g.arboreum_cottongen_reftransV1_0000197, g.arboreum_cottongen_reftransV1_0000197 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000197
Unique Nameg.arboreum_cottongen_reftransV1_0000197
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length2490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0000197:1..2490 .
Chr6:95626..102793 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: A0A068URB3_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_47 OS=Coffea canephora GN=GSCOC_T00031650001 PE=4 SV=1)

HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0
Identity = 454/678 (66.96%), Postives = 546/678 (80.53%), Query Frame = 3
Query:  483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEG--------KSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADG-GQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489
            L+WEV + E E+WI EN   DVDL  QN ++ ET +  ++LIIPLLRYQKEWLAWALKQE+S T+GGILADEMGMGKT QAIALV+AK+++   I EP++ +    SS+  P ++ TLVICP+VAV QWVSEIDRFT++GS KVLVYHG+NRG+N+ QFSEYDFVITTYSIVEAEYR+ +MPPK KC +CGK  ++ K+SVHLKY+CGPDAIKT  QSKQ+RKK  S   + K++    E D+       + +  K+          +     + +P          KS+LHSVKWERIILDEAH++KDRR +T +AV +L+SLYKWALSGTPLQNRVGELYSLVRFL+IVPYSYY CKDCDC++LDYS+ST CP CPH SVRHFCWWN++VA+PI++ GN   G++AM+LLKH+ILK+IVLRRTKKGRAADLALPPRI++LRRD +DIKE DYY SLY+ESQAQFNTY++A T+MNNYAHIFDLLTRLRQAVDHPYLVVYSSTAA R G+I N       +VCG+C++ AED VVT+C HVFCK+CLIDFSAS+G +SCPSC++LLTVD T N +   Q  KTT+KGFK SSI+NRI+L+DFQTSTKI+ALREEIRFMVERDGSAKGIVFSQFTSFLDLI YSL KS + CVQL GSMS+ ARDAAIK FTEDPDC+
Sbjct:  142 LVWEVLQHEIERWIKENEANDVDLSNQNEILAETVEPPANLIIPLLRYQKEWLAWALKQEESTTRGGILADEMGMGKTAQAIALVVAKQEIQKAISEPSLVASAPSSSSTFPAVKGTLVICPLVAVVQWVSEIDRFTTKGSNKVLVYHGSNRGRNIDQFSEYDFVITTYSIVEAEYRRNVMPPKHKCQWCGKLLYEHKMSVHLKYFCGPDAIKTAKQSKQQRKKSNSKTTTSKQNLEFDEDDAFDSNGDMQKRGRKKGAKTSNGIGGSGNAFAYGIPADIGESSSTKKSILHSVKWERIILDEAHYIKDRRSSTTRAVFALQSLYKWALSGTPLQNRVGELYSLVRFLEIVPYSYYYCKDCDCRSLDYSTSTDCPHCPHKSVRHFCWWNRHVASPIKYAGNLGEGRKAMLLLKHRILKSIVLRRTKKGRAADLALPPRIVTLRRDELDIKEEDYYTSLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAGRGGSIRNAPSG---EVCGLCHENAEDAVVTSCTHVFCKSCLIDFSASMGQISCPSCAKLLTVDFTGNKENEDQMPKTTIKGFKPSSIINRIRLDDFQTSTKIDALREEIRFMVERDGSAKGIVFSQFTSFLDLIHYSLQKSGVSCVQLDGSMSMTARDAAIKRFTEDPDCR 816          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: K4C0N1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc05g044480.2 PE=4 SV=1)

HSP 1 Score: 943.725 bits (2438), Expect = 0.000e+0
Identity = 479/799 (59.95%), Postives = 593/799 (74.22%), Query Frame = 3
Query:  132 MQLRSRKRTSNFSTNE--EHSDSSDQADNFIQLDDLSDSETYVRSSDSDLGEEEILDLNHKAVKAAPITISDFT---EPPTNRGNGEQ----ILSE---QNESQFDFNVSXXXXXXXXXXXXXXRSGQP-LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489
            M+LRSR  +S+    +  ++ DSSD+ D  + +   SD   Y+ SSD D+ +E +++L  + V +     +      E   + G  E+    +++E     E    +     +  +  K + K +  +P L+WE+WE+E++ W+ EN   D   + Q+ ++TET+   SDLI+PLLRYQKEWL WALKQE+S  +GGILADEMGMGKT+QAIALVLAKR++   I   ++ S    +S  LP ++ +LVICPVVAV QWVSEIDRFT++GS K+LVYHG NR KN+ +F+EYDFVITTYS VEAEYRK +MPPKEKC +CGKSF+++KLSVH KY+CGPDA+KT  QSKQ+ K      K  K H       +  +    K    K + D     D   AG+  ++   KS+LHSVKW RIILDEAH+VKDRR NT +A+L+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSYY CKDCDC+ LDYSSS +CP CPH S+RHFCWWN+Y+A+PIQ+ GN   G+ AM+LLKHKILK+I+LRRTKKGRAADLALPPRI++LR+D++D+KE DYY SLY+ESQAQFNTY+QAGT+MNNYAHIFDLLTRLRQAVDHPYLVVYSSTA  R G+    D    EQ+CG+C+DP EDPVVT+C H+FCK+CLIDFSAS+G VSCPSCS  LTVD T N  G Q SK T+KGF+SSSILNRI L++FQTSTKIEALREEIRFM+E DGSAK IVFSQFTSFLDLI YSL KS + CVQL GSMS+ ARD+AI  FTEDPDC+
Sbjct:    1 MKLRSRPSSSSAKGKQRRQYQDSSDE-DYLLSMSSDSD---YIGSSDEDVADE-VVNLTEEVVYSNRRKRNRGKKKIETKEDHGEEEENVDWVMNEVGGGGEVDAGYLQLIGRIEDRKKIRVKNQKKRPTLLWEIWEEENDSWMAENYPNDPHFNSQDELVTETAQPPSDLIMPLLRYQKEWLTWALKQEESTARGGILADEMGMGKTVQAIALVLAKREIGQAISGSSLLSPAPCTSQQLPVMKGSLVICPVVAVIQWVSEIDRFTTKGSNKILVYHGTNRVKNIDKFAEYDFVITTYSTVEAEYRKNVMPPKEKCQWCGKSFYEQKLSVHQKYFCGPDAVKTAKQSKQQSKPGGKPSKLKKDHIEGDSKINTGKRGSGKGIKRKSEADAGCVDDLAFAGQ--DMSTRKSILHSVKWNRIILDEAHYVKDRRSNTTRAILALESSYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYFCKDCDCRVLDYSSS-ECPHCPHKSIRHFCWWNRYIASPIQNQGNRGTGRDAMVLLKHKILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNTYIQAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSTALARRGS--TNDAGSVEQLCGLCHDPVEDPVVTSCTHIFCKSCLIDFSASVGQVSCPSCSEPLTVDFTANDKGDQKSKATIKGFRSSSILNRIHLDNFQTSTKIEALREEIRFMIEIDGSAKAIVFSQFTSFLDLIHYSLQKSGVSCVQLDGSMSMTARDSAITRFTEDPDCR 789          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: V7BY35_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G115700g PE=4 SV=1)

HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0
Identity = 458/670 (68.36%), Postives = 536/670 (80.00%), Query Frame = 3
Query:  483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489
            L+W  WE+E EKWID+++  DVDLD Q+ V+ ET++A SDL +PLLRYQ+EWLAWALKQE S ++GGILADEMGMGKTIQAIALVLAKR+    I EP+   Q+   S+ L  I+ TLVICPVVAV+QWVSEIDRFT +GSTKVLVYHGANRG++  +F++YDFVITTYS+VE EYRK MMPPKE+CPYCGK F   KL  H  Y+CGPDA++TE QSKQ +KK +      K+  S        +    K   + ED D               +   KS LH+VKW+RIILDEAH++K R CNTAKAVL+L+S YKWALSGTPLQNRVGELYSL+RFLQI PYSYYLCKDCDC+ LD+SS  +C  C H+SVRHFCWWNKYVATPIQ +GNG+ GKRAMILLKHK+LKNIVLRRTK GRAADLALPPRI+SLR+D +DIKE DYYESLY+ESQAQFNTY++A T+M+NYAHIFDLLTRLRQAVDHPYLVVYS +++ R+  + N +    EQ+CGIC++P ED VVT+C H FC+ACLID +S SLG VSCP+CS+LLTVDLT N D G  +KTT+KGF+SSSILNRI L +FQTSTK EALREEIRFMVERDGSAKGIVFSQFTSFLDLI YSLHKS + CVQL GSMSL ARDAAI+ FTEDPDCK
Sbjct:  176 LLWNAWEEEQEKWIDQHILEDVDLDNQSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSLSRGGILADEMGMGKTIQAIALVLAKRE-FQDICEPD---QSIPCSSSLSAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQNYFCGPDAVRTEKQSKQAKKKREVTKGKTKECDSRKILKGSIKEKGDKMGIDMEDSDAVP------------VRSDKSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSK-ECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSSSRSAVMAN-NATTVEQICGICHEPIEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTPNKDVGDQAKTTIKGFRSSSILNRIHLENFQTSTKTEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLTARDAAIRRFTEDPDCK 827          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: G7JEP7_MEDTR (RING/U-box helicase OS=Medicago truncatula GN=MTR_4g049500 PE=4 SV=1)

HSP 1 Score: 926.391 bits (2393), Expect = 0.000e+0
Identity = 467/673 (69.39%), Postives = 527/673 (78.31%), Query Frame = 3
Query:  483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEG--KSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQR-AGNIV-NGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489
            L+W  W+QEHEKWID+NL  DV LDQ + V+ ET++ASSDLI+PLLRYQ+EWLAWALKQE+S T+GGILADEMGMGKTIQAIALVL+KR++     EP   S + GSS  LP I+ TLVICPVVAV+QWVSEI RFT +GSTKVLVYHG  R K+  +FSEYDFVITTYS VE+EYRK +MPPKEKC YCG+ FH   L  H KYYCGPDAI+T  Q+KQ +KK +                                         +   KE +L EG  KS LH+VKW+RIILDEAHF+K R  NTAKAVL+LES YKWALSGTPLQNRVGELYSLVRFLQIVPYSY LCKDCDC+TLD+SSS  C  C H+SVRHFCWWNK +ATPIQ  G G+ GKRAMILLK+K+LK+IVLRRTK GRAADLALPPRI+SLRRD++DIKE DYYESLY+ESQAQFNTYV+  T+ NNYAHIFDLLTRLRQAVDHPYLVVYS TAA R  GN+  NGD    EQ CGIC+D  EDPVVT+C H FCK CLIDFSASLG +SCPSCS+LLTVDLT+N D      TT+KGF+SSSILNRIQ+ +FQTSTKIEALREEIRFMVERDGSAK IVFSQFTSFLDLI YSL KS + CVQLVGSM+L ARD AIK FT+DPDCK
Sbjct:  196 LLWHAWKQEHEKWIDQNLLEDVTLDQ-SEVMNETAEASSDLIVPLLRYQREWLAWALKQEESVTRGGILADEMGMGKTIQAIALVLSKRELQQMCCEPFEHSDSPGSSKVLPVIKGTLVICPVVAVTQWVSEIARFTLKGSTKVLVYHGPKRWKSADKFSEYDFVITTYSTVESEYRKHVMPPKEKCQYCGRLFHPPSLVFHQKYYCGPDAIRTTKQAKQTKKKKRGQSSKLDGELEQ----------------------------GSIKKKEEDL-EGNDKSFLHAVKWQRIILDEAHFIKSRHSNTAKAVLALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYNLCKDCDCRTLDHSSSKVCSNCSHSSVRHFCWWNKNIATPIQSSGYGDDGKRAMILLKNKLLKSIVLRRTKIGRAADLALPPRIVSLRRDSLDIKEQDYYESLYNESQAQFNTYVEENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAARQGGNLASNGDV---EQECGICHDTVEDPVVTSCEHTFCKGCLIDFSASLGQISCPSCSKLLTVDLTSNKDAVVDKTTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLTARDNAIKKFTDDPDCK 835          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Match: K4D0D1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc10g049740.1 PE=4 SV=1)

HSP 1 Score: 920.613 bits (2378), Expect = 0.000e+0
Identity = 444/669 (66.37%), Postives = 526/669 (78.62%), Query Frame = 3
Query:  483 LMWEVWEQEHEKWIDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFMMPPKEKCPYCGKSFHQKKLSVHLKYYCGPDAIKTENQSKQERXXXXXXXXXXXXHASNYXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAGKEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489
            L+WE+WE+E++ W+ EN   D DL+ Q+ ++TET+   SD I+PLLRYQKEWLAWALKQE+SN +GGILADEMGMGKT QAIALVLA+R++   I + ++ S    SS +L  ++ TLVICPVVAV QWVSEIDRFT++GS KVLVYHGANR KN+ +F+EY+FVITTYS VEAEYRK ++PPKEKC +CGKSF+++KL  H KYYCGP A+KT+ QSKQ+        K  K                 + K  K   D D    + SA    ++   KS+LH VKW RIILDEAH+VKDRR NT KA+L+LES YKWALSGTPLQNRVGELYSLVRFLQI+PYSYY CKDCDC+ LDYSSS  CP CPH  VRHFCWWN+Y+A+PIQ  GN   GK AM+LLKHKILK+I+LRRTKKGRAADLALPPRI++LR+D++D+KE DYY SLY+ESQAQFN Y+QAGT+MNNYAHIFDLLTRLRQAVDHPYLVVYSS A  R  +    D    EQ CG+C+DP EDPVVT+C HVFCK+CLIDFSAS+G VSCPSC++ LTV+ T N  G   SK T+KGF+SSSILNRI L++FQTSTKIEALREEIRFM+ERDGSAK IVFSQFTSFLDLI Y+L KS + CVQL GSMS+ ARD+AI  FTEDPDC+
Sbjct:  126 LLWEIWEEENDSWMAENYPNDPDLNIQDELVTETAQPPSDFIMPLLRYQKEWLAWALKQEESNARGGILADEMGMGKTAQAIALVLARRELAQAISDSSLLSSAPCSSQELLAVKGTLVICPVVAVIQWVSEIDRFTAKGSNKVLVYHGANREKNIDKFAEYEFVITTYSTVEAEYRKNVLPPKEKCQWCGKSFYEQKLPFHQKYYCGPHAVKTDKQSKQQSNPGGKPSKLKKNPIEG--DSEIDTGKGGRGKGIKRKSDTDAGSVDDSACASQDMSPRKSVLHCVKWNRIILDEAHYVKDRRSNTTKAILALESSYKWALSGTPLQNRVGELYSLVRFLQILPYSYYFCKDCDCRVLDYSSS-DCPHCPHKPVRHFCWWNRYIASPIQSQGNYGTGKDAMVLLKHKILKSILLRRTKKGRAADLALPPRIVTLRKDSLDVKEEDYYTSLYNESQAQFNIYIQAGTLMNNYAHIFDLLTRLRQAVDHPYLVVYSSVALARRES--TNDAGSVEQPCGLCHDPVEDPVVTSCTHVFCKSCLIDFSASVGQVSCPSCAKTLTVEFTANDKGDHKSKATIKGFRSSSILNRIHLDNFQTSTKIEALREEIRFMIERDGSAKAIVFSQFTSFLDLIHYALQKSGVGCVQLDGSMSMTARDSAITRFTEDPDCR 789          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RHP16_SCHPO (ATP-dependent helicase rhp16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp16 PE=3 SV=2)

HSP 1 Score: 354.755 bits (909), Expect = 8.772e-107
Identity = 181/391 (46.29%), Postives = 260/391 (66.50%), Query Frame = 3
Query: 1320 KSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLD--YSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLG---NVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTED 2477
            KSLLH +++ RIILDEAH +K R CNTA+AV  L +  K  LSGTPLQNR+GEL+SL+RFL+  P++YY C  C+CK+L   +S  + C +C H  + H C++N  +  PIQ +G    GK A   + H +LK+I+LRRTK  RA DL LPPR++ +R+D  + +E D Y+SLY +S+ +FNTY+  G V+NNYA+IF L+TR+RQ  DHP LV+ S    ++  +I     N +  VC IC++ A+D + + C H FC+ C+ ++  + G   NV+CPSC   L++DL+  A    S +     FK++SILNRI +N +++STKIEAL EE+  + ++D + K IVFSQFTS LDLI + L K+   CV+L G M+  AR A I++F+ D
Sbjct:  379 KSLLHQMEFYRIILDEAHGIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKSLHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKV-HSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASK---RKTVDI----ENQENIVCKICDEVAQDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEK----FKNASILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSND 757          

HSP 2 Score: 108.997 bits (271), Expect = 4.891e-23
Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 3
Query:  600 DLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRK 1016
            +L++ LL +Q+E + W  +QEDS+  GGILADEMGMGKTIQ IAL+L++                       PR + TLV+ PVVA+ QW  EID  T++  +  L Y+G  R  + ++ S YD V+T+Y+++E+ YRK
Sbjct:  250 ELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMGKTIQTIALLLSE-----------------------PRGKPTLVVAPVVAIMQWKEEIDTHTNKALSTYL-YYGQARDISGEELSSYDVVLTSYNVIESVYRK 364          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD16_YEAST (DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.934e-95
Identity = 167/405 (41.23%), Postives = 256/405 (63.21%), Query Frame = 3
Query: 1296 KEHNLPEGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLD--YSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASL----GNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLN-DFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTEDPDCK 2489
