g.arboreum_cottongen_reftransV1_0013229, g.arboreum_cottongen_reftransV1_0013229 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: U5G0R0_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0010s04410g PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 9.349e-51 Identity = 90/137 (65.69%), Postives = 103/137 (75.18%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 ++DGPVLS I KRLRAL+KK+NRILQMEES++QGK +NKEQED LRSKP+VSA IDELEKLRQPLS AVSEEI LA R S T +P D +EDLL+LLYFGSLFDVKSQ+DFT+TMLT Sbjct: 9 MADGPVLSLITKRLRALKKKHNRILQMEESIAQGKPINKEQEDFLRSKPSVSAAIDELEKLRQPLSIAVSEEIELAAHRLNPKSDSTV-------------VPEASDEMLEDLLHLLYFGSLFDVKSQNDFTATMLT 132
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: B9S2D8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0698810 PE=4 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 4.375e-50 Identity = 97/144 (67.36%), Postives = 113/144 (78.47%), Query Frame = 1 Query: 7 SLATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSS---ETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 S + ++GPVL+ INKRLRALRKKYNRI+QMEES+SQGK +NKEQEDVLRSKP V+A I+ELEKL+QPLS AVSEEI LA+QRQ SS TT++A D N AIEDLLNLLYFGSLFDVKSQ++FT+TMLT Sbjct: 5 SSSEATEGPVLNLINKRLRALRKKYNRIIQMEESISQGKPINKEQEDVLRSKPYVTASIEELEKLKQPLSVAVSEEIDLAIQRQQQQSSSSDRTTNEANGDS--------NGGGLAIEDLLNLLYFGSLFDVKSQNEFTATMLT 140
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: R0IDH6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009264mg PE=4 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 2.517e-49 Identity = 93/140 (66.43%), Postives = 109/140 (77.86%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTS--QAQPDKTEPQEQLPNVPDHA-IEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 S+GPV+ INKRLRALRKK NRI QMEESVSQGKTLNKEQE+VLRSKP V LI+ELEKLR PLS+AVSEEISLA + SS TT+ Q + + +P + + D A +EDL+NLLYFGSLFDVKSQ++FTS MLT Sbjct: 9 ASEGPVMGLINKRLRALRKKLNRITQMEESVSQGKTLNKEQEEVLRSKPAVVVLIEELEKLRAPLSAAVSEEISLATKHHRDSSDPTTASEQKEIEVCDPPQGVSGSDDGAKLEDLVNLLYFGSLFDVKSQNEFTSIMLT 148
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: V4K9K8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007745mg PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 1.844e-48 Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = 1 Query: 22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLA-LQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +GPV++ INKRLRALRKKYNRI QMEES+SQGKTLNKEQ++VLRSKP V LI+ELEKLR PLS+AVSEEISLA Q SS +T + Q + P+E + D +EDL+NLLYFGSLFDVKSQ+DFTS M+T Sbjct: 12 GEGPVMALINKRLRALRKKYNRITQMEESISQGKTLNKEQQEVLRSKPAVVVLIEELEKLRAPLSAAVSEEISLATTQHHRESSDQTPACVQVNI--PEESHSD-GDAKLEDLVNLLYFGSLFDVKSQNDFTSIMMT 145
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A067H5B6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013233mg PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 3.967e-48 Identity = 96/142 (67.61%), Postives = 110/142 (77.46%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQ-----LPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+VLRSKP V+ALIDEL+KLR PL SA+SEE+SL QRQ S+ T QP+ + + ++ DLLNLLYFGSLFDVKSQSDFT+TMLT Sbjct: 14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVLRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQ---SAPPTPDNQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A067GVM6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013233mg PE=4 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 3.446e-47 Identity = 96/155 (61.94%), Postives = 107/155 (69.03%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIED------------------LLNLLYFGSLFDVKSQSDFTSTMLT 429 +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+VLRSKP V+ALIDEL+KLR PL SA+SEE+SL QRQ+ + PD N P+H LLNLLYFGSLFDVKSQSDFT+TMLT Sbjct: 14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVLRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQSAPPT-------PD---------NQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: V4TER5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031519mg PE=4 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 9.865e-47 Identity = 95/142 (66.90%), Postives = 110/142 (77.46%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKT-----EPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+V RSKP V+ALIDEL+KLR PL SA+SEE+SL QRQ S+ T QP+ + + + ++ DLLNLLYFGSLFDVKSQSDFT+TMLT Sbjct: 14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVFRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQ---SAPPTPDNQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A068TW73_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_5 OS=Coffea canephora GN=GSCOC_T00032159001 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.025e-46 Identity = 89/137 (64.96%), Postives = 105/137 (76.64%), Query Frame = 1 Query: 22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAI-EDLLNLLYFGSLFDVKSQSDFTSTMLT 429 +DGPVLS INKRLRALRKK+NRILQMEES+S GK LNKEQE+ LRSKP V A IDELEKL+QPL+ AVSEEI+ A+Q S SE + T+ E +H + EDLLNLLYFGS+FDVK+Q+DFT+TMLT Sbjct: 14 TDGPVLSLINKRLRALRKKHNRILQMEESLSLGKALNKEQEETLRSKPYVIAAIDELEKLKQPLAVAVSEEINAAIQ----SHSENSPTTTDSTTDKAES----GEHGVAEDLLNLLYFGSMFDVKNQNDFTATMLT 142
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: V4SV88_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031519mg PE=4 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 1.083e-46 Identity = 95/155 (61.29%), Postives = 106/155 (68.39%), Query Frame = 1 Query: 19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIED------------------LLNLLYFGSLFDVKSQSDFTSTMLT 429 +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+V RSKP V+ALIDEL+KLR PL SA+SEE+SL QRQ+ + PD N P+H LLNLLYFGSLFDVKSQSDFT+TMLT Sbjct: 14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVFRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQSAPPT-------PD---------NQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: B9HLX2_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0008s19880g PE=4 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 2.162e-46 Identity = 83/141 (58.87%), Postives = 102/141 (72.34%), Query Frame = 1 Query: 7 SLATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429 S + +++GPVLS I KRLR L+KK+NRI+QMEES++QGK +NKEQED LRSKP+V+A IDELEKLRQPLS AVSEEI LA R S T +P + +EDLL+L YFG LFDV+SQ+DFT+TMLT Sbjct: 5 STSEITEGPVLSLITKRLRGLKKKFNRIVQMEESIAQGKPINKEQEDFLRSKPSVAAAIDELEKLRQPLSVAVSEEIELAAHRLNPKSDSTV-------------VPEASNGVVEDLLHLFYFGCLFDVRSQNDFTATMLT 132 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0013229 ID=g.arboreum_cottongen_reftransV1_0013229; Name=g.arboreum_cottongen_reftransV1_0013229; organism=Gossypium arboreum; type=contig; length=429bpback to top |