g.arboreum_cottongen_reftransV1_0014341, g.arboreum_cottongen_reftransV1_0014341 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0014341
Unique Nameg.arboreum_cottongen_reftransV1_0014341
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr11chromosomeg.arboreum_cottongen_reftransV1_0014341:1..538 .
Chr11:15598755..15599292 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: I3S1V7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 2.301e-101
Identity = 146/179 (81.56%), Postives = 164/179 (91.62%), Query Frame = -3 
Query:    6 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCS-GEHEGL-KYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACK 536
            GPEPVDGFYVL++VDSEIGLVLGD+A ETV+KKFK  +PVAKVSL+SR+EHCSG +LY+TKAQFCD+G  HD+LIRCS  E EGL K PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDL+WD +DWFFNP +G AVF+FRTRSGLDSRLWLEEK+ QKD+DRVEFSLLI+ACK
Sbjct:  130 GPEPVDGFYVLILVDSEIGLVLGDVAGETVSKKFKINSPVAKVSLLSRREHCSGNSLYTTKAQFCDSGTWHDVLIRCSVEESEGLFKSPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLLWDVHDWFFNPASGDAVFMFRTRSGLDSRLWLEEKIAQKDKDRVEFSLLIYACK 308
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: V7BVU0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G126700g PE=4 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.147e-99
Identity = 141/178 (79.21%), Postives = 160/178 (89.89%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYV ++VD+EIGLVLG   EE V KKFK  T +AKVSL+SR+EHCSG  +Y+TKAQFCDTG  HDILIRCSGE+EGLK PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDL+WD ++WFFNP +G AVF+FRTRSGLDSRLWLEEK+ QKD+DRVEFSLLI+ACK+
Sbjct:  125 GPEPVEGFYVAILVDAEIGLVLG---EEDVVKKFKTRTLLAKVSLLSRREHCSGNAVYATKAQFCDTGTWHDILIRCSGENEGLKAPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLLWDVHNWFFNPASGYAVFMFRTRSGLDSRLWLEEKIAQKDKDRVEFSLLIYACKS 299
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A5C6X2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033681 PE=4 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.662e-98
Identity = 144/178 (80.90%), Postives = 164/178 (92.13%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYV+V+VDSEIGL+LGD+AEE  T+K K+ TPVAK SL+SR+EHCSG TLYSTKAQFCDTG  HDILI+CSGE+EGLK+PVLSV IDKK VIRVKRLQWNFRGNQTIFVDGLLVDLMWD + WFFNP +G AVF+FRTRSG+DSRLWLEEKL+QKDQDR+EFSLLI+ACK+
Sbjct:  895 GPEPVEGFYVMVVVDSEIGLLLGDIAEEAATRKLKSGTPVAKASLVSRREHCSGNTLYSTKAQFCDTGTAHDILIKCSGENEGLKHPVLSVSIDKKVVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHGWFFNPASGYAVFMFRTRSGMDSRLWLEEKLLQKDQDRLEFSLLIYACKS 1072
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: I1MS59_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.924e-97
Identity = 137/178 (76.97%), Postives = 155/178 (87.08%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYV ++VD+EIGL LG    E VTKKFK  T +  VSL+SR+EHCSG  +Y+TKAQFCDTG  HDILIRCSGE+EGLK P LSVCIDKKTVIRVKRLQWNFRGN TIFVDGLLVDL+WD ++WFFNP +G AVF+FRTRSGLDSRLWLEEK+ QKD+DRVEFSLLI+ACKN
Sbjct:  128 GPEPVEGFYVAILVDAEIGLALG----EDVTKKFKTKTLLGNVSLLSRREHCSGNAVYATKAQFCDTGTRHDILIRCSGENEGLKAPALSVCIDKKTVIRVKRLQWNFRGNHTIFVDGLLVDLLWDVHNWFFNPASGYAVFMFRTRSGLDSRLWLEEKIAQKDKDRVEFSLLIYACKN 301