            +++ L +  S+LH++ + R+ILDEAH +KDR+ NTA+AV +L++  +W LSGTPLQNR+GE+YSL+RFL I P++ Y C  CDC + D  ++    C  C H  ++H  ++N ++   IQ +G    G  +   ++  +LKNI+LRRTK  RA DL LPPRI+++RRD  + +E D Y SLY++S+ ++N++V+ G V+NNYA+IF L+TR+RQ  DHP LV+      +R  N    D      +C +CND AE+P+ + C H FC+ C+ ++  S       ++CP C   L++DL+  A      +  L  FK  SI++R+ ++  +Q+STKIEAL EE+  +     + K IVFSQFTS LDL+++ L ++  + V+L GSMS   RD  IK F  +  C+
Sbjct:  300 RKNGLFKQPSVLHNIDFYRVILDEAHNIKDRQSNTARAVNNLKTQKRWCLSGTPLQNRIGEMYSLIRFLNINPFTKYFCTKCDCASKDWKFTDRMHCDHCSHVIMQHTNFFNHFMLKNIQKFGVEGPGLESFNNIQ-TLLKNIMLRRTKVERADDLGLPPRIVTVRRDFFNEEEKDLYRSLYTDSKRKYNSFVEEGVVLNNYANIFTLITRMRQLADHPDLVL------KRLNNFPGDDIG--VVICQLCNDEAEEPIESKCHHKFCRLCIKEYVESFMENNNKLTCPVCHIGLSIDLSQPA-----LEVDLDSFKKQSIVSRLNMSGKWQSSTKIEALVEELYKLRSNKRTIKSIVFSQFTSMLDLVEWRLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCE 690          

HSP 2 Score: 107.071 bits (266), Expect = 1.951e-22
Identity = 60/159 (37.74%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  540 VDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRK 1016
            V  DL      + + S     + I LL +Q E L W + QE+S   GG+LADEMGMGKTIQ IAL++                       DL +   +LV+ P VA+ QW +EI++ T +G  K+ +YHGA+R  ++K    YD V+TTY+++E+ +RK
Sbjct:  159 VFTDLKNAPPYVPQRSKQPDGMTIKLLPFQLEGLHWLISQEESIYAGGVLADEMGMGKTIQTIALLM----------------------NDLTK-SPSLVVAPTVALMQWKNEIEQHT-KGQLKIYIYHGASRTTDIKDLQGYDVVLTTYAVLESVFRK 293          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: SM3L3_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.734e-51
Identity = 124/417 (29.74%), Postives = 200/417 (47.96%), Query Frame = 3
Query: 1317 GKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAG---------------------------NIVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTE 2474
              S+ H + W RI+LDEAH +K  +   AKA   L S  +W L+GTPLQN++ +LYSL+ FL + P+                              ++ WW+K +  P   Y NG+   R + L+K  IL+ ++LRRTK+ R  +    L LPP  + +        E D+Y +L+  S+ QF+ +V  G V++NYA+I +LL RLRQ  +HP+LV+  + + Q A                             ++   R+ + + C IC + A+DPV+T CAH  C+ CL+    S     CP C  +L              +T L    + SI     + +++ S+K+  L + +  + +     K IVFSQ+TSFLDL++  L +   + ++  G ++   R+  +K F E
Sbjct:  807 ANSIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWC-----------------------------NWAWWSKLIQKP---YENGD--PRGLKLIK-AILRPLMLRRTKETRDKEGSLILELPPTDVQVIECEQSEAERDFYTALFKRSKVQFDQFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRADSQQYADLDSLARRFLDNNPDSVSQNAPSRAYIEEVIQDLRDGNSKECPICLESADDPVLTPCAHRMCRECLLTSWRSPSCGLCPICRTIL-------------KRTELISCPTDSIFRVDVVKNWKESSKVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNE 1175          

HSP 2 Score: 79.7221 bits (195), Expect = 8.062e-14
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  675 KGGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRC----------TLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEYRKFM 1022
            +GGILAD MG+GKT+  IAL+LA+    +   E  + +       +   I            TL+ICP+  +SQW  E++  +   +  VLVY+G +R  + K  + +D V+TTY ++ + Y++ M
Sbjct:  681 RGGILADAMGLGKTVMTIALILARPGRGNPENEDVLVADVNADKRNRKEIHMALTTVKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYGVLTSAYKQDM 806          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: SM3L2_ARATH (Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.849e-50
Identity = 130/418 (31.10%), Postives = 203/418 (48.56%), Query Frame = 3
Query: 1329 LHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK-----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVV-------YS-------------STAAQRAGN----------IVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTED 2477
            +++V+W RI+LDEAH +K+ +   + A  +L +  +W L+GTP+QN + +LYSL+RFL+I P+  +                              WWNK V  P +       G    + L   ILK I+LRRTK     +GR   L LPP    +    +   E D+Y++L+  S+ +F+ +V+ G V++NYA I +LL RLRQ  DHP+LV+       YS             S+  +R G           +V   R  ++  C IC +  ED V+T CAH  C+ CL+    +  +  CP C   +             SK  L    + S        ++  S+KI AL EE+  +  R   +K I+FSQ+T+FLDL++  L +++   V+L G++S   R+  +K F+ED
Sbjct:  562 IYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTW-----------------------------AWWNKLVQKPFEE------GDERGLKLVQSILKPIMLRRTKSSTDREGRPI-LVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRNTV-------------SKQELITAPTESRFQVDVEKNWVESSKITALLEELEGL--RSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSED 928          

