g.arboreum_cottongen_reftransV1_0005130, g.arboreum_cottongen_reftransV1_0005130 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0005130
Unique Name	g.arboreum_cottongen_reftransV1_0005130
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	533

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr7	chromosome	g.arboreum_cottongen_reftransV1_0005130:1..533 . Chr7:38755950..38756482 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: A0A0D2QYH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G009100 PE=4 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 4.956e-88
Identity = 174/177 (98.31%), Postives = 174/177 (98.31%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFKSSIKQSSIPSWSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGQLTPLISQLTQLTTLDLSDNYFFGRIPSSI SLRNLQTL LTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLP NLLELALKAN
Sbjct:   28 SALKAFKSSIKQSSIPSWSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGQLTPLISQLTQLTTLDLSDNYFFGRIPSSIYSLRNLQTLTLTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPFNLLELALKAN 204

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: A0A061E129_THECC (Leucine-rich repeat (LRR) family protein OS=Theobroma cacao GN=TCM_007126 PE=4 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.269e-69
Identity = 141/177 (79.66%), Postives = 159/177 (89.83%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFK+SIK SSIPSWSCLASWDF+ DPCA+P RT FICG++CSPD+ R+TQITLDP GYSGQL PL+SQLTQLTTLDLSDN FFG IPSSI+SLR+LQ+L L SNSFSGSIPDSV  +KSLE LDLSHN+LSG LPK+LNSL+SL+R+DLSYNK TGFLPKLP NLLELAL+ N
Sbjct:   28 SALKAFKASIKPSSIPSWSCLASWDFTTDPCAIPRRTHFICGLTCSPDSARVTQITLDPAGYSGQLNPLVSQLTQLTTLDLSDNNFFGPIPSSITSLRSLQSLTLRSNSFSGSIPDSVATIKSLEYLDLSHNSLSGPLPKTLNSLSSLRRVDLSYNKFTGFLPKLPYNLLELALRGN 204

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: B9HS48_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10000g PE=4 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 4.610e-69
Identity = 137/177 (77.40%), Postives = 155/177 (87.57%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFK+S+K SSI  WSCLASWDF  DPCAVP RTRF CG++CSPD+TR+TQ+TLD  GYSG+LTPL SQLT L  LDL+DN FFG IPSSISSL NLQTL L SNSFSGS+PDS+T LKSLE+LDLSHN+LSG LPK++NS++SL+RLDLSYNKLTG LPKLP NLLELALKAN
Sbjct:   30 SALKAFKASVKPSSIQPWSCLASWDFIADPCAVPRRTRFTCGITCSPDSTRVTQLTLDSAGYSGRLTPLTSQLTSLIILDLADNNFFGPIPSSISSLINLQTLTLRSNSFSGSVPDSITNLKSLESLDLSHNSLSGYLPKTMNSMSSLRRLDLSYNKLTGSLPKLPYNLLELALKAN 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: B9GHD2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30880g PE=4 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 1.939e-67
Identity = 135/177 (76.27%), Postives = 155/177 (87.57%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFK+S+K SSI  WSCLASWDF+ DPCA P RT FICG++CSPD+TR+TQ+TLDP GYSGQLTPLIS LT LT LDL DN F+G IPSSISSL NLQTL L+SNSFSG++P+S+T LKSLE+LD SHN LSG LPK++NS++SL+RLDLSYNKLTG LPKLP NLLELALKAN
Sbjct:   33 SALKAFKASVKPSSIQPWSCLASWDFTTDPCAFPRRTHFICGITCSPDSTRVTQLTLDPAGYSGQLTPLISLLTSLTILDLVDNNFYGPIPSSISSLINLQTLTLSSNSFSGAVPNSITNLKSLESLDFSHNYLSGYLPKTMNSMSSLRRLDLSYNKLTGPLPKLPYNLLELALKAN 209

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: A0A0D2VAM6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G046700 PE=4 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.350e-67
Identity = 143/178 (80.34%), Postives = 159/178 (89.33%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFSD-DPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFK+SIK +SIPSWSCLASWDF+  DPCA+P RT F CG+ CS D+TR+TQITLDP GYSGQLTPL+SQLTQLT LDLSDN FFG IPSSISSLR+LQTLIL SNSFSGSIPDSVT LKSLE+LD+SHN+LSG LPK+LN L+ L+RLDLSYN+LTGFLPKLP NLLELALK N
Sbjct:   45 SALKAFKASIKPTSIPSWSCLASWDFAAADPCALPRRTHFTCGIICSIDSTRVTQITLDPAGYSGQLTPLLSQLTQLTILDLSDNSFFGSIPSSISSLRSLQTLILKSNSFSGSIPDSVTTLKSLESLDISHNSLSGPLPKTLNLLSGLRRLDLSYNQLTGFLPKLPYNLLELALKGN 222

