g.arboreum_cottongen_reftransV1_0013229, g.arboreum_cottongen_reftransV1_0013229 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013229
Unique Nameg.arboreum_cottongen_reftransV1_0013229
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0013229:1..429 .
Chr12:26035955..26036383 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: U5G0R0_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0010s04410g PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.349e-51
Identity = 90/137 (65.69%), Postives = 103/137 (75.18%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            ++DGPVLS I KRLRAL+KK+NRILQMEES++QGK +NKEQED LRSKP+VSA IDELEKLRQPLS AVSEEI LA  R    S  T              +P   D  +EDLL+LLYFGSLFDVKSQ+DFT+TMLT
Sbjct:    9 MADGPVLSLITKRLRALKKKHNRILQMEESIAQGKPINKEQEDFLRSKPSVSAAIDELEKLRQPLSIAVSEEIELAAHRLNPKSDSTV-------------VPEASDEMLEDLLHLLYFGSLFDVKSQNDFTATMLT 132          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: B9S2D8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0698810 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.375e-50
Identity = 97/144 (67.36%), Postives = 113/144 (78.47%), Query Frame = 1
Query:    7 SLATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSS---ETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            S +  ++GPVL+ INKRLRALRKKYNRI+QMEES+SQGK +NKEQEDVLRSKP V+A I+ELEKL+QPLS AVSEEI LA+QRQ   SS    TT++A  D         N    AIEDLLNLLYFGSLFDVKSQ++FT+TMLT
Sbjct:    5 SSSEATEGPVLNLINKRLRALRKKYNRIIQMEESISQGKPINKEQEDVLRSKPYVTASIEELEKLKQPLSVAVSEEIDLAIQRQQQQSSSSDRTTNEANGDS--------NGGGLAIEDLLNLLYFGSLFDVKSQNEFTATMLT 140          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: R0IDH6_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10009264mg PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.517e-49
Identity = 93/140 (66.43%), Postives = 109/140 (77.86%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTS--QAQPDKTEPQEQLPNVPDHA-IEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
             S+GPV+  INKRLRALRKK NRI QMEESVSQGKTLNKEQE+VLRSKP V  LI+ELEKLR PLS+AVSEEISLA +    SS  TT+  Q + +  +P + +    D A +EDL+NLLYFGSLFDVKSQ++FTS MLT
Sbjct:    9 ASEGPVMGLINKRLRALRKKLNRITQMEESVSQGKTLNKEQEEVLRSKPAVVVLIEELEKLRAPLSAAVSEEISLATKHHRDSSDPTTASEQKEIEVCDPPQGVSGSDDGAKLEDLVNLLYFGSLFDVKSQNEFTSIMLT 148          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: V4K9K8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10007745mg PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.844e-48
Identity = 91/137 (66.42%), Postives = 108/137 (78.83%), Query Frame = 1
Query:   22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLA-LQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
             +GPV++ INKRLRALRKKYNRI QMEES+SQGKTLNKEQ++VLRSKP V  LI+ELEKLR PLS+AVSEEISLA  Q    SS +T +  Q +   P+E   +  D  +EDL+NLLYFGSLFDVKSQ+DFTS M+T
Sbjct:   12 GEGPVMALINKRLRALRKKYNRITQMEESISQGKTLNKEQQEVLRSKPAVVVLIEELEKLRAPLSAAVSEEISLATTQHHRESSDQTPACVQVNI--PEESHSD-GDAKLEDLVNLLYFGSLFDVKSQNDFTSIMMT 145          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A067H5B6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013233mg PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.967e-48
Identity = 96/142 (67.61%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQ-----LPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+VLRSKP V+ALIDEL+KLR PL SA+SEE+SL  QRQ   S+  T   QP+      +       +    ++ DLLNLLYFGSLFDVKSQSDFT+TMLT
Sbjct:   14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVLRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQ---SAPPTPDNQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A067GVM6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013233mg PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.446e-47
Identity = 96/155 (61.94%), Postives = 107/155 (69.03%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIED------------------LLNLLYFGSLFDVKSQSDFTSTMLT 429
            +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+VLRSKP V+ALIDEL+KLR PL SA+SEE+SL  QRQ+   +       PD         N P+H                      LLNLLYFGSLFDVKSQSDFT+TMLT
Sbjct:   14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVLRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQSAPPT-------PD---------NQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: V4TER5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031519mg PE=4 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 9.865e-47
