g.arboreum_cottongen_reftransV1_0019162, g.arboreum_cottongen_reftransV1_0019162 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0019162
Unique Nameg.arboreum_cottongen_reftransV1_0019162
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length886
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0019162:1..886 .
Chr2:49171671..49174355 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K7KQ99_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.297e-59
Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            RWL ++ENCKV K+DAM+++A FA++ C+    C  A  T  LQ +I DYF G +N D   K+GQ+SPFLRAD+KVFLQSNS+ +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY  IDFK VM AAK EL NFVGKD
Sbjct:   33 RWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKD 172          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K7KQ97_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.299e-59
Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            RWL ++ENCKV K+DAM+++A FA++ C+    C  A  T  LQ +I DYF G +N D   K+GQ+SPFLRAD+KVFLQSNS+ +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY  IDFK VM AAK EL NFVGKD
Sbjct:  119 RWLSEVENCKVRKMDAMFNAAYFALNLCDNMQGCGGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADLKVFLQSNSHARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFKEVMEAAKEELKNFVGKD 258          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: W9RKK3_9ROSA (ATP-dependent DNA helicase Q-like 5 OS=Morus notabilis GN=L484_006736 PE=4 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.600e-55
Identity = 93/142 (65.49%), Postives = 117/142 (82.39%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGD-NNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL ++E+CKV KLDAM+++A FA+++CEK H C  AQ T  LQ RI DYF  + +N D+ +KMGQ+S FLRAD+KVFLQSNS  KFTPRA+ARIMHGI SPAY S++WS+THFWGRY +IDF+ V+ AAKAEL+NFVGKDA
Sbjct:  848 KWLSEVESCKVRKLDAMFNAATFALNSCEKLHGCCGAQHTPCLQRRILDYFNENYDNYDLPNKMGQSSLFLRADMKVFLQSNSQAKFTPRAVARIMHGIASPAYTSTMWSKTHFWGRYSKIDFQVVLEAAKAELINFVGKDA 989          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: I1KRZ4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.299e-55
Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            RWL ++ENCKV K+DAM+++A FA++ C+    C+ A  T  LQ +I DYF G +N D   K+GQ+SPFLRADIKVFLQSNS  +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY  IDF+ VM AAK EL NFVGKD
Sbjct:  763 RWLSEVENCKVRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFQVVMEAAKEELKNFVGKD 902          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A0B2PXC9_GLYSO (ATP-dependent DNA helicase Q-like 5 OS=Glycine soja GN=glysoja_018538 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.489e-55
Identity = 89/140 (63.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            RWL ++ENCKV K+DAM+++A FA++ C+    C+ A  T  LQ +I DYF G +N D   K+GQ+SPFLRADIKVFLQSNS  +FTPRA+AR+MHGI SPAYPS+ WS+THFWGRY  IDF+ VM AAK EL NFVGKD
Sbjct:  753 RWLSEVENCKVRKMDAMFNAAYFALNLCDTMQGCSGANHTPCLQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTAWSKTHFWGRYTHIDFQVVMEAAKEELKNFVGKD 892          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: V7CN90_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G1760001g PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.762e-55
Identity = 85/140 (60.71%), Postives = 107/140 (76.43%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            +WL ++E CKV K+DAM+S+  FA++ C+K   C+    T  +Q +I DYF G +N D   K+GQ+SPFLRADIKVFLQSNS  +FTPRA+AR+MHGI SPAYPS++WS+THFWGRY +IDFK VM AAK EL   VGKD
