g.arboreum_cottongen_reftransV1_0009519, g.arboreum_cottongen_reftransV1_0009519 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009519
Unique Nameg.arboreum_cottongen_reftransV1_0009519
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length648
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0009519:1..648 .
Chr12:106281808..106283449 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: A0A0D2S2C1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G130800 PE=4 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.453e-59
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MGGC+STSSR TSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV
Sbjct:    1 MGGCVSTSSRSTSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: A0A0B0NCI5_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11203 PE=4 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.339e-58
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MGGCISTSSRRTSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV
Sbjct:    1 MGGCISTSSRRTSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: A0A0D2VYW5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G130800 PE=4 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.520e-58
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MGGC+STSSR TSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV
Sbjct:    1 MGGCVSTSSRSTSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: A0A0D2V5Y4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G130800 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.775e-58
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MGGC+STSSR TSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV
Sbjct:    1 MGGCVSTSSRSTSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: A0A0D2TNT9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G130800 PE=4 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.497e-58
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MGGC+STSSR TSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV
Sbjct:    1 MGGCVSTSSRSTSGSMGRREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: A0A061E4T8_THECC (Phosphatase 2C 52 isoform 1 OS=Theobroma cacao GN=TCM_008018 PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.389e-50
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = -2 
Query:    3 VSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 269
            VSP+C ++GFCGQKRTKRTFSDHVIAL HLPSVPNR+FTNGKSR+SCIFTQQGRKGINQDAMIVWEDFM EDVTFCGVFDGHGPHGHLV
Sbjct:   22 VSPSCFEVGFCGQKRTKRTFSDHVIALQHLPSVPNRIFTNGKSRTSCIFTQQGRKGINQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: W9RAI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022157 PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.268e-49
Identity = 87/110 (79.09%), Postives = 94/110 (85.45%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MGGC+STSS+ T  S    +  SP+C DIGF GQKRTKRTFSDHVIAL HLPS+PNR+F NGKSR+SCIFTQQGRKGINQDAMIVWEDFM ED  FCGVFDGHGPHGHLV
Sbjct:    1 MGGCVSTSSKSTCSSKSNGDTFSPSCWDIGFLGQKRTKRTFSDHVIALQHLPSIPNRIFMNGKSRTSCIFTQQGRKGINQDAMIVWEDFMSEDAIFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: I1M3V2_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.805e-48
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MG C+STSS+ T  S    + ++PTC +IGFCGQK  +RTFSDHV++LH LPS+PNR+FTNGKSRSSCIFTQQGRKGINQDAMIVWEDFM EDVTFCGVFDGHGPHGHLV
Sbjct:    1 MGCCVSTSSQSTCSSGSNGDTIAPTCLEIGFCGQKSARRTFSDHVVSLHQLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: K7LW17_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.802e-48
Identity = 85/110 (77.27%), Postives = 96/110 (87.27%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MG C+STSS+ T  S    + ++PTC +IGFCGQK  +RT SDHV++LH LPS+PNR+FTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV
Sbjct:    1 MGCCVSTSSQSTCSSRSNGDTIAPTCLEIGFCGQKSARRTSSDHVVSLHQLPSLPNRIFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Match: B9RW41_RICCO (Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_1175970 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.155e-48
Identity = 85/110 (77.27%), Postives = 94/110 (85.45%), Query Frame = -2 
Query:    3 MGGCIXXXXXXXXXXXXXREEVSPTCCDIGFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 332
            MG C+STSSR T  S    E V P C  IGFCGQK+TKRTFSDHV+ L HLPS+PNR+FTNGKSR+SCIFTQQGRKGINQDAMI+WEDF+ ED+TFCGVFDGHGPHGHLV
Sbjct:    1 MGACVSTSSRSTCSSRSNGERVPPPCLGIGFCGQKKTKRTFSDHVVTLQHLPSIPNRIFTNGKSRTSCIFTQQGRKGINQDAMIIWEDFLSEDMTFCGVFDGHGPHGHLV 110
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy Swiss-Prot
Match: P2C38_ORYSJ (Probable protein phosphatase 2C 38 OS=Oryza sativa subsp. japonica GN=Os04g0321800 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.613e-12
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = -2 
Query:    3 IFTQQGRKGINQDAMIVWEDF-MPEDVTFCGVFDGHGPHGHLV 128
            ++T +G KG+NQDAM+VWE+F   ED  FCGVFDGHGP+GHLV
Sbjct:  121 LYTMRGNKGVNQDAMLVWENFCSKEDTIFCGVFDGHGPYGHLV 163
