g.arboreum_cottongen_reftransV1_0000197, g.arboreum_cottongen_reftransV1_0000197 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: A0A068URB3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_47 OS=Coffea canephora GN=GSCOC_T00031650001 PE=4 SV=1) HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0 Identity = 454/678 (66.96%), Postives = 546/678 (80.53%), Query Frame = 3 Query: 483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEG--------KSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADG-GQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489 L+WEV + E E+WI EN DVDL QN ++ ET + ++LIIPLLRYQKEWLAWALKQE+S T+GGILADEMGMGKT QAIALV+AK+++ I EP++ + SS+ P ++ TLVICP+VAV QWVSEIDRFT++GS KVLVYHG+NRG+N+ QFSEYDFVITTYSIVEAEYR+ +MPPK KC +CGK ++ K+SVHLKY+CGPDAIKT QSKQ+RKK S + K++ E D+ + + K+ + + +P KS+LHSVKWERIILDEAH++KDRR +T +AV +L+SLYKWALSGTPLQNRVGELYSLVRFL+IVPYSYY CKDCDC++LDYS+ST CP CPH SVRHFCWWN++VA+PI++ GN G++AM+LLKH+ILK+IVLRRTKKGRAADLALPPRI++LRRD +DIKE DYY SLY+ESQAQFNTY++A T+MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAA R G+I N +VCG+C++ AED VVT+C HVFCK+CLIDFSAS+G +SCPSC++LLTVD T N + Q KTT+KGFK SSI+NRI+L+DFQTSTKI+ALREEIRFMVERDGSAKGIVFSQFTSFLDLI YSL KS + CVQL GSMS+ ARDAAIK FTEDPDC+ Sbjct: 142 LVWEVLQHEIERWIKENEANDVDLSNQNEILAETVEPPANLIIPLLRYQKEWLAWALKQEESTTRGGILADEMGMGKTAQAIALVVAKQEIQKAISEPSLVASAPSSSSTFPAVKGTLVICPLVAVVQWVSEIDRFTTKGSNKVLVYHGSNRGRNIDQFSEYDFVITTYSIVEAEYRRNVMPPKHKCQWCGKLLYEHKMSVHLKYFCGPDAIKTAKQSKQQRKKSNSKTTTSKQNLEFDEDDAFDSNGDMQKRGRKKGAKTSNGIGGSGNAFAYGIPADIGESSSTKKSILHSVKWERIILDEAHYIKDRRSSTTRAVFALQSLYKWALSGTPLQNRVGELYSLVRFLEIVPYSYYYCKDCDCRSLDYSTSTDCPHCPHKSVRHFCWWNRHVASPIKYAGNLGEGRKAMLLLKHRILKSIVLRRTKKGRAADLALPPRIVTLRRDELDIKEEDYYTSLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAGRGGSIRNAPSG---EVCGLCHENAEDAVVTSCTHVFCKSCLIDFSASMGQISCPSCAKLLTVDFTGNKENEDQMPKTTIKGFKPSSIINRIRLDDFQTSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLIHYSLQKSGVSCVQLDGSMSMTARDAAIKRFTEDPDCR 816
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: K4C0N1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g044480.2 PE=4 SV=1) HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0 Identity = 479/799 (59.95%), Postives = 593/799 (74.22%), Query Frame = 3 Query: 132 MQLRSRKRTSNFSTNE--EHSDSSDQADNFIQLDDLSDSETYVRSSDSDLGEEEILDLNHKAVKAAPITISDFT---EPPTNRGNGEQ----ILSE---QNESQFDFNVSXXXXXXXXXXXXXXRSGQP-LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489 M+LRSR +S+ + ++ DSSD+ D + + SD Y+ SSD D+ +E +++L + V + + E + G E+ +++E E + + + K + K + +P L+WE+WE+E++ W+ EN D + Q+ ++TET+ SDLI+PLLRYQKEWL WALKQE+S +GGILADEMGMGKT+QAIALVLAKR++ I ++ S +S LP ++ +LVICPVVAV QWVSEIDRFT++GS K+LVYHG NR KN+ +F+EYDFVITTYS VEAEYRK +MPPKEKC +CGKSF+++KLSVH KY+CGPDA+KT QSKQ+ K K K H + + K K + D D AG+ ++ KS+LHSVKW RIILDEAH+VKDRR NT +A+L+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSYY CKDCDC+ LDYSSS +CP CPH S+RHFCWWN+Y+A+PIQ+ GN G+ AM+LLKHKILK+I+LRRTKKGRAADLALPPRI++LR+D++D+KE DYY SLY+ESQAQFNTY+QAGT+MNNYAHIFDLLTRLRQAVDHPYLVVYSSTA R G+ D EQ+CG+C+DP EDPVVT+C H+FCK+CLIDFSAS+G VSCPSCS LTVD T N G Q SK T+KGF+SSSILNRI L++FQTSTKIEALREEIRFM+E DGSAK IVFSQFTSFLDLI YSL KS + CVQL GSMS+ ARD+AI FTEDPDC+ Sbjct: 1 