g.arboreum_cottongen_reftransV1_0020674, g.arboreum_cottongen_reftransV1_0020674 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B2R4H1_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_032872 PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 7.335e-8 Identity = 32/112 (28.57%), Postives = 55/112 (49.11%), Query Frame = 3 Query: 72 ILHDDELV*RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLS-RTVICPRCRDGVETLAHVFRGCPVASEVW 404 + H D V ++P+G++ +RS Y+LL + D N + + +R L +PSK WR + +P+ SNL + + +CP CR+ E H+F C ++W Sbjct: 78 MQHTDTWVWMNDPTGKYTVRSAYQLLDRNSKDDNTDGIFHDLR-------KLKIPSKAAFFAWRQIRDRLPTKSNLTRRNVDINDTLCPFCREKDENAGHLFFSCHKLGQIW 182
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8CW68_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05560 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.049e-7 Identity = 42/152 (27.63%), Postives = 64/152 (42.11%), Query Frame = 3 Query: 57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQA--ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWD--------LWTEEFC 482 IPLAK + D L+ GE+++++ Y+LL++ E P + + LW L LP +I WR + +P +L +R+ C C + ET H F C + VW L S + L D L TE+F Sbjct: 108 IPLAKNPYPDRLIWHFTRQGEYSVKTGYQLLKSTSEMNSPGSSRSNANKILMWQALWKLKLPMRILTFNWRFGKHILPLKDSLVRRRIGTDPTCSACEEDRETWFHAFISCSFSQAVWRLGGFSMDMAGLESLHPGDWILSRFHQLHTEQFA 259
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: M5WFX2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021345mg PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 1.955e-7 Identity = 33/110 (30.00%), Postives = 56/110 (50.91%), Query Frame = 3 Query: 84 DELV*RSEPSGEFAIRSVYKLL---QAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVW 404 D L+ E +G +++RS Y L + +P T +++W ++P KIR +WR N + + +NL+ K+++R+ +CP C D ET H+ CP VW Sbjct: 396 DRLIWPMERNGSYSVRSGYHWLHNTECRRRNPRPSSSMTIDPRLWKQIWKADVPPKIRNFLWRALRNCLATSANLHKKKIARSPMCPLCNDHPETAEHILLLCPWVEPVW 505
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: A0A0B2QZ70_GLYSO (Putative ribonuclease H protein OS=Glycine soja GN=glysoja_027076 PE=4 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.212e-7 Identity = 31/103 (30.10%), Postives = 52/103 (50.49%), Query Frame = 3 Query: 99 RSEPSGEFAIRSVYKLLQAETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLS-RTVICPRCRDGVETLAHVFRGCPVASEVW 404 + +P+G ++ +S Y LLQ ET + NL+ LW L + +K I WR+ + +P+ SNL + + ++CP CR+ E H+F C +W Sbjct: 3 KPDPNGHYSTKSAYNLLQGETAEENLDGAFAD-------LWKLRISTKTSIFAWRLIRDRLPTKSNLRRRHVEVSDLMCPFCRNKEEDAVHLFFNCTKTLPLW 98
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Match: S8C421_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_15629 PE=4 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 2.770e-7 Identity = 33/121 (27.27%), Postives = 58/121 (47.93%), Query Frame = 3 Query: 57 IPLAKILHDDELV*RSEPSGEFAIRSVYKLLQ--AETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLN 413 IPL + + D L+ GE+ ++S Y +L+ A+ P+ + +F + LW + LP+++ WR + + +P +NL +R+ C C E+ H F CP + VW L Sbjct: 1 IPLPQNTYPDRLIWHFTKHGEYTVKSGYYILKGGADMSRPSSSNVNPNHILFWKVLWKMKLPARVLSFGWRFARDILPVKANLARRRICVETSCDICGGVSESWFHAFISCPFSQAVWRLG 121
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 5.730e-10 Identity = 36/141 (25.53%), Postives = 65/141 (46.10%), Query Frame = 3 Query: 84 DELV*RSEPSGEFAIRSVYKLLQA-ETYDPNLEELQTTIRMFCRRLWSLNLPSKIRITVWRISNNFIPSMSNLYFKRLSRTVICPRCRDGVETLAHVFRGCPVASEVWVLNICSTWQCRISCLTLWDLWTEEFCPEIRCED 503 D L + G+F++RS Y++L E PN+ F LW + +P +++ +W + N + + + + LS + +C C+ GVE++ HV R CP +WV + Q +L++ + CED Sbjct: 253 DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMAS-------FFNCLWKVRVPERVKTFLWLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDNLGDRSGCED 386 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0020674 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020674 ID=g.arboreum_cottongen_reftransV1_0020674; Name=g.arboreum_cottongen_reftransV1_0020674; organism=Gossypium arboreum; type=contig; length=777bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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