g.arboreum_cottongen_reftransV1_0020674, g.arboreum_cottongen_reftransV1_0020674 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020674
Unique Nameg.arboreum_cottongen_reftransV1_0020674
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length777
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr8chromosomeg.arboreum_cottongen_reftransV1_0020674:1..777 .
Chr8:4792314..4793713 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B2R4H1_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_032872 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.335e-8
Identity = 32/112 (28.57%), Postives = 55/112 (49.11%), Query Frame = 3
Query:   72 ILHDDELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLS-RTVICPRCRDGVETLAHVFRGCPVASEVW 404
            + H D  V  ++P+G++ +RS Y+LL   + D N + +   +R        L +PSK     WR   + +P+ SNL  + +     +CP CR+  E   H+F  C    ++W
Sbjct:   78 MQHTDTWVWMNDPTGKYTVRSAYQLLDRNSKDDNTDGIFHDLR-------KLKIPSKAAFFAWRQIRDRLPTKSNLTRRNVDINDTLCPFCREKDENAGHLFFSCHKLGQIW 182          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8CW68_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05560 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.049e-7
Identity = 42/152 (27.63%), Postives = 64/152 (42.11%), Query Frame = 3
Query:   57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQA--ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWD--------LWTEEFC 482
            IPLAK  + D L+      GE+++++ Y+LL++  E   P          +  + LW L LP +I    WR   + +P   +L  +R+     C  C +  ET  H F  C  +  VW L   S     +  L   D        L TE+F 
Sbjct:  108 IPLAKNPYPDRLIWHFTRQGEYSVKTGYQLLKSTSEMNSPGSSRSNANKILMWQALWKLKLPMRILTFNWRFGKHILPLKDSLVRRRIGTDPTCSACEEDRETWFHAFISCSFSQAVWRLGGFSMDMAGLESLHPGDWILSRFHQLHTEQFA 259          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: M5WFX2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021345mg PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.955e-7
Identity = 33/110 (30.00%), Postives = 56/110 (50.91%), Query Frame = 3
Query:   84 DELV*RSEPSGEFAIRSVYKLL---QAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVW 404
            D L+   E +G +++RS Y  L   +    +P      T      +++W  ++P KIR  +WR   N + + +NL+ K+++R+ +CP C D  ET  H+   CP    VW
Sbjct:  396 DRLIWPMERNGSYSVRSGYHWLHNTECRRRNPRPSSSMTIDPRLWKQIWKADVPPKIRNFLWRALRNCLATSANLHKKKIARSPMCPLCNDHPETAEHILLLCPWVEPVW 505          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B2QZ70_GLYSO (Putative ribonuclease H protein OS=Glycine soja GN=glysoja_027076 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.212e-7
Identity = 31/103 (30.10%), Postives = 52/103 (50.49%), Query Frame = 3
Query:   99 RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLS-RTVICPRCRDGVETLAHVFRGCPVASEVW 404
            + +P+G ++ +S Y LLQ ET + NL+            LW L + +K  I  WR+  + +P+ SNL  + +    ++CP CR+  E   H+F  C     +W
Sbjct:    3 KPDPNGHYSTKSAYNLLQGETAEENLDGAFAD-------LWKLRISTKTSIFAWRLIRDRLPTKSNLRRRHVEVSDLMCPFCRNKEEDAVHLFFNCTKTLPLW 98          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8C421_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_15629 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.770e-7
Identity = 33/121 (27.27%), Postives = 58/121 (47.93%), Query Frame = 3
Query:   57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQ--AETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLN 413
            IPL +  + D L+      GE+ ++S Y +L+  A+   P+   +     +F + LW + LP+++    WR + + +P  +NL  +R+     C  C    E+  H F  CP +  VW L 
Sbjct:    1 IPLPQNTYPDRLIWHFTKHGEYTVKSGYYILKGGADMSRPSSSNVNPNHILFWKVLWKMKLPARVLSFGWRFARDILPVKANLARRRICVETSCDICGGVSESWFHAFISCPFSQAVWRLG 121          
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.730e-10
Identity = 36/141 (25.53%), Postives = 65/141 (46.10%), Query Frame = 3
Query:   84 DELV*RSEPSGEFAIRSVYKLLQA-ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWDLWTEEFCPEIRCED 503
            D L  +    G+F++RS Y++L   E   PN+         F   LW + +P +++  +W + N  + +    + + LS + +C  C+ GVE++ HV R CP    +WV  +    Q      +L++   +       CED
Sbjct:  253 DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMAS-------FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCED 386          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2R4H1_GLYSO7.335e-828.57Uncharacterized protein (Fragment) OS=Glycine soja... [more]
S8CW68_9LAMI1.049e-727.63Uncharacterized protein (Fragment) OS=Genlisea aur... [more]
M5WFX2_PRUPE1.955e-730.00Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A0B2QZ70_GLYSO2.212e-730.10Putative ribonuclease H protein OS=Glycine soja GN... [more]
S8C421_9LAMI2.770e-727.27Uncharacterized protein (Fragment) OS=Genlisea aur... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RNHX1_ARATH5.730e-1025.53Putative ribonuclease H protein At1g65750 OS=Arabi... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 3..68
e-value: 1.2E-12
score: 48.3
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 7..70

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020674 ID=g.arboreum_cottongen_reftransV1_0020674; Name=g.arboreum_cottongen_reftransV1_0020674; organism=Gossypium arboreum; type=contig; length=777bp
GAAGTGAGATTATTATTGATGTTTTTGATGCTGTTGATGATGCCAGGATT
CTCTGAATTCCGCTCGCAAAAATCCTGCATGATGATGAGCTGGTGTAGAG
AAGTGAACCTTCTGGAGAGTTCGCTATTAGAAGTGTCTATAAACTATTAC
AAGCTGAAACCTATGATCCTAATTTAGAGGAATTACAGACCACGATTAGA
ATGTTCTGTCGAAGACTATGGAGCCTTAATCTACCTTCTAAAATTAGAAT
TACAGTTTGGCGTATTTCAAACAATTTTATCCCATCTATGTCAAACTTGT
ATTTTAAAAGACTATCAAGGACTGTAATATGCCCTAGATGCAGGGATGGA
GTTGAAACCTTAGCGCATGTCTTTCGTGGTTGCCCTGTTGCCAGTGAAGT
CTGGGTTCTTAACATTTGTTCAACATGGCAGTGCCGAATTTCTTGTCTTA
CCCTTTGGGATCTGTGGACTGAGGAGTTCTGTCCCGAGATACGCTGTGAA
GATTCTAGTAGACAATTGGATTCGCGAACCTGATTGAGGCTTGTGGAAGA
GATCAAATTTTGAGTCCTTGTGTGAAAAAAAGGCTTTGCAGATCTGGTCT
TGAGGAAATAAAGCTTCTGGATGCAGGGATGGGAATTTGGAAATTTTTTG
GGAAATGGAAACCGATAGTCATTGGTGCCGACTTAAAGGATGGGACGGGT
AAGGGTTTTCCCTAGGCAACGAGCTATTTCTTTTTCTGTTTCTTTTTCGC
ATTAGGTTTAGGTTGTCTAGTCTTTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026960RVT-Znf