g.arboreum_cottongen_reftransV1_0011547, g.arboreum_cottongen_reftransV1_0011547 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0011547
Unique Nameg.arboreum_cottongen_reftransV1_0011547
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1225
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr8chromosomeg.arboreum_cottongen_reftransV1_0011547:1..1225 .
Chr8:92664566..92671376 -		n/a
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A0B0MMC9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21699 PE=4 SV=1)

HSP 1 Score: 642.884 bits (1657), Expect = 0.000e+0
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANGSLGSMSVNSAN 939
            VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANGSLGSMSVNSAN
Sbjct:   70 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANGSLGSMSVNSAN 382
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A0D2UG27_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G204900 PE=4 SV=1)

HSP 1 Score: 619.772 bits (1597), Expect = 0.000e+0
Identity = 301/313 (96.17%), Postives = 308/313 (98.40%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANGSLGSMSVNSAN 939
            VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTS VGATSNRKA RSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVA+GLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGG+PRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHA++LVLSHPTTNEMI ITAPLS+ILQTSDEANGS GS+S+NS N
Sbjct:   70 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSLVGATSNRKAARSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVAKGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGEPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAHRLVLSHPTTNEMIYITAPLSTILQTSDEANGSPGSVSINSGN 382
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A0D2VCZ3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G204900 PE=4 SV=1)

HSP 1 Score: 539.265 bits (1388), Expect = 0.000e+0
Identity = 262/274 (95.62%), Postives = 269/274 (98.18%), Query Frame = 1 
Query:  118 MVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANGSLGSMSVNSAN 939
            MVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTS VGATSNRKA RSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVA+GLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGG+PRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHA++LVLSHPTTNEMI ITAPLS+ILQTSDEANGS GS+S+NS N
Sbjct:    1 MVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSLVGATSNRKAARSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVAKGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGEPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAHRLVLSHPTTNEMIYITAPLSTILQTSDEANGSPGSVSINSGN 274
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A061FUW1_THECC (Pseudouridine synthase family protein OS=Theobroma cacao GN=TCM_046955 PE=4 SV=1)

HSP 1 Score: 526.939 bits (1356), Expect = 0.000e+0
Identity = 253/309 (81.88%), Postives = 279/309 (90.29%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANGSLGSMSV 927