Sbjct:  228 QWLSEVEICKVRKMDAMFSAVYFALNLCDKMQGCSGTNHTPCVQRKILDYFSGVDNADFCKKIGQSSPFLRADIKVFLQSNSQARFTPRAVARVMHGIASPAYPSTVWSKTHFWGRYTRIDFKVVMEAAKEELKKIVGKD 367          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: M5XNZ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024068mg PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.938e-54
Identity = 91/141 (64.54%), Postives = 110/141 (78.01%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL ++E+CKV KLD M+++AVFAV+ CEK   C   Q T  LQ  I  YF  D+N +V +KMG++S FLRADIKVFLQSNS  KFTPRA+ARIMHGI SP+YPS+ WS+THFWGRY  IDF+ VM AAKAEL+NFV KDA
Sbjct:  827 KWLSEVESCKVRKLDTMFNAAVFAVNACEKVQGCCDGQHTLSLQRNILQYFNEDDNSEVPNKMGKDSRFLRADIKVFLQSNSQAKFTPRAVARIMHGIASPSYPSTFWSKTHFWGRYTNIDFQVVMEAAKAELINFVRKDA 967          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: B9RMM3_RICCO (Rothmund-thomson syndrome DNA helicase recq4, putative OS=Ricinus communis GN=RCOM_1081750 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 3.177e-53
Identity = 89/136 (65.44%), Postives = 107/136 (78.68%), Query Frame = 2
Query:   17 IENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            ++N KV +LDAM+++AVFAV+ CEK   CN +Q T  LQ +I DYF+ D   D+ +KM Q+SPFLRADIKVFLQSNS  KFTPRAIARIM GI SPAYPS+ WS+THFWGRY  IDF+ VM AAK ELM+F GK+A
Sbjct:  716 LQNLKVRRLDAMFNAAVFAVNECEKMQGCNDSQHTPCLQRKILDYFKEDGRNDITNKMRQSSPFLRADIKVFLQSNSQAKFTPRAIARIMQGIPSPAYPSATWSKTHFWGRYTHIDFQVVMEAAKTELMHFAGKEA 851          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: K4BYI8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g014690.1 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.311e-52
Identity = 84/140 (60.00%), Postives = 107/140 (76.43%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKD 421
            +WL ++E+CKV K+D MY +AVFA + C+K H C+  Q T  LQ +I++YF     ++V  ++G +SPFL ADIKVFLQ NS  KFTPRAIARI+HGI SPA+PS++WSRTHFWGRY+Q DFKA+   AKAELM  VGKD
Sbjct:  833 KWLSEVESCKVRKMDTMYDAAVFATEACDKVHGCHDHQHTPCLQRKITEYFVNGTEVEVPKRIGGSSPFLTADIKVFLQCNSYAKFTPRAIARILHGIASPAFPSAVWSRTHFWGRYMQTDFKAITEVAKAELMKLVGKD 972          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Match: A0A078FS79_BRANA (BnaA07g08730D protein OS=Brassica napus GN=BnaA07g08730D PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.331e-51
Identity = 86/141 (60.99%), Postives = 108/141 (76.60%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL ++E+CKV KLD M S+A+ A++    +   + A+QT  LQ RI DYF GD N DV  K  QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+SIWS+THFWGRY+ +DF+A+M AA+ ELMNFV ++A
Sbjct:  828 KWLAEVESCKVRKLDIMSSAAMAAINVSNTSETSSGAKQTLSLQSRILDYFNGDENCDVPSKTTQNCSFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSIWSKTHFWGRYMSVDFRAIMEAAQTELMNFVDRNA 968          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RQL5_ARATH (ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana GN=RECQL5 PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.906e-50
Identity = 83/141 (58.87%), Postives = 103/141 (73.05%), Query Frame = 2
Query:    2 RWLLDIENCKVWKLDAMYSSAVFAVDTCEKTHDCNVAQQTTYLQERISDYFRGDNNLDVLDKMGQNSPFLRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRTHFWGRYIQIDFKAVMNAAKAELMNFVGKDA 424
            +WL +IE+CKV KLD M S+AV A+     +   + A+QT  LQ RI DYF GD   D   K  QN  FLRADIKVFLQSN   KFTPRAIARIMHG+GSPA+P+S+WS+THFWGRY+ +DF+ +M AA+ EL NFV ++A