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: C6ZS02_SOYBN (Leucine-rich repeat disease resistance protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.996e-63
Identity = 133/177 (75.14%), Postives = 155/177 (87.57%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            +ALKAFK+SIK SSI  WSCLASW+F+ DPC++P RT FICG++C+ D+TRI QITLDP GYSG LTPLISQLTQLTTLDL+DN FFG IPSSIS L NLQTL L SNSFSG+IP S+T LKSL +LDL+HN+LSG LP S+NSLT+L+RLDLS+NKLTG +PKLPSNLLELA+KAN
Sbjct:   34 AALKAFKASIKPSSITPWSCLASWNFTTDPCSLPRRTSFICGLTCTQDSTRINQITLDPAGYSGTLTPLISQLTQLTTLDLADNNFFGPIPSSISLLSNLQTLTLRSNSFSGTIPPSITTLKSLLSLDLAHNSLSGYLPNSMNSLTTLRRLDLSFNKLTGSIPKLPSNLLELAIKAN 210

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: B9RYA6_RICCO (Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0811600 PE=4 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.383e-61
Identity = 138/178 (77.53%), Postives = 154/178 (86.52%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFS-DDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFKSSIK SSIPSWSCLASWDF+  DPC +P R+ F CGV+CS DATR+TQ+TLDP+GYSGQLTPLISQLT LT LDLSDN FFG +PSSISSL NLQTL L  NSFSGS+P S+T LKSL +LDLSHN+L G LPKS+NS++SL+RLDLSYNKLTG LPKLP NLLELALK N
Sbjct:   29 SALKAFKSSIKPSSIPSWSCLASWDFTLADPCLLPRRSHFTCGVTCSSDATRVTQLTLDPVGYSGQLTPLISQLTNLTILDLSDNNFFGSVPSSISSLINLQTLTLRFNSFSGSLPISITNLKSLRSLDLSHNSLFGYLPKSMNSMSSLRRLDLSYNKLTGSLPKLPYNLLELALKNN 206

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: Q9SHU4_ARATH (Leucine-rich repeat-containing protein OS=Arabidopsis thaliana GN=At2g15320 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.275e-60
Identity = 124/178 (69.66%), Postives = 157/178 (88.20%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFS-DDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFK+++K +SIP WSCLASWDF+  DPCA P RT F CG++CS D+TR+TQ+TLDP GY+G+LTPLIS LT+L TLDL++N F+G IPSSISSL +L+TLIL SNSFSGS+PDSVT L SLE++D+SHN+L+G LPK++NSL++L++LDLSYNKLTG +PKLP NL++LALKAN
Sbjct:   26 SALKAFKATVKPNSIPPWSCLASWDFTVSDPCASPRRTHFTCGITCSSDSTRVTQLTLDPAGYTGRLTPLISGLTELLTLDLAENNFYGLIPSSISSLTSLKTLILRSNSFSGSLPDSVTRLNSLESIDISHNSLTGPLPKTMNSLSNLRQLDLSYNKLTGAIPKLPKNLIDLALKAN 203

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: Q8LDD9_ARATH (Putative leucine-rich repeat disease resistance protein OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.623e-60
Identity = 124/178 (69.66%), Postives = 157/178 (88.20%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFS-DDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            SALKAFK+++K +SIP WSCLASWDF+  DPCA P RT F CG++CS D+TR+TQ+TLDP GY+G+LTPLIS LT+L TLDL++N F+G IPSSISSL +L+TLIL SNSFSGS+PDSVT L SLE++D+SHN+L+G LPK++NSL++L++LDLSYNKLTG +PKLP NL++LALKAN
Sbjct:   28 SALKAFKATVKPNSIPPWSCLASWDFTVSDPCASPRRTHFTCGITCSSDSTRVTQLTLDPAGYTGRLTPLISGLTELLTLDLAENNFYGLIPSSISSLTSLKTLILRSNSFSGSLPDSVTRLNSLESIDISHNSLTGPLPKTMNSLSNLRQLDLSYNKLTGAIPKLPKNLIDLALKAN 205