            VV+DPNTIL G S LVYHRLPWKEPD PH LEVLYEDDDM+ALNKPSGLQVLPGGLFQQRTVLTQL W ++KQ S+L SQE+HPVPVHRLGRGTSGILLCAKTK AKT LAAYFADGTS +GA SNRK + S TRKISKIYRALVTGIL +DKV+I+QPIGIV+YPGVA+GLYVASPSGKPALSKVEVLE+DE+QN TLVQV+IESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFD E VDE++AQDGGYQRP NPVPGDCGYYLHA++L+LSHPTT+E+I+ITAPL  +LQT DE   S  S S+
Sbjct:   70 VVRDPNTILRGSSELVYHRLPWKEPDAPHALEVLYEDDDMIALNKPSGLQVLPGGLFQQRTVLTQLSWRMRKQTSSLASQESHPVPVHRLGRGTSGILLCAKTKAAKTCLAAYFADGTSLIGANSNRKMQPSCTRKISKIYRALVTGILGEDKVVINQPIGIVQYPGVAKGLYVASPSGKPALSKVEVLEKDEQQNHTLVQVQIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDSEFVDENYAQDGGYQRPVNPVPGDCGYYLHAHRLLLSHPTTDEIINITAPLPPVLQTQDEVRRSRESQSI 378
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A067K0H9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23951 PE=4 SV=1)

HSP 1 Score: 484.182 bits (1245), Expect = 3.023e-166
Identity = 236/300 (78.67%), Postives = 258/300 (86.00%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEA 900
            VVK+ NT L   S LVYHRLPW+EPD P++L++LYEDDDM+ALNKPS LQVLPGGLFQQRTVLTQL W  +KQ S+L SQE+HPVPVHRLGRGTSGILLCAK+K+AKTR+AAYFADGTS VG  S+        RKISKIYRALV GI+V+DKVII QPIG VRYPGVA+GLYVASPSGKPALSKVEVLERD + N TLVQVEIESGRPHQIRIHLSFIGHPLLGDPLY  GGQP+CFD E VDESFAQDGGYQRPT PVPGDCGYYLHA+QL L HPTTNE+I +TAPL S LQT  EA
Sbjct:   85 VVKESNTKLRSGSELVYHRLPWREPDAPYMLQILYEDDDMIALNKPSCLQVLPGGLFQQRTVLTQLQWWARKQTSSLASQESHPVPVHRLGRGTSGILLCAKSKLAKTRIAAYFADGTSLVGDNSDTGTLLVKRRKISKIYRALVVGIIVEDKVIIKQPIGTVRYPGVAKGLYVASPSGKPALSKVEVLERDVQGNHTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYDVGGQPKCFDSEFVDESFAQDGGYQRPTKPVPGDCGYYLHAHQLSLLHPTTNEVIKVTAPLPSNLQTRAEA 384
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: B9HLN2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s04160g PE=4 SV=1)

HSP 1 Score: 470.315 bits (1209), Expect = 5.424e-161
Identity = 233/300 (77.67%), Postives = 252/300 (84.00%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNE-MISITAPLSSILQTSDE 897
            VVK+P  IL     LVYHRLPW+EPD P+LL+VLYEDDDMVALNKP GLQVLPGGLFQQRTVL QL W   K +S+L  Q +HPVPVHRLGRGTSGILLCAKTKVAKT LAAYFADGTS +G +SN   E+S  RKISKIYRALV GIL  DK+II QPIG +RYPGVA+GLYVASPSGKPALSKVEVLERD + N TLVQVEIESGRPHQIRIHLSFIGHPLLGDPLY  GGQP CFD E  DESFA+DGGY+RP  PVPGDCGYYLHA+QLVLSHPT NE +I ITAPL SIL+T  E
Sbjct:   73 VVKEPKAILRDGMELVYHRLPWREPDAPYLLQVLYEDDDMVALNKPPGLQVLPGGLFQQRTVLMQLQWRASKGSSSLAIQGSHPVPVHRLGRGTSGILLCAKTKVAKTSLAAYFADGTSLIGDSSNANMEQSKRRKISKIYRALVNGILNQDKIIIKQPIGTMRYPGVAKGLYVASPSGKPALSKVEVLERDSQLNQTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYDVGGQPMCFDSEHEDESFAEDGGYERPAKPVPGDCGYYLHAHQLVLSHPTKNEQVIKITAPLPSILRTQAE 372
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: W9RIS0_9ROSA (RNA pseudourine synthase 5 OS=Morus notabilis GN=L484_013432 PE=4 SV=1)

HSP 1 Score: 468.003 bits (1203), Expect = 4.389e-160
Identity = 226/301 (75.08%), Postives = 255/301 (84.72%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEAN 903