Sbjct:  767 KWLTEIESCKVRKLDIMSSAAVAAISVSNTSELSSGAKQTRSLQSRIFDYFNGDEKCDSPSKATQNCAFLRADIKVFLQSNRQAKFTPRAIARIMHGVGSPAFPNSVWSKTHFWGRYMNVDFRVIMEAAQTELFNFVDRNA 907          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_HUMAN (ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.398e-10
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWSRT-HFWGRYIQIDFKAVMNAAKAELM 403
            +R DI+ FL      KF+ RA+ARI HGIGSP YP+ ++ +   FW +Y+ + F A++  A  EL+
Sbjct: 1139 VRCDIRQFLSLRPEEKFSSRAVARIFHGIGSPCYPAQVYGQDRRFWRKYLHLSFHALVGLATEELL 1204          
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Match: RECQ4_MOUSE (ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.510e-9
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  209 LRADIKVFLQSNSNVKFTPRAIARIMHGIGSPAYPSSIWS-RTHFWGRYIQIDFKAVMNAAKAELM 403
            +R D++  L      +F+ RA+ARI HGI SP YP+ ++     FW +Y+ +DF A+M+ A  EL+
Sbjct: 1147 IRRDVRQLLSLRPEERFSGRAVARIFHGIASPCYPAQVYGLDRRFWRKYLHLDFHALMHLATEELL 1212          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K7KQ99_SOYBN1.297e-5963.57Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7KQ97_SOYBN6.299e-5963.57Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
W9RKK3_9ROSA1.600e-5565.49ATP-dependent DNA helicase Q-like 5 OS=Morus notab... [more]
I1KRZ4_SOYBN2.299e-5563.57Uncharacterized protein OS=Glycine max PE=4 SV=2[more]
A0A0B2PXC9_GLYSO2.489e-5563.57ATP-dependent DNA helicase Q-like 5 OS=Glycine soj... [more]
V7CN90_PHAVU4.762e-5560.71Uncharacterized protein (Fragment) OS=Phaseolus vu... [more]
M5XNZ0_PRUPE1.938e-5464.54Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
B9RMM3_RICCO3.177e-5365.44Rothmund-thomson syndrome DNA helicase recq4, puta... [more]
K4BYI8_SOLLC2.311e-5260.00Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A078FS79_BRANA2.331e-5160.99BnaA07g08730D protein OS=Brassica napus GN=BnaA07g... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0019162 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RQL5_ARATH2.906e-5058.87ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis... [more]
RECQ4_HUMAN1.398e-1042.42ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=R... [more]
RECQ4_MOUSE1.510e-939.39ATP-dependent DNA helicase Q4 OS=Mus musculus GN=R... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13710DNA HELICASE RECQ FAMILY MEMBERcoord: 2..137
NoneNo IPR availablePANTHERPTHR13710:SF76ATP-DEPENDENT DNA HELICASE Q4coord: 2..137

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0019162 ID=g.arboreum_cottongen_reftransV1_0019162; Name=g.arboreum_cottongen_reftransV1_0019162; organism=Gossypium arboreum; type=contig; length=886bp
CAGATGGTTACTGGATATTGAAAATTGCAAGGTATGGAAATTGGATGCCA
TGTACAGTTCTGCAGTTTTTGCAGTGGATACATGTGAGAAGACACATGAT
TGCAATGTTGCTCAGCAGACAACATACTTGCAAGAGAGAATTTCGGATTA
TTTTAGGGGGGACAATAACCTTGACGTCCTTGATAAGATGGGTCAGAACA
GCCCTTTTCTTCGAGCAGATATAAAGGTCTTTCTGCAGAGCAACTCAAAT
GTCAAGTTTACTCCAAGAGCTATTGCAAGGATAATGCATGGAATTGGAAG
CCCAGCGTATCCTTCTTCAATTTGGTCAAGAACTCATTTCTGGGGAAGGT
ATATACAAATAGATTTCAAGGCGGTAATGAATGCAGCAAAGGCAGAACTC
ATGAATTTTGTTGGGAAAGATGCACCTTAGATCTTTGCCTCATGGACGAT
ATGCAAGCAACTTTATTTGAGAGCCATATCAAGAAGTTGGTTTGCAGAGT
AGAGAAAACATGATAAAAATGCAGTCGCATGTGTAATTTATATGACAGGT
CAAGGAACAGCTGCATATCTAAAATGAATTAGGGCTTTGAACTTCCAAAG
GATACTAGGAATGCAAATAGTTACTATATTGCAAACAAGCATGCGGCATG
ATGAACTTGTCCCTTTGCTCCCTGCATAACATTTACGGGAGGCAATGCCA
TTTGCAATTTTTCATGCATGATGGTCAGCATGTTTACTATTTGCAATTTA
GCCTATTTTATTTGGCTCCAAGAATGGACATGACTCATGAGTGATCCTTT
CCCTTTTATGGTCTATGACATTTCCGCCCATTGTTGTCTTCCAAGTTACA
ACAACGATGAATTGATAGTAAATTTTAAACTTAGGG
back to top