g.arboreum_cottongen_reftransV1_0011547, g.arboreum_cottongen_reftransV1_0011547 (contig) Gossypium arboreum

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A0D2UI48_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G204900 PE=4 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 2.891e-145
Identity = 206/218 (94.50%), Postives = 213/218 (97.71%), Query Frame = 1

Query:  286 GILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANGSLGSMSVNSAN 939
            GILLCAKTKVAKTRLAAYFADGTS VGATSNRKA RSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVA+GLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGG+PRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHA++LVLSHPTTNEMI ITAPLS+ILQTSDEANGS GS+S+NS N
Sbjct:    2 GILLCAKTKVAKTRLAAYFADGTSLVGATSNRKAARSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVAKGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGEPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAHRLVLSHPTTNEMIYITAPLSTILQTSDEANGSPGSVSINSGN 219          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A087GX77_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G150800 PE=4 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 3.648e-145
Identity = 206/303 (67.99%), Postives = 254/303 (83.83%), Query Frame = 1

Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDE-SFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSH-PTTNEMISITAPLSSILQTSDEAN 903
            VVKDPNT+L  DS LVYHRLPWKEPD P+ +++LYEDDD++ALNKPSGLQVLPGGLFQQRT+LTQL W   K++S+  + E+HPVPVHRLGRGTSGILLCAKTK+AKT+LAAYFA+GTSRVG + N   E    RKISKIYRAL  GI+ +D+V+I QPIG+++YPGVA+GLYVASP GKP LSK+ VLERD ++NCTLV+VEI+SGRPHQIRIHL++IGHPL+GDPLY+AGGQP+C   ++VD  +FA+DGGYQRP   VPGDCGY+LHA+Q+ L +   +++++ I A L  ILQTS EA 
Sbjct:   68 VVKDPNTLLRSDSKLVYHRLPWKEPDTPYSIDILYEDDDLIALNKPSGLQVLPGGLFQQRTLLTQLQWCFGKKDSSTKAHESHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSRVG-SGNLDQEGGTGRKISKIYRALADGIVEEDEVVIKQPIGVIQYPGVAKGLYVASPEGKPTLSKLYVLERDRQRNCTLVKVEIQSGRPHQIRIHLAYIGHPLVGDPLYVAGGQPKCCGLDVVDAGAFAKDGGYQRPNQAVPGDCGYHLHAHQVELQNLLNSHKVVKIVALLPPILQTSSEAE 369          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: D7LU41_ARALL (Pseudouridine synthase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_906589 PE=4 SV=1)

HSP 1 Score: 429.869 bits (1104), Expect = 5.968e-145
Identity = 212/309 (68.61%), Postives = 257/309 (83.17%), Query Frame = 1

Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQET-HPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLG------DPLYIAGGQPRCFDPELVDE--SFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSH-PTTNEMISITAPLSSILQTSDE 897
            VVKDPNT+L   S LVYHRLPWKEPD P+ L+VLYEDDD++ALNKPSGLQVLPGGLFQQRTVLTQL W  +K +S   S+E+ HPVPVHRLGRGTSGILLCAKTK+AKT+LAAYFA+GTS VG + N + E    RK+SKIYRAL  GI+ +D+V+I QP+G+VRYPGVA+GLYVASP GKPA SKV VLERD+++NCTLV+VEI+SGRPHQIRIHL+++GHPLL       DPLY+AGGQP+CFDP+LVD+  +FA+DGGY+RP   VPGDCGY+LHA+Q+ L +   T++++ I APL  ILQTS E
Sbjct:   70 VVKDPNTLLRSGSKLVYHRLPWKEPDTPYSLQVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFRKNDSYTGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVG-SGNLEQECGKGRKLSKIYRALADGIVEEDEVVIKQPLGVVRYPGVAKGLYVASPEGKPAFSKVAVLERDKQKNCTLVKVEIQSGRPHQIRIHLAYMGHPLLASYNCMRDPLYVAGGQPKCFDPDLVDDDAAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNTHKVVKIVAPLPPILQTSSE 377          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: F4J6V3_ARATH (RNA pseudourine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=4 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 2.172e-140
Identity = 211/320 (65.94%), Postives = 254/320 (79.38%), Query Frame = 1

Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQET-HPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLL-----------------GDPLYIAGGQPRCFDPELVDE--SFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSH-PTTNEMISITAPLSSILQTSDE 897
            VVKDPNT+L   S LVY RLPWKEPD P+ LEVLYEDDD++ALNKPSGLQVLPGGLFQQRTVLTQL W   K +S + S+E+ HPVPVHRLGRGTSGILLCAKTK+AKT+LAAYFA+GTS VG + N   E    RK+SKIYRAL  GI+ +D+V+I QPIG+VRYPGVA+GLYVASP GKPA SKV VLERD ++NC+LV+VEI+SGRPHQIRIHL+++GHPL+                 GDPLY+AGGQP+CFDP+LVD+  +FA+DGGY+RP   VPGDCGY+LHA+Q+ L +   T++++ I APL  ILQT  E
Sbjct:   97 VVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVG-SGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVEMTMFTGSECLRADQSAGDPLYVAGGQPKCFDPDLVDDAAAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNTHKVVKIVAPLPPILQTRCE 415          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A0A0KS17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G492340 PE=4 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 6.792e-138
Identity = 204/300 (68.00%), Postives = 239/300 (79.67%), Query Frame = 1

Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEA 900
            V+ DP TIL   S LVY RLPWKEPD P+LLE+LYED++M+ALNKPSGLQVLPGG+FQQRTVLTQL W   KQ+ ++ S+E HPVPVHRLGRGTSGILLCAKTK+A+T+ AAYFA+GTS V    N   E    RKISKIYRALVTGI+ DD+V +DQPIG ++YPGVA+GLYVA+PSGKPA              C+ V VEI+SGRPHQIRIHLS IGHPLLGDPLY+AGGQP C   E+V++SFA+DGGY+RPT PVPGDCGYYLHA+QL+L HP TNE++ I APL  IL+T  EA
Sbjct:  193 VITDPETILRIGSDLVYRRLPWKEPDTPYLLEILYEDNEMIALNKPSGLQVLPGGVFQQRTVLTQLQWWSSKQSFSV-SEELHPVPVHRLGRGTSGILLCAKTKLARTQFAAYFAEGTSSV--RRNSTMEEGTKRKISKIYRALVTGIIHDDEVSVDQPIGRMQYPGVAQGLYVATPSGKPA--------------CSKVNVEIQSGRPHQIRIHLSSIGHPLLGDPLYVAGGQPNCLHSEVVNQSFAEDGGYERPTKPVPGDCGYYLHAHQLILYHPKTNEVVKIIAPLPPILRTRIEA 475          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: PUS5_ARATH (RNA pseudouridine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=2 SV=2)

HSP 1 Score: 428.328 bits (1100), Expect = 1.338e-146
Identity = 211/303 (69.64%), Postives = 254/303 (83.83%), Query Frame = 1

Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQET-HPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDE--SFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSH-PTTNEMISITAPLSSILQTSDE 897
            VVKDPNT+L   S LVY RLPWKEPD P+ LEVLYEDDD++ALNKPSGLQVLPGGLFQQRTVLTQL W   K +S + S+E+ HPVPVHRLGRGTSGILLCAKTK+AKT+LAAYFA+GTS VG + N   E    RK+SKIYRAL  GI+ +D+V+I QPIG+VRYPGVA+GLYVASP GKPA SKV VLERD ++NC+LV+VEI+SGRPHQIRIHL+++GHPL+GDPLY+AGGQP+CFDP+LVD+  +FA+DGGY+RP   VPGDCGY+LHA+Q+ L +   T++++ I APL  ILQT  E
Sbjct:   67 VVKDPNTLLRSGSKLVYSRLPWKEPDTPYSLEVLYEDDDLIALNKPSGLQVLPGGLFQQRTVLTQLQWCFGKNDSYIGSRESPHPVPVHRLGRGTSGILLCAKTKLAKTKLAAYFAEGTSLVG-SGNLDQECGTGRKLSKIYRALADGIVEEDEVVIKQPIGVVRYPGVAQGLYVASPEGKPAFSKVFVLERDREKNCSLVKVEIQSGRPHQIRIHLAYMGHPLVGDPLYVAGGQPKCFDPDLVDDAAAFAEDGGYRRPNQAVPGDCGYHLHAHQVELPNLLNTHKVVKIVAPLPPILQTRCE 368          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: PUS5_ORYSJ (RNA pseudouridine synthase 5 OS=Oryza sativa subsp. japonica GN=Os03g0288500 PE=2 SV=2)

