g.arboreum_cottongen_reftransV1_0009178, g.arboreum_cottongen_reftransV1_0009178 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: D7T781_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04630 PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 6.847e-55 Identity = 97/118 (82.20%), Postives = 105/118 (88.98%), Query Frame = 3 Query: 3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356 ITRI+PS+TYIAAEEVM LVTAQVAE+SELNEVWKDILNAEGDEIYVKDI LYMK GE SFSEL+ERA LR EVAIGY+KNNK VINP PKS+PLSLE D LIVISELEG QP+V+ Sbjct: 729 ITRIRPSLTYIAAEEVMGLVTAQVAENSELNEVWKDILNAEGDEIYVKDIRLYMKPGENPSFSELAERAHLRQEVAIGYVKNNKKVINPIPKSEPLSLEMTDSLIVISELEGAQPIVM 846
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: B9HKD4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16060g PE=4 SV=2) HSP 1 Score: 194.897 bits (494), Expect = 9.189e-55 Identity = 96/118 (81.36%), Postives = 108/118 (91.53%), Query Frame = 3 Query: 3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356 I+RIKPS+TYIAAEEVMSLVTAQVAE+SELNEVWKDILNAEGDEIYVKDINLYMKEGE SF+ELSERA+LR EVAIGY+K+++ VINP KS+PLSL D LIVISELEGEQP+V+ Sbjct: 736 ISRIKPSLTYIAAEEVMSLVTAQVAENSELNEVWKDILNAEGDEIYVKDINLYMKEGENPSFAELSERAYLRREVAIGYVKDSRKVINPNVKSEPLSLSLTDALIVISELEGEQPIVL 853
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A059AUD0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00218 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 1.574e-54 Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 3 Query: 3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVV 353 I RIKPS+TYIAAEEVMSLVTAQVAE+SELNEVWKDIL+A+GDEIYVKDI+LYM +GE SF ELSERA LR EVAIGY+KNNK V+NP PKS+PLSLE+ D LIVISELEGEQP+V Sbjct: 738 IARIKPSLTYIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDISLYMTKGENPSFHELSERAHLRREVAIGYVKNNKKVLNPIPKSEPLSLESTDSLIVISELEGEQPIV 854
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: V7BHD5_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_007G1100001g PE=4 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.660e-54 Identity = 94/118 (79.66%), Postives = 105/118 (88.98%), Query Frame = 3 Query: 3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356 I+RIKPSVTYIAAEE+MSLVTAQVAE+SELNEVWKD+L+A+GDEIYVK I LYMKEGE SF ELSERA+LR E+AIGY+KN K VINP PKS+ LSLE D LIVISELEGEQPVV+ Sbjct: 344 ISRIKPSVTYIAAEEIMSLVTAQVAENSELNEVWKDVLDADGDEIYVKSIGLYMKEGENPSFYELSERAYLRREIAIGYVKNKKNVINPVPKSESLSLEMTDSLIVISELEGEQPVVL 461
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: Q570E0_ARATH (Putative uncharacterized protein At5g02940 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 2.440e-54 Identity = 91/118 (77.12%), Postives = 105/118 (88.98%), Query Frame = 3 Query: 3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356 ITR+KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+AEGDEIYVKDI LYMKEGE SF+ELSERA+LR EVAIGYIK K +INP PK++P+SLE D LIVISELEG+Q + + Sbjct: 132 ITRLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKIINPVPKTEPVSLEMEDSLIVISELEGDQVITL 249
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLL1_ARATH (Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.105e-53 Identity = 91/118 (77.12%), Postives = 105/118 (88.98%), Query Frame = 3 Query: 3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356 ITR+KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+AEGDEIYVKDI LYMKEGE SF+ELSERA+LR EVAIGYIK K +INP PK++P+SLE D LIVISELEG+Q + + Sbjct: 696 ITRLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKIINPVPKTEPVSLEMEDSLIVISELEGDQVITL 813
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLL2_ARATH (Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.085e-52 Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 3 Query: 3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356 IT +KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+A+GDEIYVKD+ LYMKEGE SF+ELSERA+LR EVAIGYIK K +INP PK++PLSLE D LIVISELEG+QP+ + Sbjct: 700 ITGLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: CASTO_LOTJA (Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-13 Identity = 37/104 (35.58%), Postives = 66/104 (63.46%), Query Frame = 3 Query: 30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVISELE 335 Y+ + E++S+ A VAE ++N+V +++ EG+E++++ ++Y++EGE++SF E+ RA R E+ IGY N + VINP K+ D+ +VI+E E Sbjct: 750 YVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQADIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPAKTGRRKWSLKDVFVVITEKE 853
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: CASTO_ORYSJ (Probable ion channel CASTOR OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 5.717e-11 Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 3 Query: 30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISELE 335 Y+ + E++S+ A VAE ++N+V +++ +G+E+ ++ +LY++E E+L+F E+ R R E+ IGY + + +INP K D+ +VI+E E Sbjct: 790 YVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_ORYSJ (Probable ion channel POLLUX OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 6.791e-11 Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 3 Query: 30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISE 329 Y+ + E++S+ A VAE ++N V +++ EG+E+ ++ Y+ E E+LSF ++ RA R EV IGY +++ +INP KS+ D+ +VIS+ Sbjct: 840 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIRSAEFYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKSEIRKWSLDDVFVVISK 941
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: DMI1_MEDTR (Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 4.300e-10 Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVISELE 335 Y+ + E++S+ A VAE ++N V +++ EG+E+ +K Y+ + E+L F ++ R R E+ IGY N + +INP+ KS P D+ +V++ E Sbjct: 779 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE 882
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_ARATH (Probable ion channel POLLUX OS=Arabidopsis thaliana GN=At5g49960 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.148e-9 Identity = 32/101 (31.68%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVIS 326 Y+ + E++S+ A VAE ++N V K++ +G+E+ ++ Y+ + E++ F ++ RA R E+ IGY + VINPT KS+ D+ +VI+ Sbjct: 721 YVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEFYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIA 821
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: SYM8_PEA (Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3) HSP 1 Score: 58.5362 bits (140), Expect = 4.016e-9 Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 3 Query: 30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISELE 335 Y+ + E++S+ A VAE ++N V +++ EG+E+ +K Y+ + E+L F ++ R R E+ IGY + +INP+ KS D+ +VI+ E Sbjct: 791 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLASQERALINPSEKSMTRKWSLDDVFVVIASGE 894
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_LOTJA (Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE=1 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 6.496e-8 Identity = 30/101 (29.70%), Postives = 56/101 (55.45%), Query Frame = 3 Query: 30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVIS 326 Y+ + E++S+ A VAE ++N V +++ +G+E+ +K Y+ + E+L F ++ R R E+ IGY N + +INP+ K D+ +VI+ Sbjct: 814 YVLSNELVSMALAMVAEDKQINRVLEELFAEQGNEMCIKPAEFYLFDQEELCFYDIMIRGRARQEIIIGYRLANQERAIINPSEKLVARKWSLGDVFVVIA 914 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 9
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009178 ID=g.arboreum_cottongen_reftransV1_0009178; Name=g.arboreum_cottongen_reftransV1_0009178; organism=Gossypium arboreum; type=contig; length=501bpback to top |