILDYFKEDGRNDITNKMRQSSPFLRADIKVFLQSNSQAKFTPRAIARIMQGIPSPAYPSATWSKTHFWGRYTHIDFQVVMEAAKTELMHFAGKEA 851
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K4BYI8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g014690.1 PE=4 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 2.311e-52 Identity = 84/140 (60.00%), Postives = 107/140 (76.43%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421 +WL ++E+CKV K+D MY +AVFA + C+K H C+ Q T LQ +I++YF ++V ++G +SPFL ADIKVFLQ NS KFTPRAIARI+HGI SPA+PS++WSRTHFWGRY+Q DFKA+ AKAELM VGKD Sbjct: 833 KWLSEVESCKVRKMDTMYDAAVFATEACDKVHGCHDHQHTPCLQRKITEYFVNGTEVEVPKRIGGSSPFLTADIKVFLQCNSYAKFTPRAIARILHGIASPAFPSAVWSRTHFWGRYMQTDFKAITEVAKAELMKLVGKD 972
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A078FS79_BRANA (BnaA07g08730D protein OS=Brassica napus GN=BnaA07g08730D PE=4 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 2.331e-51 Identity = 86/141 (60.99%), Postives = 108/141 (76.60%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL ++E+CKV KLD M S+A+ A++ + + A+QT LQ RI DYF GD N DV K QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+A+M AA+ ELMNFV ++A Sbjct: 828 KWLAEVESCKVRKLDIMSSAAMAAINVSNTSETSSGAKQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRAIMEAAQTELMNFVDRNA 968
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RQL5_ARATH (ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 2.906e-50 Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2 Query: 2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424 +WL +IE+CKV KLD M S+AV A+ + + A+QT LQ RI DYF GD D K QN FLRADIKVFLQSN KFTPRAIARIMHG+GSPA+P+S+WS+THFWGRY+ +DF+ +M AA+ EL NFV ++A Sbjct: 767 KWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTELFNFVDRNA 907
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.398e-10 Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 2 Query: 209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRT-HFWGRYIQIDFKAVMNAAKAELM 403 +R DI+ FL KF+ RA+ARI HGIGSP YP+ ++ + FW +Y+ + F A++ A EL+ Sbjct: 1139 VRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELL 1204
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2) HSP 1 Score: 62.3882 bits (150), Expect = 1.510e-9 Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2 Query: 209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWS-RTHFWGRYIQIDFKAVMNAAKAELM 403 +R D++ L +F+ RA+ARI HGI SP YP+ ++ FW +Y+ +DF A+M+ A EL+ Sbjct: 1147 IRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHALMHLATEELL 1212 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019162 ID=g.arboreum_cottongen_reftransV1_0019162; Name=g.arboreum_cottongen_reftransV1_0019162; organism=Gossypium arboreum; type=contig; length=886bpback to top |