            VV+DP+TILS  S LVYHRLPWKEP  P++LE+LYED DM+AL+KPS LQVLPGGLFQQRTVLTQL W   KQ+S+L   E +PVPVHRLGRGTSGILLCAKTK AKT+LAAYFADGTS VG  S    E +  RKI KIYRALVTGI+ +DKVI++QPIG V+YPGVA+GLYVASPSGKPALSKVEVLERD ++NCTLV+VEI+SGRPHQIRIHLSFIGHPLLGDPLY+ GG+PRCFDPE VD SFAQDGG+ RP  PVPGDCGY LHA+ + LSHPTTNE+I ITAPL  +L T  EA 
Sbjct:   72 VVRDPDTILSIGSELVYHRLPWKEPGAPYILEILYEDGDMIALDKPSELQVLPGGLFQQRTVLTQLQWRATKQSSSLVCCEPNPVPVHRLGRGTSGILLCAKTKFAKTQLAAYFADGTSYVGGNSKNNLELNARRKILKIYRALVTGIVCEDKVIVEQPIGTVQYPGVAKGLYVASPSGKPALSKVEVLERDVEKNCTLVKVEIQSGRPHQIRIHLSFIGHPLLGDPLYVVGGRPRCFDPEFVDGSFAQDGGFPRPAKPVPGDCGYTLHAHHVSLSHPTTNEVIEITAPLPPVLWTRQEAQ 372
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A068TUP4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029410001 PE=4 SV=1)

HSP 1 Score: 460.299 bits (1183), Expect = 1.799e-156
Identity = 221/302 (73.18%), Postives = 253/302 (83.77%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEANG 906
            V+ DPNTIL   S LVYHRLPWKEP  P+LLEVL+ED+D++ALNKPSGLQVLPGGLFQQRTVL+QL W   K  S+   ++ H VPVHRLGRGTSG+LLCAKTK+AK+ LAAYFADGTS VG  S   A  + TRKISK YRALV+GI+  D+V+IDQPIG+V+YPGVA+GLYVAS SGKPALSKV +LER+ K + TLVQVEI+SGRPHQIRIHLSFIGHPLLGDPLY+AGGQP CFDPE +DE FAQDGGYQRP NPVPGDCGY+LHA+QL L+HPTT+E I I APL SIL T +E  G
Sbjct:  117 VITDPNTILRAGSELVYHRLPWKEPHAPYLLEVLFEDNDLIALNKPSGLQVLPGGLFQQRTVLSQLEWRTNKGTSS--CKQPHAVPVHRLGRGTSGVLLCAKTKLAKSCLAAYFADGTSAVGNESCNNARFNSTRKISKFYRALVSGIIHQDQVVIDQPIGLVKYPGVAKGLYVASASGKPALSKVSILERNVKNSSTLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVAGGQPSCFDPEFIDEGFAQDGGYQRPENPVPGDCGYHLHAHQLFLAHPTTHEPIKIVAPLPSILATEEECRG 416
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: A0A059BGP1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02814 PE=4 SV=1)

HSP 1 Score: 457.603 bits (1176), Expect = 5.958e-156
Identity = 217/301 (72.09%), Postives = 255/301 (84.72%), Query Frame = 1 
Query:    1 VVKDPNTILSGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEAN 903
            VV DPN  +S    +VYHRLPWKEPD P+ L +LYEDD+M+ALNKPSGLQVLPGGLFQQRTVL+QL W   KQ++ L+SQE  PVPVHRLGRGTSGILLCAKTK+AK+RL+ YFADGTS VG   N   E S  RKISKIYRALV G++ +D+VII +PIG+++YPGVA+GLYVASPSGKPALSKV+VLER+ + NC+LVQVEI+SGRPHQIRIHLSFIGHPLLGDPLY++GG+P CFD + VDE FAQDGGY RP + VPGDCGY+LHA+QL+LSHP T+E+I ITAPL SILQ+  EA 
Sbjct:   67 VVTDPNESVSAGLEVVYHRLPWKEPDAPYFLGILYEDDNMIALNKPSGLQVLPGGLFQQRTVLSQLQWQDSKQSTLLSSQEPQPVPVHRLGRGTSGILLCAKTKIAKSRLSIYFADGTSLVGGKRNTTKEPSSVRKISKIYRALVNGLVDEDEVIITEPIGVIKYPGVAKGLYVASPSGKPALSKVKVLERNVQGNCSLVQVEIQSGRPHQIRIHLSFIGHPLLGDPLYVSGGKPGCFDSQSVDEGFAQDGGYCRPQHAVPGDCGYFLHAHQLLLSHPVTDEVIKITAPLPSILQSQGEAQ 367
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Match: V4T8D9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033672mg PE=4 SV=1)

HSP 1 Score: 451.055 bits (1159), Expect = 1.853e-154
Identity = 230/304 (75.66%), Postives = 260/304 (85.53%), Query Frame = 1 
Query:   28 SGDSVLVYHRLPWKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQTSDEA---NGSLGSMSVN 930
            S  S LVYHRLPWKEPDVP+LLEV YEDDD++ALNKPSGLQVLPGGLFQQRTVL QL W   KQ+S+L+SQ +HPVPVHRLGRGTSGILLCAKTK+AKT +AAYFAD TS V A  N   E S  RKI+KIYRALV GI+ +DKVII QPIGIVRYPGVA+GLYVASPSGKPALSKV+VLERD ++NCTLVQVEI+SGRPHQIRIHL+F+GHPLLGDPLY+AGGQP+ FD E  D +FAQDGGY+RP NPVPGDCGYYLHAYQL LSHPTTNE+I ITAPL S+L+T +E    + S+GS  + 
Sbjct:    3 SAGSELVYHRLPWKEPDVPYLLEVFYEDDDLIALNKPSGLQVLPGGLFQQRTVLKQLQWRASKQSSSLSSQASHPVPVHRLGRGTSGILLCAKTKLAKTCIAAYFADKTSVVDA-DNTVMELS-QRKITKIYRALVHGIVDEDKVIIKQPIGIVRYPGVAKGLYVASPSGKPALSKVDVLERDVQRNCTLVQVEIQSGRPHQIRIHLAFLGHPLLGDPLYVAGGQPKSFDSEFADGTFAQDGGYERPVNPVPGDCGYYLHAYQLFLSHPTTNEVIKITAPLPSVLKTREEGREVDKSVGSERIR 304
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_HAEDU (Ribosomal large subunit pseudouridine synthase D OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=rluD PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.303e-26
Identity = 84/263 (31.94%), Postives = 128/263 (48.67%), Query Frame = 1 
Query:   91 LEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQD-GGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSS 876
            L +++EDDD++ +NKP  L V PG      TVL  L +          +       +HRL + T+G+++ AK   A+T L                        R+I++ Y A+ +GI+     + D+P+   R+P   R      P GKPA++   ++ER   +N T +++ +E+GR HQIR+H++ I HPLLGD LY  GG+PR   P+   E+F      +QR            LHA  L L HP   E+I   APL +
Sbjct:   84 LNIVHEDDDIIIINKPKNLVVHPGAGNPDGTVLNALLYYYPPIAEVPRAG-----IIHRLDKDTTGLMVVAKNIPAQTHLVTALQK------------------RRITREYEAIASGIMTQGGKV-DEPMA--RHP-TKRTAMAVHPMGKPAITHYRIMER--FRNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLY--GGRPR--PPKGSSEAFLTVLRAFQRQA----------LHATMLRLEHPINGELIECHAPLPA 303
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_NEIMA (Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=rluD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.329e-26
Identity = 86/263 (32.70%), Postives = 124/263 (47.15%), Query Frame = 1 
Query:   82 PHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            P  L+++YEDD ++ +NKP+GL V P       T+L  L     +      SQ      VHRL + TSG+++ AKT  A+  L     +                  R + +IYRA+  GI+  D  I  Q   I R P     + V    GKPA++ V+VLER      + ++  +E+GR HQIR+H+    HPL GDP+Y   G PR    + V E+    G  Q             LHAY+L  +HP + E +S  AP+
Sbjct:  102 PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPEL-----SQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQE------------------RTVKRIYRAVANGIVPFDGKIETQ---IGRDPHNRLKMAVVKFGGKPAVTHVKVLERYLAH--SYIECSLETGRTHQIRVHMREANHPLAGDPVY---GNPRHPCGDTVKEAVKSLGARQ------------ALHAYRLSFTHPESGETVSFEAPI 321
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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_NEIMB (Ribosomal large subunit pseudouridine synthase D OS=Neisseria meningitidis serogroup B (strain MC58) GN=rluD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.120e-26