MKLRSRPSSSSAKGKQRRQYQDSSDE-DYLLSMSSDSD---YIGSSDEDVADE-VVNLTEEVVYSNRRKRNRGKKKIETKEDHGEEEENVDWVMNEVGGGGEVDAGYLQLIGRIEDRKKIRVKNQKKRPTLLWEIWEEENDSWMAENYPNDPHFNSQDELVTETAQPPSDLIMPLLRYQKEWLTWALKQEESTARGGILADEMGMGKTVQAIALVLAKREIGQAISGSSLLSPAPCTSQQLPVMKGSLVICPVVAVIQWVSEIDRFTTKGSNKILVYHGTNRVKNIDKFAEYDFVITTYSTVEAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQKYFCGPDAVKTAKQSKQQSKPGGKPSKLKKDHIEGDSKINTGKRGSGKGIKRKSEADAGCVDDLAFAGQ--DMSTRKSILHSVKWNRIILDEAHYVKDRRSNTTRAILALESSYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYFCKDCDCRVLDYSSS-ECPHCPHKSIRHFCWWNRYIASPIQNQGNRGTGRDAMVLLKHKILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARRGS--TNDAGSVEQLCGLCHDPVEDPVVTSCTHIFCKSCLIDFSASVGQVSCPSCSEPLTVDFTANDKGDQKSKATIKGFRSSSILNRIHLDNFQTSTKIEALREEIRFMIEIDGSAKAIVFSQFTSFLDLIHYSLQKSGVSCVQLDGSMSMTARDSAITRFTEDPDCR 789
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: V7BY35_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G115700g PE=4 SV=1) HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0 Identity = 458/670 (68.36%), Postives = 536/670 (80.00%), Query Frame = 3 Query: 483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489 L+W WE+E EKWID+++ DVDLD Q+ V+ ET++A SDL +PLLRYQ+EWLAWALKQE S ++GGILADEMGMGKTIQAIALVLAKR+ I EP+ Q+ S+ L I+ TLVICPVVAV+QWVSEIDRFT +GSTKVLVYHGANRG++ +F++YDFVITTYS+VE EYRK MMPPKE+CPYCGK F KL H Y+CGPDA++TE QSKQ +KK + K+ S + K + ED D + KS LH+VKW+RIILDEAH++K R CNTAKAVL+L+S YKWALSGTPLQNRVGELYSL+RFLQI PYSYYLCKDCDC+ LD+SS +C C H+SVRHFCWWNKYVATPIQ +GNG+ GKRAMILLKHK+LKNIVLRRTK GRAADLALPPRI+SLR+D +DIKE DYYESLY+ESQAQFNTY++A T+M+NYAHIFDLLTRLRQAVDHPYLVVYS +++ R+ + N + EQ+CGIC++P ED VVT+C H FC+ACLID +S SLG VSCP+CS+LLTVDLT N D G +KTT+KGF+SSSILNRI L +FQTSTK EALREEIRFMVERDGSAKGIVFSQFTSFLDLI YSLHKS + CVQL GSMSL ARDAAI+ FTEDPDCK Sbjct: 176 LLWNAWEEEQEKWIDQHILEDVDLDNQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSLSRGGILADEMGMGKTIQAIALVLAKRE-FQDICEPD---QSIPCSSSLSAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQNYFCGPDAVRTEKQSKQAKKKREVTKGKTKECDSRKILKGSIKEKGDKMGIDMEDSDAVP------------VRSDKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSK-ECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSSSRSAVMAN-NATTVEQICGICHEPIEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTPNKDVGDQAKTTIKGFRSSSILNRIHLENFQTSTKTEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLTARDAAIRRFTEDPDCK 827
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: G7JEP7_MEDTR (RING/U-box helicase OS=Medicago truncatula GN=MTR_4g049500 PE=4 SV=1) HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0 Identity = 467/673 (69.39%), Postives = 527/673 (78.31%), Query Frame = 3 Query: 483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEG--KSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQR-AGNIV-NGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489 L+W W+QEHEKWID+NL DV LDQ + V+ ET++ASSDLI+PLLRYQ+EWLAWALKQE+S T+GGILADEMGMGKTIQAIALVL+KR++ EP S + GSS LP I+ TLVICPVVAV+QWVSEI RFT +GSTKVLVYHG R K+ +FSEYDFVITTYS VE+EYRK +MPPKEKC YCG+ FH L H KYYCGPDAI+T Q+KQ +KK + + KE +L EG KS LH+VKW+RIILDEAHF+K R NTAKAVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY LCKDCDC+TLD+SSS C C H+SVRHFCWWNK +ATPIQ G G+ GKRAMILLK+K+LK+IVLRRTK GRAADLALPPRI+SLRRD++DIKE DYYESLY+ESQAQFNTYV+ T+ NNYAHIFDLLTRLRQAVDHPYLVVYS TAA R GN+ NGD EQ CGIC+D