HSP 2 Score: 75.485 bits (184), Expect = 1.372e-12
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  675 KGGILADEMGMGKTIQAIALVLAKRQVLHTIGE--PNVSSQTAGSST--DL--PRIRCT---------------------LVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQFSEYDFVITTYSIVEAEY 1010
            +GGILAD MG+GKT+  I+L+LA      + G   PN       SS+  DL  P ++ T                     L++CP+  + QW +EI+     GS  V V++G +R K+ K  S+ D VITTY ++ +E+
Sbjct:  413 RGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEF 551          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: HLTF_HUMAN (Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 2.186e-44
Identity = 124/405 (30.62%), Postives = 196/405 (48.40%), Query Frame = 3
Query: 1314 EGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGN---------------IVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468
            +G S LHS++W R+ILDE H +++      KAVL LES  +W L+GTP+QN + +L+SL+ FL++ P+            +D                   WW++ +  P+     G  G R +      ++KNI LRRTK    KG+   L LP R + ++  T+  +E   Y+S+ +E +A    Y   GTV+ +YA +  LL RLRQ   H YL+  + ++   +GN               ++    +D+E  C IC D    PV+T CAHVFCK C+         +  CP C   +  D        + ++ + K  KS          ++ +S+KI AL   +  + +++ + K +V SQFT+FL LI+  L  S     +L GSM+   R  +I+ F
Sbjct:  541 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPF------------IDRE-----------------WWHRTIQRPVTMGDEG--GLRRL----QSLIKNITLRRTKTSKIKGKPV-LELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEE--CAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDSEK--KSDM--------EWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRLDGSMAQKKRVESIQCF 897          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD5_GIBZE (DNA repair protein RAD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAD5 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.813e-43
Identity = 130/437 (29.75%), Postives = 206/437 (47.14%), Query Frame = 3
Query: 1329 LHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLV-------------------------------VYSSTA----AQRAGNIVNGD------RNDDEQVCGIC-NDPAEDPVVTACAHVFCKACLIDF-SASLGNVSCPSC--------SRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTE 2474
            L S+++ RII+DEAH +K+R   T+KA   + + ++WAL+GTP+ N++ +L+SLVRFL + P++                             +F +W  ++  P   + +G+   RA+ +++  +L+ +VLRRTK  +  D    + LPP+ I +    +   E D Y  ++++++  F+  V+AGTVM  +  IF  + RLRQ+  HP LV                               + S TA    A +  N   G       R++ E  C +C  +P  D  VT C H  CK CL+D+          P C         R L   +  + D    SK      K    L R+ +N   +S K+ AL  E+R +       K +VFSQFTSFL LI+ +L +++IK ++L GSM+  AR A +  FTE
Sbjct:  656 LFSLRFFRIIIDEAHHIKNRSSKTSKACYEISATHRWALTGTPIVNKLEDLFSLVRFLGVEPWN-----------------------------NFSFWRTFITVP---FESGDF-MRALDVVQ-TVLEPLVLRRTKDMKTPDGEPLVLLPPKQIEIVNVELSETERDVYNYIFNKAKRTFSQNVEAGTVMKAFTTIFAQILRLRQSCCHPILVRNRDIVADEVEAGAAADAAAGLADDMDLESLITSFTAVTDKASKESNQTFGAHALEQIRDEAENECPLCFEEPMNDQTVTGCWHSACKKCLLDYIKHQTDKAEVPRCFSCREPINKRDLFEVVRHDDDSDMMSK------KPRISLQRVGVN--ASSAKVVALMSELRALRREHPKMKSVVFSQFTSFLSLIEPALTRANIKFLRLDGSMAQKARAAVLNEFTE 1050          

HSP 2 Score: 74.3294 bits (181), Expect = 3.227e-12
Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 3
Query:  477 QPLMWEVWEQEHEKW----IDENLTVDVDLDQQNAVITETSDASSDLIIPLLRYQKEWLAWALKQEDSNTKGGILADEMGMGKTIQAIALV--------LAKRQVLHTIGEPNVSSQTAGSSTDLPRIRC-TLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQF-------SEYDFVITTYSIVEAEY 1010
            +PLM  +WEQ   +W    +DEN    ++   +  V   + D S D  +                ++ +  GGILADEMG+GKTIQ ++LV        L  RQ +      N  ++   +S  +    C TLV+ P+  +SQW SE ++ +  G+ K  +Y+G  +  N++         +  D VIT+Y +V +E+
Sbjct:  461 EPLMHPLWEQY--EWPLKDVDENDLPQIEGQSKFYVNPYSGDLSLDFPV----------------QEQHCLGGILADEMGLGKTIQMLSLVHTHRSEVALEARQSVVARSNVNQLTRLGKNSESILDAPCTTLVVAPMSLLSQWQSEAEKASKDGTMKTELYYGNEKSSNLQALCCASNAANAPDLVITSYGVVLSEF 640          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: HLTF_MOUSE (Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.157e-43