Identity = 85/263 (32.32%), Postives = 123/263 (46.77%), Query Frame = 1 
Query:   82 PHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            P  L+++YEDD ++ +NKP+GL V P       T+L  L     +      SQ      VHRL + TSG+++ AKT  A+  L     +                  R + +IYRA+  GI+  D  I  Q   I R P     + V    GKPA++ V+VLER      + ++  +E+GR HQIR+H+    HPL  DP+Y   G PR    + V E+    G  Q             LHAY+L  +HP + E +S  AP+
Sbjct:  102 PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPEL-----SQVPRAGIVHRLDKETSGLMVVAKTLPAQNSLVRQLQE------------------RTVKRIYRAVANGIVPFDGKIETQ---IGRDPHNRLKMAVVKFGGKPAVTHVKVLER--YLTHSYIECSLETGRTHQIRVHMREANHPLAADPVY---GNPRHPCGDTVKEAVKSLGARQ------------ALHAYRLSFTHPESGETVSFEAPI 321
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: YLYB_BACSU (Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) GN=ylyB PE=3 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.988e-24
Identity = 84/266 (31.58%), Postives = 119/266 (44.74%), Query Frame = 1 
Query:   82 PHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQL---CWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            P  L++ YED D++ +NKP G+ V P       T++  L   C  +   N  +      P  VHR+ + TSG+L+ AK  +A   L               N+   ++ TRK    Y A+V G++  D   ID PIG  +     R     +  GK A++   VLER   Q+ TLV+ ++E+GR HQIR+H+ +IG PL GDP Y   G  +  D                         G  LHA  L   HP T E +   APL
Sbjct:   77 PMDLDIYYEDQDVLVVNKPRGMVVHPAPGHLTGTLVNGLMAHCTDLSGINGVMR-----PGIVHRIDKDTSGLLMVAKNDMAHESLV--------------NQLVNKTVTRK----YTAVVHGLISHDDGTIDAPIGRDKKD---RQSMTVTRDGKNAVTHFHVLER--FQDFTLVECQLETGRTHQIRVHMKYIGFPLAGDPKY---GPRKTIDFN-----------------------GQALHAGVLGFDHPRTGEYVEFEAPL 288
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: Y723_CHLP8 (Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_0723 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.734e-24
Identity = 80/266 (30.08%), Postives = 125/266 (46.99%), Query Frame = 1 
Query:   76 DVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIV-RYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            D+P  + +LYEDDD++ ++K +G+ V P       T+   +   + K    L+  E  P  VHRL + TSG+++ AK   A  +LA  FA+                  R++ K+Y+A+V G+   +   I   IG   +   V          GK A++  +V+E  +    +L+ V + +GR HQIR+HL  +GH +LGD  Y  G  PR          F++   + R  N +       LHA  L    PTT E +S +APL
Sbjct:   74 DIP--ITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFAN------------------RQVEKVYKAIVWGVPKAESGTIKTNIGRSHKNRKVMANFPYEGAEGKHAITDYQVVE--DLGYFSLMDVTLHTGRTHQIRVHLQHLGHSILGDETY-GGATPRTL-------PFSKSEPFTR--NLLELMSRQALHAQTLRFRQPTTGEPLSFSAPL 307
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_NITEU (Ribosomal large subunit pseudouridine synthase D OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rluD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.020e-24
Identity = 88/260 (33.85%), Postives = 125/260 (48.08%), Query Frame = 1 