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A0B2QJA8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021030 PE=4 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.924e-97
Identity = 137/178 (76.97%), Postives = 155/178 (87.08%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYV ++VD+EIGL LG    E VTKKFK  T +  VSL+SR+EHCSG  +Y+TKAQFCDTG  HDILIRCSGE+EGLK P LSVCIDKKTVIRVKRLQWNFRGN TIFVDGLLVDL+WD ++WFFNP +G AVF+FRTRSGLDSRLWLEEK+ QKD+DRVEFSLLI+ACKN
Sbjct:  128 GPEPVEGFYVAILVDAEIGLALG----EDVTKKFKTKTLLGNVSLLSRREHCSGNAVYATKAQFCDTGTRHDILIRCSGENEGLKAPALSVCIDKKTVIRVKRLQWNFRGNHTIFVDGLLVDLLWDVHNWFFNPASGYAVFMFRTRSGLDSRLWLEEKIAQKDKDRVEFSLLIYACKN 301
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: C6T7U3_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 6.722e-97
Identity = 137/178 (76.97%), Postives = 157/178 (88.20%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYV ++VD+EIGL+LG    E V KKFK  T +  VSL+SR+EHCSG  +Y+TKAQFCDTG  HDILIRCSGE+EGLK PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDL+WD ++WFFNP +G+AVF+FRTRSGLDSRLWLEEK+ QKD+DRVEFSLLI+A KN
Sbjct:  127 GPEPVEGFYVAILVDAEIGLILG----EDVAKKFKTRTLLGNVSLLSRREHCSGNAVYATKAQFCDTGTWHDILIRCSGENEGLKAPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLLWDVHNWFFNPASGNAVFMFRTRSGLDSRLWLEEKIAQKDKDRVEFSLLIYAYKN 300
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A0B2R139_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026238 PE=4 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 7.421e-97
Identity = 137/178 (76.97%), Postives = 157/178 (88.20%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+GFYV ++VD+EIGL+LG    E V KKFK  T +  VSL+SR+EHCSG  +Y+TKAQFCDTG  HDILIRCSGE+EGLK PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDL+WD ++WFFNP +G+AVF+FRTRSGLDSRLWLEEK+ QKD+DRVEFSLLI+A KN
Sbjct:  125 GPEPVEGFYVAILVDAEIGLILG----EDVAKKFKTRTLLGNVSLLSRREHCSGNAVYATKAQFCDTGTWHDILIRCSGENEGLKAPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLLWDVHNWFFNPASGNAVFMFRTRSGLDSRLWLEEKIAQKDKDRVEFSLLIYAYKN 298
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A059DAA5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03892 PE=4 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.185e-95
Identity = 137/178 (76.97%), Postives = 153/178 (85.96%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+ FYVLV +DSE+GL LGDMAEE + KKFK    VAK SL+SR+EHCSG TLYSTKAQF DTGIVHDILIRCS E+EG K+PVLSV IDKK V+RVKRLQWNFRGNQTIF DGLLVDLMWD +DWFFNP  G AVF+FRTRSG DSRLWLEEK+  +DQDR+EFSLLI+A K+
Sbjct:  122 GPEPVEEFYVLVTIDSELGLFLGDMAEEAIAKKFKTGNAVAKFSLVSRREHCSGNTLYSTKAQFSDTGIVHDILIRCSCENEGFKHPVLSVYIDKKMVMRVKRLQWNFRGNQTIFTDGLLVDLMWDLHDWFFNPALGYAVFMFRTRSGFDSRLWLEEKM--EDQDRIEFSLLIYASKS 297
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A059D9L8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03892 PE=4 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 6.680e-95
Identity = 137/178 (76.97%), Postives = 153/178 (85.96%), Query Frame = -3 
Query:    3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536