Identity = 126/402 (31.34%), Postives = 192/402 (47.76%), Query Frame = 3
Query: 1323 SLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVV--YSSTAAQRAGN-------------IVNGDRNDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468
            S LHS+KW R+ILDE H +++      KAVL LE+  +W L+GTP+QN + +L+SL+ FL++ P+            +D                   WW + +  P+     G  G R +      ++KNI LRRTK    KG+   L LP R + ++  T+  +E   Y+S+ +E +A    Y   GTV+ +YA +  LL RLRQ   H +L+    SS+   R+               I+    +D+E  C IC D    PV+T CAHVFCK C+     +   +  CP C   +  D   N       +      K SS+       ++++S+KI AL   +  +  +D + K +V SQFT+FL LI+  L  S     +L GSM+   R  +I+ F
Sbjct:  538 SPLHSIKWLRVILDEGHAIRNPNAQQTKAVLELEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPF------------IDRE-----------------WWYRIIQRPVTTGDEG--GLRRL----QSLIKNITLRRTKTSKIKGKPV-LELPERKVFIQHITLSEEERKIYQSVKNEGKAAIGRYFTEGTVLAHYADVLGLLLRLRQICCHTHLLTNGMSSSGPSRSDTPEELRKMLIEKMKIILSSGSDEE--CAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGD---NLLECPPEELACDSDKESSM-------EWKSSSKINALMHALIELRTKDPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQRF 891          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: HLTF_RABIT (Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.752e-43
Identity = 121/403 (30.02%), Postives = 193/403 (47.89%), Query Frame = 3
Query: 1314 EGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTK----KGRAADLALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIVNGDR-------------NDDEQVCGICNDPAEDPVVTACAHVFCKACLID-FSASLGNVSCPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468
            +G S LHS++W R+ILDE H +++      KAVL LE+  +W L+GTP+QN + +L+SL+ FL++ P+            +D                   WW++ +  P+     G  G R +      ++KNI LRRTK    KG+   L LP R + ++  T+  +E   Y+S+ SE +A    Y   GTV+ +YA +  LL RLRQ   H +L+  + +++  +GN    +              +  ++ C IC D    PV+T CAHVFCK C+         +  CP C   +  D   N       +      K S++       ++ +S+KI AL   +  +  ++ + K +V SQFT+FL LI+  L  S     +L GSM+   R  +I+ F
Sbjct:  538 KGDSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEAERRWVLTGTPIQNSLKDLWSLLSFLKLKPF------------VDRE-----------------WWHRTIQRPVTMGDEG--GLRRL----QSLIKNITLRRTKTSKIKGKPV-LELPERPVFIQHITLSDEERKIYQSVKSEGKATIGRYFNEGTVLAHYADVLGLLLRLRQICCHTHLLTNTVSSSGPSGNDTPEELRKKLIKKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGD---NLLECPPEELACDSEKKSNM-------EWTSSSKINALMHALIDLRTKNPNIKSLVVSQFTTFLSLIETPLKASGFVFTRLDGSMAQKKRVESIQCF 894          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD5_EMENI (DNA repair protein rad5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rad5 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.968e-40
Identity = 133/457 (29.10%), Postives = 197/457 (43.11%), Query Frame = 3
Query: 1329 LHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYL----VVYSSTAAQRAGNIVNGDRNDDEQV------------------------------------------CGICN-DPAEDPVVTACAHVFCKACLIDFSASLGNVS----CPSCSRLLTVDLTTNADGGQSSKTTLKGFKSSSI-------------LNRIQLNDF-------QTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSFTE 2474
            L SV + R+ILDEAH +K+RR  TA+A   L++ ++W L+GTP+ NR+ +L+SLVRFL++ P++                             +F +W  ++  P +   + E+ +   I +   +L+ +VLRRTK  +  +    + LP R I + +  +  +E + Y  +Y+ ++  FN+ V AGT++ +Y+ IF  L RLRQ   HP L     + +      A    + D  DD  +                                          C IC+ +P  DP VTAC H  CK CL D+     +      C SC   L           QS  TT      SSI               RI L           TS KI AL   +  +V      K +VFSQFTSFLDLI   L K+ I  V+L G+M+  AR   +  FT+
Sbjct:  643 LFSVDFFRVILDEAHIIKNRRSKTARACYDLKATHRWVLTGTPIVNRLEDLFSLVRFLRVEPWN-----------------------------NFSFWKTFITAPFE---SKEVVR--AISVVQTVLEPLVLRRTKSMKTPEGEPLVPLPKRTIRIEKVELIEQEREIYNHIYTRAKQTFNSNVAAGTLLKSYSTIFAQLLRLRQTCCHPILTRNKAIVADEEDAAAAADQDSDLKDDMDLQELINRFTATTSDAESSNEPPDPSMKFTAHALRQIQTESAGECPICSEEPMIDPAVTACWHSACKGCLKDYIQHQRDKGVQPRCFSCRADLNPQDIFEVVRYQSPNTTPTEQTPSSIGGDNVYSSSQPPPPPRISLRRINPLSPSAHTSAKIHAL---LAHLVRVPAGTKSVVFSQFTSFLDLIGPQLTKAGISFVRLDGTMAQKARAEVLAQFTK 1062          

HSP 2 Score: 73.1738 bits (178), Expect = 7.106e-12