Query:   91 LEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            L++L+EDD ++ ++KP+GL V PG      T+L  L       ++   SQ      VHRL + T+G+L+ AKT  A+  LA                       R + + Y ALV G L  D V+ D PIG  R+P + R       +GKPA +   VLE+      TL+   +E+GR HQIR+HL  IGHPL GDP+Y     P   DP   D               +P      LHA+QL L+HP + +++   +PL
Sbjct:  109 LKILFEDDHLIIIDKPAGLVVHPGNGNWHGTLLNALL-----NHAPQLSQVPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQ------------------RTVKRHYLALVLGKLEKDGVV-DAPIG--RHP-IHRTRMAVVQNGKPARTHYRVLEKFTA--STLLHCSLETGRTHQIRVHLLSIGHPLAGDPVY-GRTSP---DPSTADAVVR-----------LPRQA---LHAWQLELTHPHSGQILLWESPL 321
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: YHCT_BACSU (Uncharacterized RNA pseudouridine synthase YhcT OS=Bacillus subtilis (strain 168) GN=yhcT PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.604e-24
Identity = 75/261 (28.74%), Postives = 121/261 (46.36%), Query Frame = 1 
Query:   91 LEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVR-YPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPL 870
            L++L+ED+ M+ +NKP+G+   P    Q  T+   + +  +     +N +      VHRL + TSG ++ AK ++A   L       T                  + + Y A+  G L   K  I+ PIG  R +P   R     SP G+ A++  +V+  + K+  +LV++E+E+GR HQIR+HL+ +GHPL GD LY  GG  +  + +                          LHA ++   HP T+E+I   AP 
Sbjct:   83 LDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAYHYQ-----INGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKT------------------LKRTYTAIAEGKLRTKKGTINSPIGRDRSHPTRRR----VSPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQIRVHLASLGHPLTGDSLY--GGGSKLLNRQA-------------------------LHANKVQAVHPITDELIVAEAPF 289
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUC_VIBPA (Ribosomal large subunit pseudouridine synthase C OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rluC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.743e-23
Identity = 81/273 (29.67%), Postives = 122/273 (44.69%), Query Frame = 1 
Query:   67 KEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSSILQ 885
            K  ++ H+  ++YEDD M+ LNKPSG  V  G         + L +   +    L  Q      VHR+ R TSGILL AK + A   L A F + T                  + K Y ALV G       +++ P+       + R     +P+GKP+ ++ ++LE+ E+   TL+Q    +GR HQIR+H  + GHP+  D  Y      R FD      ++    G  R           +LHA  +   HP+ +E + I AP+ S L+
Sbjct:   88 KVAELEHM--IIYEDDHMLILNKPSGTAVHGG---------SGLKFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKT------------------VKKFYFALVMGQWKSSCKVVNAPLLKNEVNSIVR----VNPNGKPSETRFKILEKFEQ--ATLIQASPITGRTHQIRVHTQYTGHPIAWDDRY----GDRRFD------AYTGQLGLDR----------LFLHAANIKFQHPSNDEWMEINAPMESKLE 305
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: Y1629_SYNY3 (Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1629 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.375e-23
Identity = 88/301 (29.24%), Postives = 142/301 (47.18%), Query Frame = 1 
