g.arboreum_cottongen_reftransV1_0013229, g.arboreum_cottongen_reftransV1_0013229 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013229
Unique Nameg.arboreum_cottongen_reftransV1_0013229
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0013229:1..429 .
Chr12:26035955..26036383 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: G7K9N7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_5g037960 PE=4 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.070e-45
Identity = 87/139 (62.59%), Postives = 110/139 (79.14%), Query Frame = 1
Query:   13 ATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            +T +DGPVL+ INKRLRALRKK NRI  MEES+SQGK+LN EQ++VLRSK +V  LIDELEKLRQPLSSA++EE+ LA Q +   + ET +QA+  +  P  +  +V    +ED+LNLLYFGSLF+VK+Q+DFTSTMLT
Sbjct:    5 STTTDGPVLNLINKRLRALRKKLNRITSMEESLSQGKSLNSEQQEVLRSKSSVLVLIDELEKLRQPLSSALTEELELATQTKN-DARETETQAENSEPRPSGENSDV----VEDILNLLYFGSLFEVKTQNDFTSTMLT 138          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: K4ATN9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g010440.2 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.183e-45
Identity = 92/144 (63.89%), Postives = 110/144 (76.39%), Query Frame = 1
Query:   10 LATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETT---SQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKS-QSDFTSTMLT 429
            ++ +SDGPVLS INKRLRALRKK++RILQMEES ++GKTLNKEQE+ LRSK  V A IDELEKLRQPL++AV EEI+L+  +  VS +E+    S    DK EP  +   V    +EDLLNLLYFGS+FDVKS QSDFT TMLT
Sbjct:    6 VSELSDGPVLSVINKRLRALRKKHSRILQMEESRTKGKTLNKEQEETLRSKSAVIAAIDELEKLRQPLAAAVVEEINLSTGQHQVSPAESAVNISIDSTDKGEPAREGVLV----VEDLLNLLYFGSMFDVKSLQSDFTPTMLT 145          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A078I8L0_BRANA (BnaA08g20080D protein OS=Brassica napus GN=BnaA08g20080D PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.517e-44
Identity = 84/137 (61.31%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
              +GPV++ INKRLRALRKK NRI QMEES+SQGKTLNKEQ++VLRSKP+V  LI+EL+KLR PLS+AVSEEI+LA      SS +TT+ A  ++ E Q+         +EDL+NLLYFGSLF+VKSQS+  S M+T
Sbjct:   10 AGEGPVMALINKRLRALRKKLNRITQMEESISQGKTLNKEQQEVLRSKPSVVVLIEELDKLRAPLSAAVSEEIALATHH--TSSDQTTAVAPEEEKEVQK---------LEDLVNLLYFGSLFEVKSQSELASIMMT 135          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: M1ACS9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400007711 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.963e-44
Identity = 91/144 (63.19%), Postives = 113/144 (78.47%), Query Frame = 1
Query:   10 LATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSE---TTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKS-QSDFTSTMLT 429
            ++ +SDGPVLS INKRLRALRKK++RILQMEES ++GKTLNKEQE+ LRSK  V A IDELEKLRQPL++AV EEI+L+ +++ VS +E    T+    +K EP  +   V +  +EDLLNLLYFGS+FDVKS QSDFT TMLT
Sbjct:    6 VSELSDGPVLSVINKRLRALRKKHSRILQMEESRTKGKTLNKEQEETLRSKSAVIAAIDELEKLRQPLAAAVVEEINLSTEQRQVSPAEFALDTAIDSTNKGEPARE--GVLE--VEDLLNLLYFGSMFDVKSLQSDFTPTMLT 145          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: K4BWL6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g006900.1 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.278e-44
Identity = 82/140 (58.57%), Postives = 105/140 (75.00%), Query Frame = 1
Query:   22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHA---IEDLLNLLYFGSLFDVKS--QSDFTSTML 426
            SDGPVL+ INKRLRALRKKYNRILQMEES++ GKTLNKEQE+  RSKP+V A IDELEKLRQPL++AV+EEI+LA Q   VS++++          P E+L    D++   +EDLLN++YFGS+F   +  ++DF STM 
Sbjct:  112 SDGPVLNVINKRLRALRKKYNRILQMEESLANGKTLNKEQEETFRSKPSVVAAIDELEKLRQPLAAAVTEEINLATQHHLVSAADS----------PDEKLAGKGDNSCVEVEDLLNIIYFGSMFAHANWGKNDFVSTMW 241          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
G7K9N7_MEDTR2.070e-4562.59Uncharacterized protein OS=Medicago truncatula GN=... [more]
K4ATN9_SOLLC6.183e-4563.89Uncharacterized protein OS=Solanum lycopersicum GN... [more]
A0A078I8L0_BRANA2.517e-4461.31BnaA08g20080D protein OS=Brassica napus GN=BnaA08g... [more]
M1ACS9_SOLTU4.963e-4463.19Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4BWL6_SOLLC6.278e-4458.57Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37736:SF1GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MSD24coord: 1..111
NoneNo IPR availablePANTHERPTHR37736FAMILY NOT NAMEDcoord: 1..111

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013229 ID=g.arboreum_cottongen_reftransV1_0013229; Name=g.arboreum_cottongen_reftransV1_0013229; organism=Gossypium arboreum; type=contig; length=429bp
TCCGACTCTCTAGCCACAGTTTCGGACGGCCCCGTCCTTAGCTTCATCAA
CAAACGCCTCCGTGCCCTACGCAAGAAATACAACCGCATTCTCCAAATGG
AAGAATCGGTCTCCCAAGGCAAAACTTTGAACAAAGAACAAGAAGATGTC
CTCCGTTCCAAACCCACCGTATCTGCCCTTATCGATGAACTCGAGAAGCT
TCGCCAGCCTCTTTCTTCCGCTGTCTCCGAAGAAATCTCACTCGCCTTAC
AGCGTCAAACCGTTTCATCATCAGAAACAACCTCTCAAGCCCAACCTGAC
AAGACTGAACCCCAAGAACAACTACCCAATGTCCCCGATCATGCCATTGA
GGATCTCCTCAATCTTCTCTATTTCGGGTCGTTGTTCGATGTCAAGTCTC
AGAGTGATTTTACCTCCACCATGTTGACG
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