EDPVVT+C H FCK CLIDFSASLG +SCPSCS+LLTVDLT+N D TT+KGF+SSSILNRIQ+ +FQTSTKIEALREEIRFMVERDGSAK IVFSQFTSFLDLI YSL KS + CVQLVGSM+L ARD AIK FT+DPDCK Sbjct: 196 LLWHAWKQEHEKWIDQNLLEDVTLDQ-SEVMNETAEASSDLIVPLLRYQREWLAWALKQEESVTRGGILADEMGMGKTIQAIALVLSKRELQQMCCEPFEHSDSPGSSKVLPVIKGTLVICPVVAVTQWVSEIARFTLKGSTKVLVYHGPKRWKSADKFSEYDFVITTYSTVESEYRKHVMPPKEKCQYCGRLFHPPSLVFHQKYYCGPDAIRTTKQAKQTKKKKRGQSSKLDGELEQ----------------------------GSIKKKEEDL-EGNDKSFLHAVKWQRIILDEAHFIKSRHSNTAKAVLALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYNLCKDCDCRTLDHSSSKVCSNCSHSSVRHFCWWNKNIATPIQSSGYGDDGKRAMILLKNKLLKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAARQGGNLASNGDV---EQECGICHDTVEDPVVTSCEHTFCKGCLIDFSASLGQISCPSCSKLLTVDLTSNKDAVVDKTTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLTARDNAIKKFTDDPDCK 835
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: K4D0D1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g049740.1 PE=4 SV=1) HSP 1 Score: 920.613 bits (2378), Expect = 0.000e+0 Identity = 444/669 (66.37%), Postives = 526/669 (78.62%), Query Frame = 3 Query: 483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489 L+WE+WE+E++ W+ EN D DL+ Q+ ++TET+ SD I+PLLRYQKEWLAWALKQE+SN +GGILADEMGMGKT QAIALVLA+R++ I + ++ S SS +L ++ TLVICPVVAV QWVSEIDRFT++GS KVLVYHGANR KN+ +F+EY+FVITTYS VEAEYRK ++PPKEKC +CGKSF+++KL H KYYCGP A+KT+ QSKQ+ K K + K K D D + SA ++ KS+LH VKW RIILDEAH+VKDRR NT KA+L+LES YKWALSGTPLQNRVGELYSLVRFLQI+PYSYY CKDCDC+ LDYSSS CP CPH VRHFCWWN+Y+A+PIQ GN GK AM+LLKHKILK+I+LRRTKKGRAADLALPPRI++LR+D++D+KE DYY SLY+ESQAQFN Y+QAGT+MNNYAHIFDLLTRLRQAVDHPYLVVYSS A R + D EQ CG+C+DP EDPVVT+C HVFCK+CLIDFSAS+G VSCPSC++ LTV+ T N G SK T+KGF+SSSILNRI L++FQTSTKIEALREEIRFM+ERDGSAK IVFSQFTSFLDLI Y+L KS + CVQL GSMS+ ARD+AI FTEDPDC+ Sbjct: 126 LLWEIWEEENDSWMAENYPNDPDLNIQDELVTETAQPPSDFIMPLLRYQKEWLAWALKQEESNARGGILADEMGMGKTAQAIALVLARRELAQAISDSSLLSSAPCSSQELLAVKGTLVICPVVAVIQWVSEIDRFTAKGSNKVLVYHGANREKNIDKFAEYEFVITTYSTVEAEYRKNVLPPKEKCQWCGKSFYEQKLPFHQKYYCGPHAVKTDKQSKQQSNPGGKPSKLKKNPIEG--DSEIDTGKGGRGKGIKRKSDTDAGSVDDSACASQDMSPRKSVLHCVKWNRIILDEAHYVKDRRSNTTKAILALESSYKWALSGTPLQNRVGELYSLVRFLQILPYSYYFCKDCDCRVLDYSSS-DCPHCPHKPVRHFCWWNRYIASPIQSQGNYGTGKDAMVLLKHKILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNIYIQAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSVALARRES--TNDAGSVEQPCGLCHDPVEDPVVTSCTHVFCKSCLIDFSASVGQVSCPSCAKTLTVEFTANDKGDHKSKATIKGFRSSSILNRIHLDNFQTSTKIEALREEIRFMIERDGSAKAIVFSQFTSFLDLIHYALQKSGVGCVQLDGSMSMTARDSAITRFTEDPDCR 789
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2) HSP 1 Score: 354.755 bits (909), Expect = 8.772e-107 Identity = 181/391 (46.29%), Postives = 260/391 (66.50%), Query Frame = 3 Query: 1320 KSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLD--YSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLG---NVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTED 2477 KSLLH +++ RIILDEAH +K R CNTA+AV L + K LSGTPLQNR+GEL+SL+RFL+ P++YY C C+CK+L +S + C +C H + H C++N + PIQ +G GK A + H +LK+I+LRRTK RA DL LPPR++ +R+D + +E D Y+SLY +S+ +FNTY+ G V+NNYA+IF L+TR+RQ DHP LV+ S ++ +I N + VC IC++ A+D + + C H FC+ C+ ++ + G NV+CPSC L++DL+ A S + FK++SILNRI +N +++STKIEAL EE+ + ++D + K IVFSQFTS LDLI + L K+ CV+L G M+ AR A I++F+ D Sbjct: 379 KSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKV-HSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASK---RKTVDI----ENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEK----FKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSND 757 HSP 2 Score: 108.997 bits (271), Expect = 4.891e-23 Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 3 Query: 600 DLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRK 1016 +L++ LL +Q+E + W +QEDS+ GGILADEMGMGKTIQ IAL+L++ PR + TLV+ PVVA+ QW EID T++ + L Y+G R + ++ S YD V+T+Y+++E+ YRK Sbjct: 250 ELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLSE-----------------------PRGKPTLVVAPVVAIMQWKEEIDTHTNKALSTYL-YYGQARDISGEELSSYDVVLTSYNVIESVYRK 364
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD16_YEAST (DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 1.934e-95 Identity = 167/405 (41.23%), Postives = 256/405 (63.21%), Query Frame = 3 Query: 1296 KEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLD--YSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASL----GNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLN-DFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489 +++ L + S+LH++ + R+ILDEAH +KDR+ NTA+AV +L++ +W LSGTPLQNR+GE+YSL+RFL I P++ Y C CDC + D ++ C C H ++H ++N ++ IQ +G G + ++ +LKNI+LRRTK RA DL LPPRI+++RRD + +E D Y SLY++S+ ++N++V+ G V+NNYA+IF L+TR+RQ DHP LV+ +R N D +C +CND AE+P+ + C H FC+ C+ ++ S ++CP C L++DL+ A + L FK SI++R+ ++ +Q+STKIEAL EE+ + + K IVFSQFTS LDL+++ L ++ + V+L GSMS RD IK F + C+ Sbjct: 300 RKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQ-TLLKNIMLRRTKVERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLVL------KRLNNFPGDDIG--VVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQPA-----LEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCE 690 HSP 2 Score: 107.071 bits (266), Expect = 1.951e-22 Identity = 60/159 (37.74%), Postives = 88/159 (55.35%), Query Frame = 3 Query: 540 VDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRK 1016 V DL + + S + I LL +Q E L W + QE+S GG+LADEMGMGKTIQ IAL++ DL + +LV+ P VA+ QW +EI++ T +G K+ +YHGA+R ++K YD V+TTY+++E+ +RK Sbjct: 159 VFTDLKNAPPYVPQRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALLM----------------------NDLTK-SPSLVVAPTVALMQWKNEIEQHT-KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESVFRK 293
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.734e-51 Identity = 124/417 (29.74%), Postives = 200/417 (47.96%), Query Frame = 3 Query: 1317 GKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAG---------------------------NIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTE 2474 S+ H + W RI+LDEAH +K + AKA L S +W L+GTPLQN++ +LYSL+ FL + P+ ++ WW+K + P Y NG+ R + L+K IL+ ++LRRTK+ R + L LPP + + E D+Y +L+ S+ QF+ +V G V++NYA+I +LL RLRQ +HP+LV+ + + Q A ++ R+ + + C IC + A+DPV+T CAH C+ CL+ S CP C +L +T L + SI + +++ S+K+ L + + + + K IVFSQ+TSFLDL++ L + + ++ G ++ R+ +K F E Sbjct: 807 ANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWC-----------------------------NWAWWSKLIQKP---YENGD--PRGLKLIK-AILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTIL-------------KRTELISCPTDSIFRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNE 1175 HSP 2 Score: 79.7221 bits (195), Expect = 8.062e-14 Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3 Query: 675 KGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRC----------TLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFM 1022 +GGILAD MG+GKT+ IAL+LA+ + E + + + I TL+ICP+ +SQW E++ + + VLVY+G +R + K + +D V+TTY ++ + Y++ M Sbjct: 681 RGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQDM 806