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  678 GGILADEMGMGKTIQAIALVLAKRQVLHTIGEPNVSSQTAGSSTDLPRIRCTLVICPVVAVSQWVSEIDRFTSRGSTKVLVYHGANRGKNVKQF------SEYDFVITTYSIVEAEYR 1013
            GGILADEMG+GKTI+ ++LV + R +  T    N++      S  +P    TLV+ P+  ++QW  E  + +  GS KVL+Y+G  +  N+++       +  + ++T+Y +V +E+R
Sbjct:  512 GGILADEMGLGKTIEMLSLVHSHRNLPPTQSLGNLTRLPV--SGVVPAPYTTLVVAPMSLLAQWEGEALKASRNGSMKVLMYYGNEKNVNLREMCSAGNAAAPNMILTSYGVVMSEHR 627          
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Match: RAD5_CRYNB (DNA repair protein RAD5 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RAD5 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.922e-38
Identity = 122/448 (27.23%), Postives = 201/448 (44.87%), Query Frame = 3
Query: 1314 EGKSLLHSVKWERIILDEAHFVKDRRCNTAKAVLSLESLYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCKTLDYSSSTQCPKCPHNSVRHFCWWNKYVATPIQHYGNGEIGKRAMILLKHKILKNIVLRRTKKGRAAD----LALPPRIISLRRDTMDIKETDYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSSTAAQRAGNIV------NGDRN-----------------------------------DDEQVCGICNDPAEDPVVTACAHVFCKACLIDFSASLGN----VSCPSCS--------------RLLTVDLTTNADGGQSSKTTLKGFKSSSILNRIQLNDFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIKYSLHKSSIKCVQLVGSMSLAARDAAIKSF 2468
            EG SL +  ++ RI+LDEAH +++R    +KA   L+   +WAL+GTP+ NR+ +LYSL+ FL+I P+  Y                              ++  +V  P  +  +     +A+ ++++ IL++ +LRR K  R  D    + LPP+ + ++       E   Y+ L   ++ +F      G  M+NY  I  +L +LRQ VDHP LV+  S      G  +      NG+ N                                   +D  +C +C++   D V+  C H  C+ C++++  +  +     SCPSC               R   V+  T+A  G     +     ++  L ++   D  TSTK+ AL  ++  + + D  AK +VFSQFTSFLDLI+ +L K  I+ ++  G+MS A R   I+ F
Sbjct:  673 EGGSL-YDHEFLRIVLDEAHNIRNRLAMVSKACYELKGQRRWALTGTPIVNRLEDLYSLLHFLRITPWGNY-----------------------------SFFRSFVTVPFLNQDH-----KALNVVQY-ILESCLLRREKTMRDKDGRLIVDLPPKTVEIKVLQFSRAERQIYKFLEERAKKRFIELDADGRAMSNYTSILAMLMKLRQCVDHPLLVLGKSGEDGELGEKILESGAGNGEGNLRDMIAMYAGGIRAETPDDVDKAYAAKVLKELGEQEDTPICELCSNEMFDEVLLPCYHRSCQDCIVEWIGTCEDQNKIASCPSCGKGPIKLADLRSVQRRHKRVNPITDAYPGGRDPNSKSSNDTTVTLGKV---DLVTSTKLRALLRQLEEIRQEDPKAKALVFSQFTSFLDLIEATLTKQGIRWLRFDGTMSQAQRANTIEEF 1081          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068URB3_COFCA0.000e+066.96Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
K4C0N1_SOLLC0.000e+059.95Uncharacterized protein OS=Solanum lycopersicum GN... [more]
V7BY35_PHAVU0.000e+068.36Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
G7JEP7_MEDTR0.000e+069.39RING/U-box helicase OS=Medicago truncatula GN=MTR_... [more]
K4D0D1_SOLLC0.000e+066.37Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000197 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RHP16_SCHPO8.772e-10746.29ATP-dependent helicase rhp16 OS=Schizosaccharomyce... [more]
RAD16_YEAST1.934e-9541.23DNA repair protein RAD16 OS=Saccharomyces cerevisi... [more]
SM3L3_ARATH1.734e-5129.74Putative SWI/SNF-related matrix-associated actin-d... [more]
SM3L2_ARATH6.849e-5031.10Putative SWI/SNF-related matrix-associated actin-d... [more]
HLTF_HUMAN2.186e-4430.62Helicase-like transcription factor OS=Homo sapiens... [more]
RAD5_GIBZE3.813e-4329.75DNA repair protein RAD5 OS=Gibberella zeae (strain... [more]
HLTF_MOUSE4.157e-4331.34Helicase-like transcription factor OS=Mus musculus... [more]
HLTF_RABIT5.752e-4330.02Helicase-like transcription factor OS=Oryctolagus ... [more]
RAD5_EMENI3.968e-4029.10DNA repair protein rad5 OS=Emericella nidulans (st... [more]
RAD5_CRYNB3.922e-3827.23DNA repair protein RAD5 OS=Cryptococcus neoformans... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 633..672
e-value: 1.7E-6
score: 37.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 633..673
score: 12.106
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 158..478
e-value: 6.0E-28
score: 108.8
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 175..460
score: 15.162
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 158..290
e-value: 1.0E-29
score: 102.7
coord: 398..462
e-value: 1.0E-29
score: 102.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 711..781