HSP 1 Score: 400.208 bits (1027), Expect = 4.572e-135
Identity = 204/305 (66.89%), Postives = 236/305 (77.38%), Query Frame = 1

Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQ----ETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVD--ESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDE 897
            V  DP+ IL   S LVYHRLPW+EP  PHLL+VLYEDDDM+ALNKPSGLQVLP GLFQQRTVL QL     K  S+  S+    ++HPVPVHRLGRGTSG+LLCAKTK+AK +LAAYFA+G +  G  S  + +    RKISK YRALVTGIL +D+V+I QPIG+VRYPGVA GLY A  SGKPA+SKV VLER +  N TL+QVEI SGRPHQIRIHL++IGHPL+ DPLY  GGQP+  +PE     +SFA DGGY+RP  PVPGDCGY+LHA+ LVL HPTTNEMI ITAPL  ILQT +E
Sbjct:   84 VATDPDMILREGSKLVYHRLPWQEPFAPHLLDVLYEDDDMIALNKPSGLQVLPKGLFQQRTVLAQLQLKDWKMPSSFCSKRKDAQSHPVPVHRLGRGTSGLLLCAKTKLAKAQLAAYFAEGATNAG-KSRDETDICKARKISKFYRALVTGILENDEVMITQPIGLVRYPGVAEGLYAACSSGKPAMSKVRVLERLKIHNHTLIQVEIHSGRPHQIRIHLAYIGHPLVDDPLYGIGGQPKFDEPEPTSTADSFAYDGGYERPLQPVPGDCGYHLHAHWLVLCHPTTNEMIKITAPLPHILQTREE 387          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: Y1592_SYNY3 (Uncharacterized RNA pseudouridine synthase slr1592 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1592 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.070e-46
Identity = 113/295 (38.31%), Postives = 153/295 (51.86%), Query Frame = 1

Query:   10 DPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSD 894
            DP   L     L Y R PW EP+VP  L VL+ D+D+ A++KPSGL VLPGG F   TVL QL   ++    +L        P+HRLG GTSG+LL  ++ + +  L+  F +   R                  KIYR ++    + +K    Q IG + YP +   +Y AS  GKPA S   +L R  ++  T ++VEI +GRPHQIRIHL+ +G+PLLGD LY  GG P       ++   A+           P D GY LH+YQL   H  T + I +TAPL   L T +
Sbjct:   34 DPTYPLQAGQTLTYWRSPWVEPEVPLQLSVLHRDEDLWAIDKPSGLPVLPGGDFVYHTVLEQL--KIQYPQESL-------FPLHRLGTGTSGLLLLGRSTLGRRELSRQFREHICR------------------KIYRTVIGPCDLPEKFECHQAIGKIPYPQLGY-IYAASSHGKPAQSYGRILARSPEK--TWLEVEIRTGRPHQIRIHLASLGYPLLGDRLYGPGGVP-------INCRTAR-----------PSDGGYTLHSYQLGFLHLHTQQAIKLTAPLPPELITPE 280          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_HAEIN (Ribosomal large subunit pseudouridine synthase D OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rluD PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.076e-28
Identity = 89/265 (33.58%), Postives = 135/265 (50.94%), Query Frame = 1