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 6.849e-50 Identity = 130/418 (31.10%), Postives = 203/418 (48.56%), Query Frame = 3 Query: 1329 LHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK-----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVV-------YS-------------STAAQRAGN----------IVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTED 2477 +++V+W RI+LDEAH +K+ + + A +L + +W L+GTP+QN + +LYSL+RFL+I P+ + WWNK V P + G + L ILK I+LRRTK +GR L LPP + + E D+Y++L+ S+ +F+ +V+ G V++NYA I +LL RLRQ DHP+LV+ YS S+ +R G +V R ++ C IC + ED V+T CAH C+ CL+ + + CP C + SK L + S ++ S+KI AL EE+ + R +K I+FSQ+T+FLDL++ L +++ V+L G++S R+ +K F+ED Sbjct: 562 IYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTW-----------------------------AWWNKLVQKPFEE------GDERGLKLVQSILKPIMLRRTKSSTDREGRPI-LVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTV-------------SKQELITAPTESRFQVDVEKNWVESSKITALLEELEGL--RSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSED 928 HSP 2 Score: 75.485 bits (184), Expect = 1.372e-12 Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 3 Query: 675 KGGILADEMGMGKTIQAIALVLAKRQVLHTIGE--PNVSSQTAGSST--DL--PRIRCT---------------------LVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEY 1010 +GGILAD MG+GKT+ I+L+LA + G PN SS+ DL P ++ T L++CP+ + QW +EI+ GS V V++G +R K+ K S+ D VITTY ++ +E+ Sbjct: 413 RGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEF 551
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: HLTF_HUMAN (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2) HSP 1 Score: 177.178 bits (448), Expect = 2.186e-44 Identity = 124/405 (30.62%), Postives = 196/405 (48.40%), Query Frame = 3 Query: 1314 EGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGN---------------IVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468 +G S LHS++W R+ILDE H +++ KAVL LES +W L+GTP+QN + +L+SL+ FL++ P+ +D WW++ + P+ G G R + ++KNI LRRTK KG+ L LP R + ++ T+ +E Y+S+ +E +A Y GTV+ +YA + LL RLRQ H YL+ + ++ +GN ++ +D+E C IC D PV+T CAHVFCK C+ + CP C + D + ++ + K KS ++ +S+KI AL + + +++ + K +V SQFT+FL LI+ L S +L GSM+ R +I+ F Sbjct: 541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPF------------IDRE-----------------WWHRTIQRPVTMGDEG--GLRRL----QSLIKNITLRRTKTSKIKGKPV-LELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEE--CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEK--KSDM--------EWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCF 897