e-value: 9.4E-5
score: 21.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 123..292
coord: 397..462
coord: 492..533
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 707..785
coord: 535..645
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 625..679
e-value: 7.1E-13
score: 47.4
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 633..672
e-value: 1.3E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 497..609
coord: 4..19
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 397..467
NoneNo IPR availablePANTHERPTHR10799:SF763SUBFAMILY NOT NAMEDcoord: 4..19
NoneNo IPR availablePANTHERPTHR10799:SF763SUBFAMILY NOT NAMEDcoord: 97..292
coord: 397..467
NoneNo IPR availablePANTHERPTHR10799:SF763SUBFAMILY NOT NAMEDcoord: 648..672
coord: 706..786
NoneNo IPR availablePANTHERPTHR10799:SF763SUBFAMILY NOT NAMEDcoord: 497..609
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 648..672
coord: 97..292
coord: 706..786
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 628..677
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 177..463
e-value: 3.6E-47
score: 160.6
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 648..657

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000197 ID=g.arboreum_cottongen_reftransV1_0000197; Name=g.arboreum_cottongen_reftransV1_0000197; organism=Gossypium arboreum; type=contig; length=2490bp
CAAGTCAACAATTACAACACCCCACATTCCCGCCGCCCAATCACCTATTT
CTTTCTCTCTCACTGATCATTCGTCTTCATTCAATCGGGAACTAAACGTC
AAATTCACTCCATTTACATCCTCCTTCCCAAATGCAGCTTCGATCGCGTA
AAAGGACCTCCAACTTCTCTACCAATGAAGAACACAGCGATAGTTCTGAC
CAAGCCGATAATTTTATCCAGTTGGATGATCTCTCCGATTCAGAAACCTA
TGTCCGTTCCTCCGATTCTGATCTAGGGGAAGAGGAGATTCTGGACTTAA
ACCATAAAGCAGTGAAAGCTGCTCCTATCACCATTTCTGATTTTACCGAG
CCTCCAACAAACAGAGGCAATGGTGAACAGATACTATCTGAGCAAAATGA
AAGCCAGTTTGACTTTAATGTGTCAACCGCGAAGAAGAGAAACAATACAA
AAAGGAAAAAGAAGGCTAGGTCTGGGCAACCGTTAATGTGGGAAGTTTGG
GAACAAGAGCATGAGAAATGGATTGATGAGAATTTGACGGTAGATGTTGA
TCTTGATCAACAGAATGCGGTAATAACTGAGACTTCTGACGCATCATCCG
ACTTAATTATTCCTTTGTTGAGGTACCAAAAGGAATGGTTGGCCTGGGCT
CTGAAACAGGAAGACTCAAATACCAAAGGGGGAATCCTTGCAGATGAGAT
GGGAATGGGGAAGACCATTCAAGCGATAGCCCTTGTCCTTGCCAAACGTC
AAGTACTCCATACAATTGGTGAACCCAATGTTTCGTCACAGACTGCAGGT
TCATCAACAGATTTGCCCAGGATAAGATGCACCCTTGTTATTTGTCCGGT
TGTTGCGGTGAGTCAGTGGGTAAGTGAGATTGATCGGTTTACTTCAAGGG
GAAGCACCAAGGTGTTGGTTTACCATGGTGCCAATAGAGGGAAAAATGTG
AAACAGTTCTCAGAATATGATTTTGTAATAACAACATATTCGATTGTTGA
GGCTGAATATAGGAAATTCATGATGCCACCAAAGGAGAAATGCCCTTACT
GTGGGAAGTCATTTCACCAAAAGAAGCTCTCCGTTCACTTGAAATATTAT
TGTGGGCCTGATGCTATTAAAACAGAAAACCAATCTAAGCAAGAGAGAAA
GAAACCAAAATCTATGTTCAAGTCAGGCAAAAAACATGCTAGTAATTATG
AAGCTGATTCCAGAAAGAGGGCTAGCAAGAAGAAAGCAAAGCATAATAAG
GAAGACAAAGACAGAGACTTTGAGTTTGATGAAACTTCTGCAGGCAAAGA
ACATAACTTGCCTGAGGGAAAATCACTTCTACACTCTGTGAAGTGGGAGC
GCATCATCTTGGATGAGGCTCATTTTGTGAAAGATAGACGTTGTAATACT
GCAAAGGCTGTCCTTTCTTTGGAATCCTTATACAAATGGGCTTTGAGTGG
CACTCCACTGCAGAATCGTGTTGGAGAACTGTACTCTTTGGTTCGCTTCT
TGCAAATAGTTCCATACTCCTATTACTTGTGCAAAGATTGTGACTGCAAA
ACTCTTGATTATAGTTCATCAACACAATGCCCAAAGTGCCCCCATAATTC
TGTGAGGCATTTTTGTTGGTGGAATAAGTATGTGGCTACGCCAATACAAC
ATTATGGAAATGGTGAGATCGGGAAAAGAGCTATGATATTGCTAAAACAC
AAAATTTTGAAGAACATTGTCCTAAGGCGTACCAAGAAAGGCAGGGCTGC
TGATCTTGCTCTTCCTCCTAGAATTATTTCCTTGAGACGGGACACCATGG
ACATTAAAGAAACTGACTATTATGAATCTTTGTACAGTGAAAGTCAGGCA
CAATTTAACACATATGTTCAAGCAGGAACTGTAATGAACAATTATGCTCA
CATTTTTGACCTCCTCACACGCTTGCGGCAGGCTGTTGATCACCCTTACC
TTGTAGTATATTCGAGTACTGCTGCACAAAGAGCTGGAAACATAGTCAAT
GGTGATAGGAATGATGATGAACAAGTTTGTGGCATTTGCAATGATCCTGC
AGAAGATCCAGTGGTTACTGCATGTGCACATGTCTTCTGCAAAGCTTGTC
TGATTGATTTTTCTGCCTCCCTGGGAAATGTCTCATGCCCCTCATGCTCA
AGATTACTTACTGTTGATCTGACTACGAATGCAGATGGAGGGCAATCTAG
CAAAACAACACTGAAGGGGTTTAAATCCTCAAGTATTCTGAACAGAATTC
AATTAAATGATTTTCAGACGAGCACTAAAATAGAGGCTTTGAGGGAAGAA
ATCAGATTCATGGTGGAAAGAGATGGTTCTGCGAAGGGAATTGTTTTCAG
CCAATTCACATCTTTCTTGGATCTCATAAAATACTCCCTTCATAAGTCCA
GCATAAAATGTGTTCAACTAGTAGGGAGCATGTCCTTGGCTGCGAGAGAT
GCTGCAATTAAGAGTTTTACTGAGGATCCAGATTGCAAGA
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
IPR013083Znf_RING/FYVE/PHD
IPR000330SNF2_N
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO:0005524ATP binding