            GPEPV+ FYVLV +DSE+GL LGDMAEE + KKFK    VAK SL+SR+EHCSG TLYSTKAQF DTGIVHDILIRCS E+EG K+PVLSV IDKK V+RVKRLQWNFRGNQTIF DGLLVDLMWD +DWFFNP  G AVF+FRTRSG DSRLWLEEK+  +DQDR+EFSLLI+A K+
Sbjct:  171 GPEPVEEFYVLVTIDSELGLFLGDMAEEAIAKKFKTGNAVAKFSLVSRREHCSGNTLYSTKAQFSDTGIVHDILIRCSCENEGFKHPVLSVYIDKKMVMRVKRLQWNFRGNQTIFTDGLLVDLMWDLHDWFFNPALGYAVFMFRTRSGFDSRLWLEEKM--EDQDRIEFSLLIYASKS 346
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: V4SKF5_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10029846mg PE=4 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 9.138e-95
Identity = 132/158 (83.54%), Postives = 146/158 (92.41%), Query Frame = -3 
Query:   63 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEK 536
            GPEPV+GFYVLVMVDSEIGL+LG++ E+ VTKK KN++  AKVSL+SR+EHCSG  LYSTKAQFCDTGI HDILIRC GE+EGLK+PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWD +DWFFNP +G AVF+FRTRSGLDSRLWLEEK
Sbjct:  121 GPEPVEGFYVLVMVDSEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPASGYAVFMFRTRSGLDSRLWLEEK 278
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I3S1V7_LOTJA2.301e-10181.56Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
V7BVU0_PHAVU1.147e-9979.21Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A5C6X2_VITVI1.662e-9880.90Putative uncharacterized protein OS=Vitis vinifera... [more]
I1MS59_SOYBN1.924e-9776.97Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2QJA8_GLYSO1.924e-9776.97Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
C6T7U3_SOYBN6.722e-9776.97Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A0B2R139_GLYSO7.421e-9776.97Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A059DAA5_EUCGR2.185e-9576.97Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A059D9L8_EUCGR6.680e-9576.97Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
V4SKF5_9ROSI9.138e-9583.54Uncharacterized protein (Fragment) OS=Citrus cleme... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008586Protein of unknown function DUF868, plantPFAMPF05910DUF868coord: 1..165
e-value: 7.7E-54
score: 183.0
NoneNo IPR availablePANTHERPTHR31972FAMILY NOT NAMEDcoord: 1..166
NoneNo IPR availablePANTHERPTHR31972:SF10SUBFAMILY NOT NAMEDcoord: 1..166

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0014341 ID=g.arboreum_cottongen_reftransV1_0014341; Name=g.arboreum_cottongen_reftransV1_0014341; organism=Gossypium arboreum; type=contig; length=538bp
GTGTTCTTACAGGCATGAATCAACAAGGAGAATTCAACTCTGTCTTGGTC
TTTCTGCACCAACTTCTCCTCCAACCAAAGCCGGCTATCCAAACCACTTC
TTGTCCTAAATAAGAACACAGCTGAACCAGTAACAGGATTGAAGAACCAG
TCATAGGCATCCCACATCAGATCAACTAACAATCCATCAACAAATATCGT
CTGGTTTCCTCTAAAATTCCATTGCAGCCTCTTTACTCGAATCACCGTCT
TCTTATCGATACAAACCGATAAAACCGGGTACTTCAGGCCTTCATGTTCA
CCACTGCATCTGATTAGAATATCATGTACAATGCCTGTATCACAGAATTG
AGCCTTCGTGGAATACAGCGTAGTGCCAGAACAATGTTCTTGCCTGGAAA
TGAGGGAGACTTTAGCAACTGGGGTTGCATTTTTGAACTTCTTGGTGACC
GTTTCTTCAGCCATATCGCCTAAAACAAGGCCTATCTCGGAATCAACCAT
GACTAAAACATAGAACCCATCAACAGGTTCGGGTCCCG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR008586DUF868_pln