Query:    1 VVKDPNTIL-SGDSVLVYHRLPWKEP------DVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVPVHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVAR--GLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESFAQDGGYQRPTNPVPGDCGYYLHAYQLVLSHPTTNEMISITAPLSS 876
            V +D N IL +GD ++V   +P   P      ++P  L++LYED+ ++ +NKP+GL V PG      TV+  L             Q   P  VHRL + T+G ++ AKT++A   L     + T+R                  ++Y  +V G   + +  ++ P+G  R+PG  +  G+      G+ A++   +LER    N + ++ ++E+GR HQIR+H   +GHPL+GD LY + G      P                        G  LHA+QL L HP + E+I+  AP+ +
Sbjct:   65 VCQDKNLILKTGDRLVV--NIPELIPLDVVAQNIP--LDILYEDEQLIIINKPAGLVVHPGPGHPDGTVVNALLAHCPDLAGIGGVQR--PGIVHRLDKDTTGAMVVAKTELALHNLQVQLKEKTAR------------------RLYWGIVYGSPKEIQGTVNLPVG--RHPGDRQKMGIVPVEKGGREAVTHWRLLER--IGNHSWLEFQLETGRTHQIRVHSKQMGHPLVGDNLYTSPGSVNVNLP------------------------GQALHAHQLSLIHPVSGEIITAIAPMPA 313
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Match: RLUD_YERPE (Ribosomal large subunit pseudouridine synthase D OS=Yersinia pestis GN=rluD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.068e-22
Identity = 87/262 (33.21%), Postives = 126/262 (48.09%), Query Frame = 1 
Query:   64 WKEPDVPHLLEVLYEDDDMVALNKPSGLQVLPGGLFQQRTVLTQLCWSVKKQNSTLNSQETHPVP----VHRLGRGTSGILLCAKTKVAKTRLAAYFADGTSRVGATSNRKAERSGTRKISKIYRALVTGILVDDKVIIDQPIGIVRYPGVARGLYVASPSGKPALSKVEVLERDEKQNCTLVQVEIESGRPHQIRIHLSFIGHPLLGDPLYIAGGQPRCFDPELVDESF-AQDGGYQRPTNPVPGDCGYYLHAYQLVLSHP 834
            W   ++P  L+++YED+D++ +NKP GL V PG      TVL  L              E   VP    VHRL + T+G+++ AKT  A+TRL                   E    R+I++ Y A+  G +     + D+PI   R+    R      P GKPA +   ++E    +  T +++ +E+GR HQIR+H+S I HPL+GD LY  GG+PR   P+   +SF A   G+ R            LHA  L L HP
Sbjct:   77 WAPQEIP--LDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYP---------EIMDVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV------------------EALQAREITREYEAVAIGNMTAGGRV-DEPIS--RH-STKRTHMAVHPMGKPATTHYRIME--HFRAHTRLRLRLETGRTHQIRVHMSHINHPLVGDQLY--GGRPRP--PKGASDSFIAILRGFDRQA----------LHATMLRLYHP 289
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MMC9_GOSAR0.000e+0100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2UG27_GOSRA0.000e+096.17Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2VCZ3_GOSRA0.000e+095.62Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FUW1_THECC0.000e+081.88Pseudouridine synthase family protein OS=Theobroma... [more]
A0A067K0H9_JATCU3.023e-16678.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9HLN2_POPTR5.424e-16177.67Uncharacterized protein OS=Populus trichocarpa GN=... [more]
W9RIS0_9ROSA4.389e-16075.08RNA pseudourine synthase 5 OS=Morus notabilis GN=L... [more]
A0A068TUP4_COFCA1.799e-15673.18Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A059BGP1_EUCGR5.958e-15672.09Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
V4T8D9_9ROSI1.853e-15475.66Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0011547 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RLUD_HAEDU1.303e-2631.94Ribosomal large subunit pseudouridine synthase D O... [more]