Query:   91 LEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWS----VKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQD-GGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            L ++YEDDD++ +NKP  L V PG      TVL  L +     V+   + +         VHRL + T+G+++ AKT  A+T+L                R  ++   RKI++ Y A+ +GI+     + DQP+   R+    R L    P GKPA++   ++E    +N T +++ +E+GR HQIR+H++ I HPLLGD  Y  GG+PR   P+   E F +    ++R            LHA  L L+HP T EM+   APL
Sbjct:   83 LNIVYEDDDIIVINKPKDLVVHPGAGNPNGTVLNALLYHYPPIVEVPRAGI---------VHRLDKDTTGLMVVAKTIPAQTKLV---------------RDLQK---RKITREYEAVASGIMTKGGTV-DQPMA--RH-ATKRTLMAVHPMGKPAVTHYRIME--NYRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQTY--GGRPRP--PKNASEDFMEVLRNFKRQA----------LHAVMLRLAHPITGEMMEWYAPL 300          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: Y1758_AQUAE (Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus (strain VF5) GN=aq_1758 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.498e-28
Identity = 83/254 (32.68%), Postives = 122/254 (48.03%), Query Frame = 1

Query:   91 LEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMI 852
            + ++YED+D+  + KP GL V P   +   T++  L + +K  +S    +   P  VHRL + T+G+++ AK   A   L   F +                  RK  K Y+ LV G++  D   ID PI   R+P V R  +     GK AL++  VL+R EK   TL++V+I +GR HQIR+H + IGHP+LGD  Y  G +      EL+                + G+C   L AY L   HPT  E +
Sbjct:   82 INIIYEDEDIAVVEKPCGLVVHPSPGYTSGTLVNALLYHIKDLSSIGGVER--PGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQE------------------RKTEKFYKVLVKGLVKKDYGAIDTPIA--RHP-VDRKRFWVRKEGKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVHFASIGHPVLGDRTY--GFKSSSVPKELLS---------------LMGECN-MLIAYHLGFYHPTKGEWM 294          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_VIBPA (Ribosomal large subunit pseudouridine synthase D OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluD PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.523e-28
Identity = 96/309 (31.07%), Postives = 142/309 (45.95%), Query Frame = 1

Query:    1 VVKDPNT-ILSGDSVLVYHRLP----WKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVP----VHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEA 900
            VV  P T ++ G+ + +   L     W+  D+P  L+++YEDDD++ +NKP    V PG      TVL  L           +  +   VP    VHRL + T+G+++ AKT  A+TRL                        R I++ Y A+  G +     + DQPIG  R+    R L   +P GKPA++   V E    +  T +++ +E+GR HQIR+H+S++ HPLLGD  Y  GG+ R              G  Q  T+ + G     LHA  L   HP T E +   AP+   +    EA
Sbjct:   51 VVTKPRTKVMGGEEITLQAELEDEERWEAQDIP--LDIVYEDDDIIVINKPRDFVVHPGAGTPDGTVLNALLH---------HYPDIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQ------------------KRNITREYEAIAIGRMTAGGKV-DQPIG--RH-STKRTLMAVAPLGKPAVTHYRVAE--HFREHTRIRLRLETGRTHQIRVHMSYLQHPLLGDTAY--GGRARI-----------PTGASQELTDMIRGFDRQALHAVMLRFEHPITGEELEFHAPVPDDMVAMTEA 311          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_PASMU (Ribosomal large subunit pseudouridine synthase D OS=Pasteurella multocida (strain Pm70) GN=rluD PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.763e-28
Identity = 89/267 (33.33%), Postives = 134/267 (50.19%), Query Frame = 1

Query:   91 LEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVP----VHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQD-GGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSS 876
            L ++YEDDD++ +NKP    V PG      TVL  L +         +      VP    VHRL + T+G+++ AKT  A+T+L                R  ++   RKI++ Y A+  GI+     ++DQP+   R+P   R      P GKPA++   ++ER   +N T +++ +E+GR HQIR+H++ I HPLLGD  Y  GG+PR   P+   E   Q    ++R            LHA  L L+HP T E++   APL +
Sbjct:   83 LNIVYEDDDILVINKPKDFVVHPGAGNASGTVLNALLY---------HYPAIAEVPRAGIVHRLDKDTTGLMVIAKTIPAQTKLV---------------RDLQK---RKITREYEAIACGIMTKGG-MVDQPMA--RHP-TKRTHMAVHPMGKPAVTHYRIMER--FRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQTY--GGRPRP--PKNASEELMQTLRDFKRQA----------LHAIMLRLAHPITGELMEWHAPLPT 302          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_VIBVU (Ribosomal large subunit pseudouridine synthase D OS=Vibrio vulnificus (strain CMCP6) GN=rluD PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.134e-27
Identity = 94/299 (31.44%), Postives = 138/299 (46.15%), Query Frame = 1

Query:    1 VVKDPNT-ILSGDSVLVYHRLP----WKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVP----VHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            VV  P T ++ G+ + V   L     W+  D+P  L+++YEDDD++ +NKP    V PG      TVL  L +         +  E   VP    VHRL + T+G+++ AKT  A+TRL                        R I++ Y A+  G +     + D+PIG  R+    R L   SP GKPA++   V E   +   T +++ +E+GR HQIR+H+S++ HPLLGD  Y  GG+ R              G  +  T  +       LHA  L   HP T E +   AP+
Sbjct:   51 VVTKPRTKVMGGEVITVLAELEDEVRWEAQDIP--LDIVYEDDDILVINKPRDFVVHPGAGTPDGTVLNALLF---------HCPEVAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQ------------------KRNITREYEAIAIGRMTAGGKV-DKPIG--RH-ATKRTLMAVSPMGKPAVTHFRVAEHFREH--TRIRLRLETGRTHQIRVHMSYLQHPLLGDAAY--GGRARI-----------PAGASEDVTAMIRNFDRQALHAVMLRFEHPITGEEMEFHAPV 301          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_PSEAE (Ribosomal large subunit pseudouridine synthase D OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rluD PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.250e-27
Identity = 90/269 (33.46%), Postives = 132/269 (49.07%), Query Frame = 1

Query:   64 WKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            W   D+   LE++YED+ ++ ++KP+GL V P    Q  T+L  L + V    +   +       VHRL + T+G+++ AKT  A T+L A                      R +S+IY A+V G++     I D PIG  R+ GV R       +GK A+S   VLER      T  +V++E+GR HQIR+H+S IG+PL+GDP+Y  GG+ R   P +  ++  Q           P      LHA  L L HP T   +   +PL
Sbjct:   76 WLAQDIE--LEIVYEDEHILVIDKPAGLVVHPAAGHQDGTLLNALLYHVPDIANVPRAG-----IVHRLDKDTTGLMVVAKTLEAHTKLVAQLQ------------------ARSVSRIYEAIVIGVITSGGTI-DAPIG--RH-GVQRQKMAVVDAGKVAVSHYRVLERFRAHTHT--RVKLETGRTHQIRVHMSHIGYPLVGDPVY--GGRFRI--PPVASQTLVQ------TLREFPRQA---LHARFLELDHPATGVRMKWESPL 300          

BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_VIBCH (Ribosomal large subunit pseudouridine synthase D OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rluD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.143e-27
Identity = 91/299 (30.43%), Postives = 138/299 (46.15%), Query Frame = 1

Query:    1 VVKDPNT-ILSGDSVLVYHRLP----WKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVP----VHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            V+  P T ++ G+ + V   L     W+  D+P  L ++YEDDD++ +NKP    V PG     +TVL  L +         +      VP    VHRL + T+G+++ AKT  A+TRL                        R +++ Y A+V G +     +ID+PIG        R L   SP GK A++   V E    +  T +++ +E+GR HQIR+H++++ HPLLGD  Y  GG+ R   P+         G  +  T  +       LHA  L   HP T E +   AP+
Sbjct:   51 VITKPRTKVMGGEVITVQAELEDEQRWEAQDLP--LNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALLF---------HYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQ------------------KRDVTREYEAIVIGTMTAGG-MIDKPIG---RHSTKRTLMSVSPMGKHAVTHYRVAE--HFREHTRLRLRLETGRTHQIRVHMAYLQHPLLGDTAY--GGRARI--PK---------GATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAPV 301