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy Swiss-Prot
Match: P2C65_ARATH (Probable protein phosphatase 2C 65 OS=Arabidopsis thaliana GN=At5g01700 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.175e-12
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = -2 
Query:    3 VFTNGKSRSSCIFTQQGRKGINQDAMIVWEDF-MPEDVTFCGVFDGHGPHGHLV 161
            V T G S+   +  +QG+KGINQDAM VWE+F   ED  FCGVFDGHGP GH +
Sbjct:   39 VRTRGSSKHVSMSIKQGKKGINQDAMTVWENFGGEEDTIFCGVFDGHGPMGHKI 92
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy Swiss-Prot
Match: P2C41_ARATH (Probable protein phosphatase 2C 41 OS=Arabidopsis thaliana GN=At3g16800 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.156e-10
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = -2 
Query:    3 VFTNGKSRSSCIFTQQGRKGINQDAMIVWEDF-MPEDVTFCGVFDGHGPHGHLV 161
            V +    R + I + +G KGINQD  IVWE F   ED+TFCG+FDGHGP GH++
Sbjct:   54 VSSESSKRFTSICSNRGEKGINQDRAIVWEGFGCQEDITFCGMFDGHGPWGHVI 107
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy Swiss-Prot
Match: P2C73_ARATH (Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.301e-10
Identity = 30/82 (36.59%), Postives = 42/82 (51.22%), Query Frame = -2 
Query:    3 GFCGQKRTKRTFSDHVIALHHLPSVPNRVFTNGKSRSSCIFTQQGRKGINQDAMIVWEDF-MPEDVTFCGVFDGHGPHGHLV 245
            G C  K      +        +      V   G +  + +F+++G KG+NQD  +VWE F   ED+ FCG+FDGHGP GH V
Sbjct:   25 GNCDAKEAADEMASEAKKKELILKSSGYVNVQGSNNLASLFSKRGEKGVNQDCALVWEGFGCQEDMIFCGIFDGHGPWGHYV 106
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy Swiss-Prot
Match: P2C34_ARATH (Probable protein phosphatase 2C 34 OS=Arabidopsis thaliana GN=At3g05640 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 3.882e-10
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = -2 
Query:    3 TNGKSRSSCIFTQQGRKGINQDAMIVWEDF-MPEDVTFCGVFDGHGPHGHLV 155
             +G +  + +F+++G KG+NQD  IVWE +   ED+ FCG+FDGHGP GH V
Sbjct:   56 ADGSNNLASVFSRRGEKGVNQDCAIVWEGYGCQEDMIFCGIFDGHGPWGHFV 107
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy Swiss-Prot
Match: P2C12_ORYSJ (Probable protein phosphatase 2C 12 OS=Oryza sativa subsp. japonica GN=Os02g0224100 PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 4.762e-7
Identity = 24/53 (45.28%), Postives = 36/53 (67.92%), Query Frame = -2 
Query:    3 VFTNGKSRSSCIFTQQGRKGINQDAMIVWEDFMPEDVTFCGVFDGHGPHGHLV 161
            V + G  + + +F+Q+G+KG NQD++I+ + F  ED  FCGVFDGHG  G  +
Sbjct:   34 VESGGARKVASLFSQRGKKGPNQDSVILCQGFGMEDGVFCGVFDGHGRCGQFI 86
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2S2C1_GOSRA3.453e-5998.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NCI5_GOSAR1.339e-58100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2VYW5_GOSRA2.520e-5898.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2V5Y4_GOSRA2.775e-5898.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2TNT9_GOSRA4.497e-5898.18Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E4T8_THECC3.389e-5091.01Phosphatase 2C 52 isoform 1 OS=Theobroma cacao GN=... [more]
W9RAI5_9ROSA6.268e-4979.09Uncharacterized protein OS=Morus notabilis GN=L484... [more]
I1M3V2_SOYBN1.805e-4877.27Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
K7LW17_SOYBN2.802e-4877.27Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9RW41_RICCO3.155e-4877.27Protein phosphatase-2c, putative OS=Ricinus commun... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009519 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
P2C38_ORYSJ1.613e-1267.44Probable protein phosphatase 2C 38 OS=Oryza sativa... [more]
P2C65_ARATH7.175e-1259.26Probable protein phosphatase 2C 65 OS=Arabidopsis ... [more]
P2C41_ARATH3.156e-1053.70Probable protein phosphatase 2C 41 OS=Arabidopsis ... [more]
P2C73_ARATH3.301e-1036.59Probable protein phosphatase 2C 73 OS=Arabidopsis ... [more]
P2C34_ARATH3.882e-1050.00Probable protein phosphatase 2C 34 OS=Arabidopsis ... [more]
P2C12_ORYSJ4.762e-745.28Probable protein phosphatase 2C 12 OS=Oryza sativa... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009519 ID=g.arboreum_cottongen_reftransV1_0009519; Name=g.arboreum_cottongen_reftransV1_0009519; organism=Gossypium arboreum; type=contig; length=648bp
GCAACGAGATGACCATGTGGACCATGACCATCAAATACACCACAAAAGGT
CACATCTTCCGGCATGAAATCTTCCCATACAATCATGGCATCCTGGTTGA
TTCCCTTGCGACCCTGCTGAGTGAATATACAAGAGCTTCTGCTCTTTCCA
TTAGTGAAAACCCTGTTGGGGACTGAAGGCAAATGGTGCAATGCAATAAC
ATGATCCGAAAATGTTCTCTTAGTCCTCTTCTGCCCACAAAACCCGATAT
CGCAACACGTCGGAGAAACCTCCTCCCTACGGCCCATACTGCCAGAAGTC
CTCCGGCTACTAGTGGAGATACAACCCCCCATTTCGTCGATAAAGTTAGA
AGGACCAGAACCAGAACAGATCTCACGTGAAATAGAAAAAAAAACTATAT
GTAGTTGCTGGAAATGTCAGGCAAAGCCAAATACAATATCAGACCAAAGA
TTCCCCACACATCAGACCATAAGCCACTTTACACCTCAATGTATTAAACT
GGGAATCTTTAAGACACAGTCATATGTAATCCATTGCAGGGTTCCATAGA
TGGATGACAAAACCAGCTGTGACTGAGAGTGGTCTGTATGCAGAAAATTT
CAGCTTGTGTGGAAGAAGCAGTAGCAAAGGCAGCAGAGTTGAGGGACA
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