RLUD_NEIMA2.329e-2632.70Ribosomal large subunit pseudouridine synthase D O... [more]
RLUD_NEIMB6.120e-2632.32Ribosomal large subunit pseudouridine synthase D O... [more]
YLYB_BACSU2.988e-2431.58Uncharacterized RNA pseudouridine synthase YlyB OS... [more]
Y723_CHLP84.734e-2430.08Uncharacterized RNA pseudouridine synthase Cpar_07... [more]
RLUD_NITEU5.020e-2433.85Ribosomal large subunit pseudouridine synthase D O... [more]
YHCT_BACSU8.604e-2428.74Uncharacterized RNA pseudouridine synthase YhcT OS... [more]
RLUC_VIBPA1.743e-2329.67Ribosomal large subunit pseudouridine synthase C O... [more]
Y1629_SYNY37.375e-2329.24Uncharacterized RNA pseudouridine synthase slr1629... [more]
RLUD_YERPE1.068e-2233.21Ribosomal large subunit pseudouridine synthase D O... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluB/C/D/E/FPFAMPF00849PseudoU_synth_2coord: 11..188
e-value: 6.8E-25
score: 87.9
NoneNo IPR availablePANTHERPTHR11079CYTOSINE DEAMINASEcoord: 108..283
coord: 1..89
NoneNo IPR availablePANTHERPTHR11079:SF98PROTEIN ZK287.7coord: 108..283
coord: 1..89
IPR006224Pseudouridine synthase, RluC/RluD, conserved sitePROSITEPS01129PSI_RLUcoord: 58..72
IPR020103Pseudouridine synthase, catalytic domainSUPERFAMILY55120Pseudouridine synthasecoord: 2..267

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0011547 ID=g.arboreum_cottongen_reftransV1_0011547; Name=g.arboreum_cottongen_reftransV1_0011547; organism=Gossypium arboreum; type=contig; length=1225bp
GTCGTTAAAGATCCAAATACGATTCTCAGTGGTGATTCAGTTTTAGTTTA
CCATAGGCTTCCGTGGAAAGAACCTGATGTTCCTCACTTGCTTGAAGTTT
TATACGAGGATGATGACATGGTTGCTTTAAACAAGCCTTCTGGTCTTCAA
GTTTTGCCTGGAGGCCTTTTCCAGCAACGAACTGTTTTGACACAGCTTTG
TTGGAGTGTAAAGAAGCAGAACTCTACACTAAACAGTCAAGAAACACATC
CTGTTCCTGTTCATCGCCTAGGAAGGGGTACATCAGGAATATTACTTTGT
GCAAAGACAAAAGTTGCTAAAACTCGCTTAGCAGCATATTTTGCTGATGG
AACATCTCGTGTCGGAGCTACCAGTAATAGGAAAGCTGAACGAAGTGGTA
CTAGGAAAATATCAAAGATATACCGAGCACTTGTGACTGGCATACTTGTT
GATGACAAGGTTATCATCGATCAGCCTATTGGAATTGTGCGATATCCCGG
AGTGGCCAGAGGACTATATGTTGCTTCACCCTCAGGGAAGCCTGCTTTGA
GCAAAGTTGAAGTTCTTGAGAGAGATGAAAAACAAAACTGTACATTGGTT
CAGGTTGAGATTGAGTCCGGACGGCCTCACCAAATACGGATTCATCTTTC
TTTCATAGGACATCCCTTGTTGGGTGATCCACTGTATATTGCTGGGGGCC
AACCAAGGTGTTTTGACCCTGAGCTTGTTGATGAAAGTTTTGCACAAGAT
GGAGGGTACCAGAGGCCTACGAACCCTGTACCAGGAGACTGCGGCTATTA
CTTGCATGCTTATCAACTTGTTCTTTCGCATCCCACCACAAATGAGATGA
TTTCCATCACCGCGCCGCTTTCCTCCATCCTTCAAACGTCAGATGAGGCC
AACGGCTCGCTGGGATCCATGTCCGTCAACTCAGCTAATTGAGAGAACAT
TGCTCATTTAATGGCCTTTTCTACTGGCGATACCGGTAAAATTCGATTAC
TCGATCATCAAGAGTAGTGTCATCTTTTTTATTAGAATTATCATCACGGG
TATAGCTAGGGGCAGGCAACGAACTTGGCCCTCAAAAATGGTGAAACCAC
CTTTTAAACTTTCAGGTTTTGTGAAATTACAAGATAAGACCACTCAAAAA
TTTATAAATCACTTTTGACCCTCAAAACATTTTCTGATTTCACCATGTAT
CATCATGAAGGGAAGGGTTCCAAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR006224PsdUridine_synth_RluC/D_CS
IPR020103PsdUridine_synth_cat_dom_sf
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding