g.arboreum_cottongen_reftransV1_0013229, g.arboreum_cottongen_reftransV1_0013229 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: G7K9N7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g037960 PE=4 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 2.070e-45 Identity = 87/139 (62.59%), Postives = 110/139 (79.14%), Query Frame = 1 Query: 13 ATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +T +DGPVL+ INKRLRALRKK NRI MEES+SQGK+LN EQ++VLRSK +V LIDELEKLRQPLSSA++EE+ LA Q + + ET +QA+ + P + +V +ED+LNLLYFGSLF+VK+Q+DFTSTMLT Sbjct: 5 STTTDGPVLNLINKRLRALRKKLNRITSMEESLSQGKSLNSEQQEVLRSKSSVLVLIDELEKLRQPLSSALTEELELATQTKN-DARETETQAENSEPRPSGENSDV----VEDILNLLYFGSLFEVKTQNDFTSTMLT 138
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: K4ATN9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g010440.2 PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 6.183e-45 Identity = 92/144 (63.89%), Postives = 110/144 (76.39%), Query Frame = 1 Query: 10 LATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETT---SQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKS-QSDFTSTMLT 429 ++ +SDGPVLS INKRLRALRKK++RILQMEES ++GKTLNKEQE+ LRSK V A IDELEKLRQPL++AV EEI+L+ + VS +E+ S DK EP + V +EDLLNLLYFGS+FDVKS QSDFT TMLT Sbjct: 6 VSELSDGPVLSVINKRLRALRKKHSRILQMEESRTKGKTLNKEQEETLRSKSAVIAAIDELEKLRQPLAAAVVEEINLSTGQHQVSPAESAVNISIDSTDKGEPAREGVLV----VEDLLNLLYFGSMFDVKSLQSDFTPTMLT 145
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A078I8L0_BRANA (BnaA08g20080D protein OS=Brassica napus GN=BnaA08g20080D PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 2.517e-44 Identity = 84/137 (61.31%), Postives = 105/137 (76.64%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +GPV++ INKRLRALRKK NRI QMEES+SQGKTLNKEQ++VLRSKP+V LI+EL+KLR PLS+AVSEEI+LA SS +TT+ A ++ E Q+ +EDL+NLLYFGSLF+VKSQS+ S M+T Sbjct: 10 AGEGPVMALINKRLRALRKKLNRITQMEESISQGKTLNKEQQEVLRSKPSVVVLIEELDKLRAPLSAAVSEEIALATHH--TSSDQTTAVAPEEEKEVQK---------LEDLVNLLYFGSLFEVKSQSELASIMMT 135
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: M1ACS9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007711 PE=4 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 4.963e-44 Identity = 91/144 (63.19%), Postives = 113/144 (78.47%), Query Frame = 1 Query: 10 LATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSE---TTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKS-QSDFTSTMLT 429 ++ +SDGPVLS INKRLRALRKK++RILQMEES ++GKTLNKEQE+ LRSK V A IDELEKLRQPL++AV EEI+L+ +++ VS +E T+ +K EP + V + +EDLLNLLYFGS+FDVKS QSDFT TMLT Sbjct: 6 VSELSDGPVLSVINKRLRALRKKHSRILQMEESRTKGKTLNKEQEETLRSKSAVIAAIDELEKLRQPLAAAVVEEINLSTEQRQVSPAEFALDTAIDSTNKGEPARE--GVLE--VEDLLNLLYFGSMFDVKSLQSDFTPTMLT 145
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: K4BWL6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g006900.1 PE=4 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.278e-44 Identity = 82/140 (58.57%), Postives = 105/140 (75.00%), Query Frame = 1 Query: 22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHA---IEDLLNLLYFGSLFDVKS--QSDFTSTML 426 SDGPVL+ INKRLRALRKKYNRILQMEES++ GKTLNKEQE+ RSKP+V A IDELEKLRQPL++AV+EEI+LA Q VS++++ P E+L D++ +EDLLN++YFGS+F + ++DF STM Sbjct: 112 SDGPVLNVINKRLRALRKKYNRILQMEESLANGKTLNKEQEETFRSKPSVVAAIDELEKLRQPLAAAVTEEINLATQHHLVSAADS----------PDEKLAGKGDNSCVEVEDLLNIIYFGSMFAHANWGKNDFVSTMW 241 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013229 ID=g.arboreum_cottongen_reftransV1_0013229; Name=g.arboreum_cottongen_reftransV1_0013229; organism=Gossypium arboreum; type=contig; length=429bpback to top |