Identity = 95/142 (66.90%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKT-----EPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+V RSKP V+ALIDEL+KLR PL SA+SEE+SL  QRQ   S+  T   QP+       +  +   +    ++ DLLNLLYFGSLFDVKSQSDFT+TMLT
Sbjct:   14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVFRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQ---SAPPTPDNQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A068TW73_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_5 OS=Coffea canephora GN=GSCOC_T00032159001 PE=4 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.025e-46
Identity = 89/137 (64.96%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAI-EDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            +DGPVLS INKRLRALRKK+NRILQMEES+S GK LNKEQE+ LRSKP V A IDELEKL+QPL+ AVSEEI+ A+Q    S SE +       T+  E      +H + EDLLNLLYFGS+FDVK+Q+DFT+TMLT
Sbjct:   14 TDGPVLSLINKRLRALRKKHNRILQMEESLSLGKALNKEQEETLRSKPYVIAAIDELEKLKQPLAVAVSEEINAAIQ----SHSENSPTTTDSTTDKAES----GEHGVAEDLLNLLYFGSMFDVKNQNDFTATMLT 142          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: V4SV88_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031519mg PE=4 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.083e-46
Identity = 95/155 (61.29%), Postives = 106/155 (68.39%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIED------------------LLNLLYFGSLFDVKSQSDFTSTMLT 429
            +SDGPVLS INKRLRALRKKYNRI+QMEESVSQGKTLNKEQE+V RSKP V+ALIDEL+KLR PL SA+SEE+SL  QRQ+   +       PD         N P+H                      LLNLLYFGSLFDVKSQSDFT+TMLT
Sbjct:   14 MSDGPVLSVINKRLRALRKKYNRIVQMEESVSQGKTLNKEQEEVFRSKPIVTALIDELDKLRSPLCSALSEELSLH-QRQSAPPT-------PD---------NQPNHVANSTKDDNDDNDDDDSSSVSDLLNLLYFGSLFDVKSQSDFTATMLT 151          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: B9HLX2_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0008s19880g PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.162e-46
Identity = 83/141 (58.87%), Postives = 102/141 (72.34%), Query Frame = 1
Query:    7 SLATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            S + +++GPVLS I KRLR L+KK+NRI+QMEES++QGK +NKEQED LRSKP+V+A IDELEKLRQPLS AVSEEI LA  R    S  T              +P   +  +EDLL+L YFG LFDV+SQ+DFT+TMLT
Sbjct:    5 STSEITEGPVLSLITKRLRGLKKKFNRIVQMEESIAQGKPINKEQEDFLRSKPSVAAAIDELEKLRQPLSVAVSEEIELAAHRLNPKSDSTV-------------VPEASNGVVEDLLHLFYFGCLFDVRSQNDFTATMLT 132          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
U5G0R0_POPTR9.349e-5165.69Glycine-rich family protein OS=Populus trichocarpa... [more]
B9S2D8_RICCO4.375e-5067.36Putative uncharacterized protein OS=Ricinus commun... [more]
R0IDH6_9BRAS2.517e-4966.43Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
V4K9K8_EUTSA1.844e-4866.42Uncharacterized protein OS=Eutrema salsugineum GN=... [more]
A0A067H5B6_CITSI3.967e-4867.61Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067GVM6_CITSI3.446e-4761.94Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4TER5_9ROSI9.865e-4766.90Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A068TW73_COFCA1.025e-4664.96Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
V4SV88_9ROSI1.083e-4661.29Uncharacterized protein OS=Citrus clementina GN=CI... [more]
B9HLX2_POPTR2.162e-4658.87Glycine-rich family protein OS=Populus trichocarpa... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37736:SF1GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MSD24coord: 1..111
NoneNo IPR availablePANTHERPTHR37736FAMILY NOT NAMEDcoord: 1..111

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013229 ID=g.arboreum_cottongen_reftransV1_0013229; Name=g.arboreum_cottongen_reftransV1_0013229; organism=Gossypium arboreum; type=contig; length=429bp
TCCGACTCTCTAGCCACAGTTTCGGACGGCCCCGTCCTTAGCTTCATCAA
CAAACGCCTCCGTGCCCTACGCAAGAAATACAACCGCATTCTCCAAATGG
AAGAATCGGTCTCCCAAGGCAAAACTTTGAACAAAGAACAAGAAGATGTC
CTCCGTTCCAAACCCACCGTATCTGCCCTTATCGATGAACTCGAGAAGCT
TCGCCAGCCTCTTTCTTCCGCTGTCTCCGAAGAAATCTCACTCGCCTTAC
AGCGTCAAACCGTTTCATCATCAGAAACAACCTCTCAAGCCCAACCTGAC
AAGACTGAACCCCAAGAACAACTACCCAATGTCCCCGATCATGCCATTGA
GGATCTCCTCAATCTTCTCTATTTCGGGTCGTTGTTCGATGTCAAGTCTC
AGAGTGATTTTACCTCCACCATGTTGACG
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