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Match: V7BEZ1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G038700g PE=4 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 5.534e-60
Identity = 129/177 (72.88%), Postives = 149/177 (84.18%), Query Frame = -2

Query:    2 SALKAFXXXXXXXXXXXXSCLASWDFSDDPCAVPHRTRFICGVSCSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKAN 532
            +ALKAFK SIK SSI S SCLASW+F+ DPC++P RT FICG +C+ D+ RI+QITLDP GYSG LTPLIS+L+QLTTLDLSDN FFG IPSSISSL NLQTL L SN FSG IP S+T LKSL++LDLSHN+L G L  S+NSLT L+RLDLS+NKLTG +PKLP NLLELA+KAN
Sbjct:   35 AALKAFKDSIKPSSIASSSCLASWNFTTDPCSLPRRTSFICGFTCTADSRRISQITLDPAGYSGTLTPLISRLSQLTTLDLSDNSFFGSIPSSISSLYNLQTLTLRSNFFSGPIPPSITTLKSLQSLDLSHNSLYGYLLNSMNSLTKLRRLDLSFNKLTGSIPKLPPNLLELAIKAN 211

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy Swiss-Prot
Match: Y1723_ARATH (Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.185e-13
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = -2

Query:   14 GYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELA 352
            G+SG +   IS    L  L L++N   G +P  +  L+NL  LIL  N  SG IP SV  +  LE L L  N  +G +P+ +  LT +KRL L  N+LTG +P+   NL++ A
Sbjct:  198 GFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAA 310

HSP 2 Score: 68.5514 bits (166), Expect = 3.587e-12
Identity = 34/92 (36.96%), Postives = 53/92 (57.61%), Query Frame = -2

Query:   11 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELAL 286
             N   G IP S+ ++  L+ L L  N F+GSIP  +  L  ++ L L  N L+G++P+ + +L     +D S N+LTGF+PK   ++L L L
Sbjct:  244 QNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKL 335

HSP 3 Score: 67.3958 bits (163), Expect = 9.029e-12
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = -2

Query:   41 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 286
            +NY FG IP  I +L +LQ L++ SN+ +G IP S+  L+ L  +    N  SG +P  ++   SLK L L+ N L G LPK
Sbjct:  148 ENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPK 229

HSP 4 Score: 66.6254 bits (161), Expect = 1.326e-11
Identity = 32/92 (34.78%), Postives = 55/92 (59.78%), Query Frame = -2

Query:   11 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELAL 286
             N+  G I + +  L+NL+ L L +N+F+G IP  +  L  +   ++S N L+G +PK L S  +++RLDLS NK +G++ +    L+ L +
Sbjct:  484 QNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEI 575

HSP 5 Score: 60.8474 bits (146), Expect = 9.866e-10
Identity = 40/94 (42.55%), Postives = 54/94 (57.45%), Query Frame = -2

Query:   11 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLE-TLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELAL 289
            SDN   G IP S   L  L  L L  N  S +IP  +  L SL+ +L++SHN LSG +P SL +L  L+ L L+ NKL+G +P    NL+ L +
Sbjct:  579 SDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLI 672

HSP 6 Score: 59.3066 bits (142), Expect = 2.814e-9
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = -2

Query:   41 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 289
             DN   G +P  + +L+NL  L L  N  SG+I   +  LK+LE L L++N  +G++P  + +LT +   ++S N+LTG +PK
Sbjct:  459 GDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPK 541

HSP 7 Score: 56.9954 bits (136), Expect = 1.582e-8
Identity = 34/106 (32.08%), Postives = 48/106 (45.28%), Query Frame = -2

Query:   41 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKS------------------------LNSLTSLKRLDLSYNKLTGFLPK 286
            +NYF G IP  I  L  ++ L L +N  +G IP  +  L     +D S N L+G +PK                         L  LT L++LDLS N+L G +P+
Sbjct:  268 ENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQ 373

HSP 8 Score: 56.6102 bits (135), Expect = 2.007e-8
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = -2

Query:   41 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 283
            N F G IPS IS   +L+ L L  N   GS+P  +  L++L  L L  N LSG++P S+ +++ L+ L L  N  TG +P+
Sbjct:  197 NGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPR 277

HSP 9 Score: 56.225 bits (134), Expect = 2.808e-8
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = -2

Query:   44 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 286
            DN   G+IP  I    N   L +++NS SG IP      ++L  L L  N LSG +P+ L +  SL +L L  N+LTG LP
Sbjct:  388 DNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLP 468

HSP 10 Score: 55.0694 bits (131), Expect = 7.052e-8
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = -2

Query:   14 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELA 283
            N   G IP  + + ++L  L+L  N  +GS+P  +  L++L  L+L  N LSG +   L  L +L+RL L+ N  TG +P    NL ++ 
Sbjct:  437 NKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIV 526

HSP 11 Score: 54.299 bits (129), Expect = 1.181e-7
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = -2

Query:   44 IPSSISSLRNLQ-TLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 265
            IP  +  L +LQ +L ++ N+ SG+IPDS+  L+ LE L L+ N LSG++P S+ +L SL   ++S N L G +P
Sbjct:  611 IPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVP 685

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy Swiss-Prot
Match: TD1_MAIZE (Leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 OS=Zea mays GN=TD1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.279e-13
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = -2

Query:   44 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 289
             +N   GRIP++I +L  LQTL L SN+FSG +P  +  L++L  L+ S NAL+G +P+ L    SL  +DLS N LTG +P
Sbjct:  475 GNNRIGGRIPAAIGNLPALQTLSLESNNFSGPLPPEIGRLRNLTRLNASGNALTGGIPRELMGCASLGAVDLSRNGLTGEIP 556

HSP 2 Score: 70.8626 bits (172), Expect = 5.109e-13
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = -2

Query:   44 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 289
            S N   G IP  +    +L  + L+ N  +G IPD+VT+LK L TL++S N LSG+LP ++ ++TSL  LD+SYN+L+G +P
Sbjct:  523 SGNALTGGIPRELMGCASLGAVDLSRNGLTGEIPDTVTSLKILCTLNVSRNRLSGELPAAMANMTSLTTLDVSYNQLSGPVP 604

HSP 3 Score: 65.0846 bits (157), Expect = 4.722e-11
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = -2

Query:   17 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLEL 283
            N F G +P  I  LRNL  L  + N+ +G IP  +    SL  +DLS N L+G++P ++ SL  L  L++S N+L+G LP   +N+  L
Sbjct:  501 NNFSGPLPPEIGRLRNLTRLNASGNALTGGIPRELMGCASLGAVDLSRNGLTGEIPDTVTSLKILCTLNVSRNRLSGELPAAMANMTSL 589

HSP 4 Score: 61.6178 bits (148), Expect = 4.911e-10
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = -2

Query:   38 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKL 289
            + N+  G IP  + + RNLQ L+L  N F GSIP+S+   K+L  + L  N L+G +P  L  L     L+L+ N LTG LP +
Sbjct:  380 TSNHLTGTIPPDLCAGRNLQLLVLMDNGFFGSIPESLGDCKTLTRVRLGKNFLTGPVPAGLFDLPQANMLELTDNMLTGELPDV 463

HSP 5 Score: 60.8474 bits (146), Expect = 9.444e-10
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = -2

Query:   44 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 283
            N + G +P    +L++L  L ++S + +G IP  +  L  L+TL L+ N L+G++P  L +LTSL+ LDLS N L G +P
Sbjct:  238 NQYSGGVPREFGALQSLVRLDMSSCTLTGPIPPELARLSRLDTLFLALNQLTGEIPPELGALTSLRSLDLSINDLAGEIP 317

HSP 6 Score: 57.7658 bits (138), Expect = 1.069e-8
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = -2

Query:   44 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSH-NALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 283
            NYF G IP +   L  L+ L L  N+ SG +P S++ L  L  + + + N  SG +P+   +L SL RLD+S   LTG +P
Sbjct:  189 NYFNGSIPDTFGDLAALEYLGLNGNALSGRVPPSLSRLSRLREMYVGYYNQYSGGVPREFGALQSLVRLDMSSCTLTGPIP 269

HSP 7 Score: 56.9954 bits (136), Expect = 1.591e-8
Identity = 30/68 (44.12%), Postives = 47/68 (69.12%), Query Frame = -2

Query:   41 RNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLS-YNKLTGFLPK 241
            R+L+ L L  N F+GSIPD+   L +LE L L+ NALSG++P SL+ L+ L+ + +  YN+ +G +P+
Sbjct:  179 RSLRYLHLGGNYFNGSIPDTFGDLAALEYLGLNGNALSGRVPPSLSRLSRLREMYVGYYNQYSGGVPR 246

HSP 8 Score: 55.0694 bits (131), Expect = 6.923e-8
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = -2

Query:   17 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK----LP-SNLLEL 286
            DN   G +P ++     L+TL +TSN  +G+IP  + A ++L+ L L  N   G +P+SL    +L R+ L  N LTG +P     LP +N+LEL
Sbjct:  357 DNNLTGPLPPALGRNGRLKTLDVTSNHLTGTIPPDLCAGRNLQLLVLMDNGFFGSIPESLGDCKTLTRVRLGKNFLTGPVPAGLFDLPQANMLEL 451

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.542e-13
Identity = 48/111 (43.24%), Postives = 70/111 (63.06%), Query Frame = -2

Query:   41 ITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQT-LILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 370
            + LD   +SG L   + +L++L  L LS N   G IP  I  L++LQ+ L L+ N+F+G IP ++  L  LETLDLSHN L+G++P S+  + SL  L++S+N L G L K
Sbjct:  724 LNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKK 834

HSP 2 Score: 68.1662 bits (165), Expect = 4.458e-12
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = -2

Query:    2 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKL---PSNLLELALKAN 289
            ++N   G IP+ +  L NL+ L L +NS +G IP  +  +  L+ L L  N L G +PKSL  L +L+ LDLS N LTG +P+     S LL+L L  N
Sbjct:  223 AENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANN 321

HSP 3 Score: 65.0846 bits (157), Expect = 4.951e-11
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = -2

Query:   11 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELAL 286
            +N   G +  SIS+L NLQ L+L  N+  G +P  ++AL+ LE L L  N  SG++P+ + + TSLK +D+  N   G +P     L EL L
Sbjct:  393 NNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNL 484

HSP 4 Score: 63.929 bits (154), Expect = 1.015e-10
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = -2

Query:   53 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTG 286
             N   G +P+S+ +   L  L L  N  SGSIP S   LK LE L L +N+L G LP SL SL +L R++LS+N+L G
Sbjct:  489 QNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNG 566

HSP 5 Score: 63.1586 bits (152), Expect = 1.695e-10
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = -2

Query:   41 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 289
            ++N   G IPS +  +  LQ L L +N   G IP S+  L +L+TLDLS N L+G++P+   +++ L  L L+ N L+G LPK
Sbjct:  247 ANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPK 329

HSP 6 Score: 63.1586 bits (152), Expect = 2.171e-10
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = -2

Query:   41 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 289
             DNY  G IP+ + +  +L       N  +G+IP  +  L++LE L+L++N+L+G++P  L  ++ L+ L L  N+L G +PK
Sbjct:  199 QDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPK 281

HSP 7 Score: 60.8474 bits (146), Expect = 9.800e-10
Identity = 39/116 (33.62%), Postives = 61/116 (52.59%), Query Frame = -2

Query:   11 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSG-----------------------KLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELAL 289
            +DN   G IPSS   L+ L+ L+L +NS  G++PDS+ +L++L  ++LSHN L+G                       ++P  L +  +L RL L  N+LTG +P     + EL+L
Sbjct:  512 ADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSL 627

HSP 8 Score: 60.4622 bits (145), Expect = 1.333e-9
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = -2

Query:   44 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKR-LDLSYNKLTGFLP 283
            N   G IP  I +L  L  L L  N FSGS+P ++  L  L  L LS N+L+G++P  +  L  L+  LDLSYN  TG +P
Sbjct:  705 NSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIP 785

HSP 9 Score: 58.151 bits (139), Expect = 8.443e-9
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = -2

Query:   44 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSL-NSLTSLKRLDLSYNKLTGFLP 283
            N   G IP S++ L NLQTL L++N+ +G IP+    +  L  L L++N LSG LPKS+ ++ T+L++L LS  +L+G +P
Sbjct:  273 NQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIP 353

HSP 10 Score: 57.3806 bits (137), Expect = 1.169e-8
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = -2

Query:   29 CSPDATRITQITLDPIGYSGXXXXXXXXXXXXXXXXLSDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSN 400
            CS + T + Q+ L     SG++   +S+   L  LDLS+N   G IP ++  L  L  L L +N+  G++  S++ L +L+ L L HN L GKLPK +++L  L+ L L  N+ +G +P+   N
Sbjct:  332 CS-NNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGN 454

HSP 11 Score: 57.3806 bits (137), Expect = 1.232e-8
Identity = 37/92 (40.22%), Postives = 55/92 (59.78%), Query Frame = -2

Query:   17 SDNYFFGRIPSSI-SSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLEL 289
            ++N+  G +P SI S+  NL+ L+L+    SG IP  ++  +SL+ LDLS+N+L+G +P++L  L  L  L L  N L G L    SNL  L
Sbjct:  319 ANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNL 410

HSP 12 Score: 56.9954 bits (136), Expect = 1.707e-8
Identity = 32/82 (39.02%), Postives = 45/82 (54.88%), Query Frame = -2

Query:   44 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 289
            S N F   +P+ + +   L  L L  NS +GSIP  +  L +L  L+L  N  SG LP+++  L+ L  L LS N LTG +P
Sbjct:  679 SSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIP 760

HSP 13 Score: 55.0694 bits (131), Expect = 6.704e-8
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = -2

Query:   26 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNL 283
            N   G+IP ++  +R L  L ++SN+ +G+IP  +   K L  +DL++N LSG +P  L  L+ L  L LS N+   F+  LP+ L
Sbjct:  609 NQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQ---FVESLPTEL 691

HSP 14 Score: 53.1434 bits (126), Expect = 3.099e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = -2

Query:  110 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKS 289
            S N F G IPS+I +L  L+TL L+ N  +G +P SV  +KSL  L++S N L GKL K 
Sbjct:  776 SYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQ 835

HSP 15 Score: 51.6026 bits (122), Expect = 8.878e-7
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = -2

Query:    2 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP----KLPSNLLELALKAN 289
            ++N F   IP  + + +NL  L L  N  +G IP ++  ++ L  LD+S NAL+G +P  L     L  +DL+ N L+G +P    KL S L EL L +N
Sbjct:  583 TNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKL-SQLGELKLSSN 681

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy Swiss-Prot
Match: GSO2_ARATH (LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.887e-13
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = -2

Query:   41 SDNYFFGRIPSSISSLRNLQT-LILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 289
            S N   G IP  I  L++LQ+ L L+ N+F+G IP +++ L  LE+LDLSHN L G++P  +  + SL  L+LSYN L G L K
Sbjct:  752 SRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK 835

HSP 2 Score: 69.3218 bits (168), Expect = 1.885e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = -2

Query:   44 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 289
            S N F G +P+ I SL N+ TL L  NS +GSIP  +  L++L  L+L  N LSG LP ++  L+ L  L LS N LTG +P
Sbjct:  680 SSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIP 761

HSP 3 Score: 68.1662 bits (165), Expect = 5.195e-12
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = -2

Query:   47 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFL 283
            N   G +P+ ++ L+NLQTL L  NSFSG IP  +  L S++ L+L  N L G +PK L  L +L+ LDLS N LTG +
Sbjct:  226 NRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVI 304

HSP 4 Score: 63.1586 bits (152), Expect = 2.172e-10
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = -2

Query:   41 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 289
             DN F G IPS +  L ++Q L L  N   G IP  +T L +L+TLDLS N L+G + +    +  L+ L L+ N+L+G LPK
Sbjct:  248 GDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPK 330

HSP 5 Score: 60.4622 bits (145), Expect = 1.243e-9
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = -2

Query:   41 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 289
            S+    G IP+ IS+ ++L+ L L++N+ +G IPDS+  L  L  L L++N+L G L  S+++LT+L+   L +N L G +PK
Sbjct:  345 SETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPK 427

HSP 6 Score: 59.6918 bits (143), Expect = 2.602e-9
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = -2

Query:   14 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELA 289
             DN   G IP+ I +  +L       N  +GS+P  +  LK+L+TL+L  N+ SG++P  L  L S++ L+L  N+L G +PK    L ELA
Sbjct:  200 QDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPK---RLTELA 288

HSP 7 Score: 59.6918 bits (143), Expect = 2.719e-9
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = -2

Query:   11 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSL-NSLTSLKRLDLSYNKLTGFLPKLPSNLLELAL 283
            N   G IP  ++ L NLQTL L+SN+ +G I +    +  LE L L+ N LSG LPK++ ++ TSLK+L LS  +L+G +P   SN   L L
Sbjct:  274 NQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKL 365

HSP 8 Score: 58.9214 bits (141), Expect = 3.898e-9
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = -2