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.813e-43 Identity = 130/437 (29.75%), Postives = 206/437 (47.14%), Query Frame = 3 Query: 1329 LHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV-------------------------------VYSSTA----AQRAGNIVNGD------RNDDEQVCGIC-NDPAEDPVVTACAHVFCKACLIDF-SASLGNVSCPSC--------SRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTE 2474 L S+++ RII+DEAH +K+R T+KA + + ++WAL+GTP+ N++ +L+SLVRFL + P++ +F +W ++ P + +G+ RA+ +++ +L+ +VLRRTK + D + LPP+ I + + E D Y ++++++ F+ V+AGTVM + IF + RLRQ+ HP LV + S TA A + N G R++ E C +C +P D VT C H CK CL+D+ P C R L + + D SK K L R+ +N +S K+ AL E+R + K +VFSQFTSFL LI+ +L +++IK ++L GSM+ AR A + FTE Sbjct: 656 LFSLRFFRIIIDEAHHIKNRSSKTSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWN-----------------------------NFSFWRTFITVP---FESGDF-MRALDVVQ-TVLEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVNVELSETERDVYNYIFNKAKRTFSQNVEAGTVMKAFTTIFAQILRLRQSCCHPILVRNRDIVADEVEAGAAADAAAGLADDMDLESLITSFTAVTDKASKESNQTFGAHALEQIRDEAENECPLCFEEPMNDQTVTGCWHSACKKCLLDYIKHQTDKAEVPRCFSCREPINKRDLFEVVRHDDDSDMMSK------KPRISLQRVGVN--ASSAKVVALMSELRALRREHPKMKSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTE 1050 HSP 2 Score: 74.3294 bits (181), Expect = 3.227e-12 Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 3 Query: 477 QPLMWEVWEQEHEKW----IDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALV--------LAKRQVLHTIGEPNVSSQTAGSSTDLPRIRC-TLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQF-------SEYDFVITTYSIVEAEY 1010 +PLM +WEQ +W +DEN ++ + V + D S D + ++ + GGILADEMG+GKTIQ ++LV L RQ + N ++ +S + C TLV+ P+ +SQW SE ++ + G+ K +Y+G + N++ + D VIT+Y +V +E+ Sbjct: 461 EPLMHPLWEQY--EWPLKDVDENDLPQIEGQSKFYVNPYSGDLSLDFPV----------------QEQHCLGGILADEMGLGKTIQMLSLVHTHRSEVALEARQSVVARSNVNQLTRLGKNSESILDAPCTTLVVAPMSLLSQWQSEAEKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPDLVITSYGVVLSEF 640
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 4.157e-43 Identity = 126/402 (31.34%), Postives = 192/402 (47.76%), Query Frame = 3 Query: 1323 SLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVV--YSSTAAQRAGN-------------IVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468 S LHS+KW R+ILDE H +++ KAVL LE+ +W L+GTP+QN + +L+SL+ FL++ P+ +D WW + + P+ G G R + ++KNI LRRTK KG+ L LP R + ++ T+ +E Y+S+ +E +A Y GTV+ +YA + LL RLRQ H +L+ SS+ R+ I+ +D+E C IC D PV+T CAHVFCK C+ + + CP C + D N + K SS+ ++++S+KI AL + + +D + K +V SQFT+FL LI+ L S +L GSM+ R +I+ F Sbjct: 538 SPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPF------------IDRE-----------------WWYRIIQRPVTTGDEG--GLRRL----QSLIKNITLRRTKTSKIKGKPV-LELPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLTNGMSSSGPSRSDTPEELRKMLIEKMKIILSSGSDEE--CAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGD---NLLECPPEELACDSDKESSM-------EWKSSSKINALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRF 891
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: HLTF_RABIT (Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 5.752e-43 Identity = 121/403 (30.02%), Postives = 193/403 (47.89%), Query Frame = 3 Query: 1314 EGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDR-------------NDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468 +G S LHS++W R+ILDE H +++ KAVL LE+ +W L+GTP+QN + +L+SL+ FL++ P+ +D WW++ + P+ G G R + ++KNI LRRTK KG+ L LP R + ++ T+ +E Y+S+ SE +A Y GTV+ +YA + LL RLRQ H +L+ + +++ +GN + + ++ C IC D PV+T CAHVFCK C+ + CP C + D N + K S++ ++ +S+KI AL + + ++ + K +V SQFT+FL LI+ L S +L GSM+ R +I+ F Sbjct: 538 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPF------------VDRE-----------------WWHRTIQRPVTMGDEG--GLRRL----QSLIKNITLRRTKTSKIKGKPV-LELPERPVFIQHITLSDEERKIYQSVKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNTVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGD---NLLECPPEELACDSEKKSNM-------EWTSSSKINALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCF 894
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD5_EMENI (DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 3.968e-40 Identity = 133/457 (29.10%), Postives = 197/457 (43.11%), Query Frame = 3 Query: 1329 LHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYL----VVYSSTAAQRAGNIVNGDRNDDEQV------------------------------------------CGICN-DPAEDPVVTACAHVFCKACLIDFSASLGNVS----CPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSI-------------LNRIQLNDF-------QTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTE 2474 L SV + R+ILDEAH +K+RR TA+A L++ ++W L+GTP+ NR+ +L+SLVRFL++ P++ +F +W ++ P + + E+ + I + +L+ +VLRRTK + + + LP R I + + + +E + Y +Y+ ++ FN+ V AGT++ +Y+ IF L RLRQ HP L + + A + D DD + C IC+ +P DP VTAC H CK CL D+ + C SC L QS TT SSI RI L TS KI AL + +V K +VFSQFTSFLDLI L K+ I V+L G+M+ AR + FT+ Sbjct: 643 LFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRVEPWN-----------------------------NFSFWKTFITAPFE---SKEVVR--AISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPILTRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDIFEVVRYQSPNTTPTEQTPSSIGGDNVYSSSQPPPPPRISLRRINPLSPSAHTSAKIHAL---LAHLVRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEVLAQFTK 1062 HSP 2 Score: 73.1738 bits (178), Expect = 7.106e-12 Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 3 Query: 678 GGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQF------SEYDFVITTYSIVEAEYR 1013 GGILADEMG+GKTI+ ++LV + R + T N++ S +P TLV+ P+ ++QW E + + GS KVL+Y+G + N+++ + + ++T+Y +V +E+R Sbjct: 512 GGILADEMGLGKTIEMLSLVHSHRNLPPTQSLGNLTRLPV--SGVVPAPYTTLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSYGVVMSEHR 627
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNB (DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 3.922e-38 Identity = 122/448 (27.23%), Postives = 201/448 (44.87%), Query Frame = 3 Query: 1314 EGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIV------NGDRN-----------------------------------DDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGN----VSCPSCS--------------RLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468 EG SL + ++ RI+LDEAH +++R +KA L+ +WAL+GTP+ NR+ +LYSL+ FL+I P+ Y ++ +V P + + +A+ ++++ IL++ +LRR K R D + LPP+ + ++ E Y+ L ++ +F G M+NY I +L +LRQ VDHP LV+ S G + NG+ N +D +C +C++ D V+ C H C+ C++++ + + SCPSC R V+ T+A G + ++ L ++ D TSTK+ AL ++ + + D AK +VFSQFTSFLDLI+ +L K I+ ++ G+MS A R I+ F Sbjct: 673 EGGSL-YDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNY-----------------------------SFFRSFVTVPFLNQDH-----KALNVVQY-ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVLKELGEQEDTPICELCSNEMFDEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAYPGGRDPNSKSSNDTTVTLGKV---DLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEF 1081 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000197 ID=g.arboreum_cottongen_reftransV1_0000197; Name=g.arboreum_cottongen_reftransV1_0000197; organism=Gossypium arboreum; type=contig; length=2490bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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