Query:    2 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP----KLPSNLLELALKAN 289
            ++NY  G IP+ +  L  L  L L+SN F GS+P  + +L ++ TL L  N+L+G +P+ + +L +L  L+L  N+L+G LP    KL S L EL L  N
Sbjct:  656 NNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKL-SKLFELRLSRN 754

HSP 9 Score: 56.9954 bits (136), Expect = 1.663e-8
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = -2

Query:    2 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP----KLPSNLLELALKAN 289
            ++N F G IP  +    NL  L L  N F+G IP +   +  L  LD+S N+LSG +P  L     L  +DL+ N L+G +P    KLP  L EL L +N
Sbjct:  584 TENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPL-LGELKLSSN 682

HSP 10 Score: 56.9954 bits (136), Expect = 1.678e-8
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = -2

Query:   44 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 289
            ++N   G + SSIS+L NLQ   L  N+  G +P  +  L  LE + L  N  SG++P  + + T L+ +D   N+L+G +P
Sbjct:  393 NNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIP 474

HSP 11 Score: 56.9954 bits (136), Expect = 1.931e-8
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = -2

Query:   44 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 289
            S+N   G+IP S+  L  L  L L +NS  G++  S++ L +L+   L HN L GK+PK +  L  L+ + L  N+ +G +P
Sbjct:  369 SNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMP 450

HSP 12 Score: 56.6102 bits (135), Expect = 2.018e-8
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = -2

Query:   44 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 283
            N   G++P  I  L  L+ + L  N FSG +P  +     L+ +D   N LSG++P S+  L  L RL L  N+L G +P
Sbjct:  419 NNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP 498

HSP 13 Score: 56.225 bits (134), Expect = 2.629e-8
Identity = 39/97 (40.21%), Postives = 50/97 (51.55%), Query Frame = -2

Query:    2 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLP---SNLLELALKAN 283
            N F GRIP +   +  L  L ++ NS SG IP  +   K L  +DL++N LSG +P  L  L  L  L LS NK  G LP      +N+L L L  N
Sbjct:  610 NQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGN 706

HSP 14 Score: 55.8398 bits (133), Expect = 4.504e-8
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = -2

Query:   53 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTG 286
            +N   G IP+S+ +   +  + L  N  SGSIP S   L +LE   + +N+L G LP SL +L +L R++ S NK  G
Sbjct:  490 ENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNG 567

HSP 15 Score: 55.0694 bits (131), Expect = 6.949e-8
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = -2

Query:  107 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSL 289
            S N F GRIPS+IS+L  L++L L+ N   G +P  +  +KSL  L+LS+N L GKL K  
Sbjct:  777 SYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQF 837

HSP 16 Score: 55.0694 bits (131), Expect = 8.078e-8
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = -2

Query:   44 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 283
            N   G IPSSI  L++L  L L  N   G+IP S+     +  +DL+ N LSG +P S   LT+L+   +  N L G LP
Sbjct:  467 NRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLP 546

HSP 17 Score: 54.6842 bits (130), Expect = 1.036e-7
Identity = 32/82 (39.02%), Postives = 42/82 (51.22%), Query Frame = -2

Query:   44 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLP 289
             DN   G IP +  +L NLQ L L S   +G IP     L  L+TL L  N L G +P  + + TSL     ++N+L G LP
Sbjct:  152 GDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLP 233

HSP 18 Score: 53.1434 bits (126), Expect = 2.662e-7
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = -2

Query:    5 NYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELALKA 283
            N   G IPS + SL NL++L L  N  +G+IP++   L +L+ L L+   L+G +P     L  L+ L L  N+L G +P    N   LAL A
Sbjct:  130 NLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFA 222

HSP 19 Score: 53.1434 bits (126), Expect = 3.128e-7
Identity = 35/116 (30.17%), Postives = 54/116 (46.55%), Query Frame = -2

Query:   11 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLE-----------------------TLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPKLPSNLLELAL 289
            +DN   G IPSS   L  L+  ++ +NS  G++PDS+  LK+L                        + D++ N   G +P  L   T+L RL L  N+ TG +P+    + EL+L
Sbjct:  513 ADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSL 628

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy Swiss-Prot
Match: PLRX3_ARATH (Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=PEX3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.010e-13
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = -2

Query:   41 SDNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTGFLPK 289
            + N F G IP SI +++NL  +I   NS  G  P  +  L ++   D S N+ +G LP S   LTS++  D+S NKLTGF+P+
Sbjct:  234 AHNKFSGCIPRSIGNMKNLNEIIFKDNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPE 316

HSP 2 Score: 55.8398 bits (133), Expect = 3.498e-8
Identity = 29/78 (37.18%), Postives = 41/78 (52.56%), Query Frame = -2

Query:   53 DNYFFGRIPSSISSLRNLQTLILTSNSFSGSIPDSVTALKSLETLDLSHNALSGKLPKSLNSLTSLKRLDLSYNKLTG 286
            DN   G  PS I  L N+     + NSF+G +P S   L S+E  D+S N L+G +P+++  L  L  L  +YN   G
Sbjct:  259 DNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENICKLPKLVNLTYAYNYFNG 336

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2QYH5_GOSRA	4.956e-88	98.31	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061E129_THECC	2.269e-69	79.66	Leucine-rich repeat (LRR) family protein OS=Theobr...	[more]
B9HS48_POPTR	4.610e-69	77.40	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
B9GHD2_POPTR	1.939e-67	76.27	Uncharacterized protein OS=Populus trichocarpa GN=...	[more]
A0A0D2VAM6_GOSRA	2.350e-67	80.34	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
C6ZS02_SOYBN	7.996e-63	75.14	Leucine-rich repeat disease resistance protein OS=...	[more]
B9RYA6_RICCO	1.383e-61	77.53	Serine-threonine protein kinase, plant-type, putat...	[more]
Q9SHU4_ARATH	1.275e-60	69.66	Leucine-rich repeat-containing protein OS=Arabidop...	[more]
Q8LDD9_ARATH	1.623e-60	69.66	Putative leucine-rich repeat disease resistance pr...	[more]
V7BEZ1_PHAVU	5.534e-60	72.88	Uncharacterized protein OS=Phaseolus vulgaris GN=P...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0005130 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
Y1723_ARATH	2.185e-13	39.82	Leucine-rich repeat receptor-like serine/threonine...	[more]
TD1_MAIZE	2.279e-13	46.34	Leucine-rich repeat receptor-like kinase protein T...	[more]
GSO1_ARATH	2.542e-13	43.24	LRR receptor-like serine/threonine-protein kinase ...	[more]
GSO2_ARATH	2.887e-13	46.43	LRR receptor-like serine/threonine-protein kinase ...	[more]
PLRX3_ARATH	3.010e-13	40.96	Pollen-specific leucine-rich repeat extensin-like ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00019	LEURICHRPT	coord: 43..56 score: 56.59 coord: 22..35 score: 54.32
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 1..75
None	No IPR available	PANTHER	PTHR27000:SF170	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 1..75
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 43..66 e-value: 1.1 score: 18.2 coord: 19..42 e-value: 19.0 score: 11.0
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 3..69 e-value: 3.0E-19 score: 68.3
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 3..70
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 2..56 e-value: 4.6E-11 score: 42.2
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 45..67 score: 6.88
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 21..44 score: 7.227

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0005130 ID=g.arboreum_cottongen_reftransV1_0005130; Name=g.arboreum_cottongen_reftransV1_0005130; organism=Gossypium arboreum; type=contig; length=533bp
AATTTGCTTTTAAAGCAAGTTCCAATAAATTAGACGGCAGTTTCGGTAGA
AATCCAGTGAGTTTGTTGTAACTCAGGTCGAGCCTCTTTAAACTCGTAAG
TGAGTTAAGTGATTTCGGTAATTTCCCGGAAAGAGCATTATGAGAAAGGT
CTAATGTTTCAAGCGATTTGAGAGCCGTGACTGAGTCAGGAATCGAGCCG
GAAAACGAGTTGGATGTTAGAATCAGAGTCTGGAGATTACGTAGAGAAGA
AATGGAAGAAGGTATACGACCGAAGAAATAGTTATCAGAGAGATCGAGTG
TGGTGAGTTGGGTGAGTTGTGAAATGAGTGGGGTGAGTTGACCCGAGTAA
CCAATAGGATCAAGCGTGATTTGGGTGATACGAGTGGCGTCCGGCGAGCA
AGAAACGCCACAAATAAAGCGAGTACGGTGGGGGACGGCGCAAGGGTCGT
CGGAAAAGTCCCATGAAGCTAGGCAAGACCATGATGGGATTGAGCTTTGT
TTGATCGAGGATTTAAAGGCTTTTAAAGCTGAA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Search form

g.arboreum_cottongen_reftransV1_0005130, g.arboreum_cottongen_reftransV1_0005130 (contig) Gossypium arboreum

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