g.arboreum_cottongen_reftransV1_0009178, g.arboreum_cottongen_reftransV1_0009178 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009178
Unique Nameg.arboreum_cottongen_reftransV1_0009178
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0009178:1..501 .
Chr5:27336659..27337858 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: D7T781_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04630 PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 6.847e-55
Identity = 97/118 (82.20%), Postives = 105/118 (88.98%), Query Frame = 3
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRI+PS+TYIAAEEVM LVTAQVAE+SELNEVWKDILNAEGDEIYVKDI LYMK GE  SFSEL+ERA LR EVAIGY+KNNK VINP PKS+PLSLE  D LIVISELEG QP+V+
Sbjct:  729 ITRIRPSLTYIAAEEVMGLVTAQVAENSELNEVWKDILNAEGDEIYVKDIRLYMKPGENPSFSELAERAHLRQEVAIGYVKNNKKVINPIPKSEPLSLEMTDSLIVISELEGAQPIVM 846          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: B9HKD4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16060g PE=4 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 9.189e-55
Identity = 96/118 (81.36%), Postives = 108/118 (91.53%), Query Frame = 3
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            I+RIKPS+TYIAAEEVMSLVTAQVAE+SELNEVWKDILNAEGDEIYVKDINLYMKEGE  SF+ELSERA+LR EVAIGY+K+++ VINP  KS+PLSL   D LIVISELEGEQP+V+
Sbjct:  736 ISRIKPSLTYIAAEEVMSLVTAQVAENSELNEVWKDILNAEGDEIYVKDINLYMKEGENPSFAELSERAYLRREVAIGYVKDSRKVINPNVKSEPLSLSLTDALIVISELEGEQPIVL 853          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A059AUD0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00218 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 1.574e-54
Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 3
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVV 353
            I RIKPS+TYIAAEEVMSLVTAQVAE+SELNEVWKDIL+A+GDEIYVKDI+LYM +GE  SF ELSERA LR EVAIGY+KNNK V+NP PKS+PLSLE+ D LIVISELEGEQP+V
Sbjct:  738 IARIKPSLTYIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDISLYMTKGENPSFHELSERAHLRREVAIGYVKNNKKVLNPIPKSEPLSLESTDSLIVISELEGEQPIV 854          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: V7BHD5_PHAVU (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_007G1100001g PE=4 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.660e-54
Identity = 94/118 (79.66%), Postives = 105/118 (88.98%), Query Frame = 3
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            I+RIKPSVTYIAAEE+MSLVTAQVAE+SELNEVWKD+L+A+GDEIYVK I LYMKEGE  SF ELSERA+LR E+AIGY+KN K VINP PKS+ LSLE  D LIVISELEGEQPVV+
Sbjct:  344 ISRIKPSVTYIAAEEIMSLVTAQVAENSELNEVWKDVLDADGDEIYVKSIGLYMKEGENPSFYELSERAYLRREIAIGYVKNKKNVINPVPKSESLSLEMTDSLIVISELEGEQPVVL 461          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: Q570E0_ARATH (Putative uncharacterized protein At5g02940 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.440e-54
Identity = 91/118 (77.12%), Postives = 105/118 (88.98%), Query Frame = 3
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITR+KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+AEGDEIYVKDI LYMKEGE  SF+ELSERA+LR EVAIGYIK  K +INP PK++P+SLE  D LIVISELEG+Q + +
Sbjct:  132 ITRLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKIINPVPKTEPVSLEMEDSLIVISELEGDQVITL 249          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLL1_ARATH (Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.105e-53
Identity = 91/118 (77.12%), Postives = 105/118 (88.98%), Query Frame = 3
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITR+KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+AEGDEIYVKDI LYMKEGE  SF+ELSERA+LR EVAIGYIK  K +INP PK++P+SLE  D LIVISELEG+Q + +
Sbjct:  696 ITRLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKIINPVPKTEPVSLEMEDSLIVISELEGDQVITL 813          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLL2_ARATH (Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.085e-52
Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 3
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            IT +KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+A+GDEIYVKD+ LYMKEGE  SF+ELSERA+LR EVAIGYIK  K +INP PK++PLSLE  D LIVISELEG+QP+ +
Sbjct:  700 ITGLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: CASTO_LOTJA (Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-13
Identity = 37/104 (35.58%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N+V +++   EG+E++++  ++Y++EGE++SF E+  RA  R E+ IGY   N  + VINP  K+        D+ +VI+E E
Sbjct:  750 YVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQADIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPAKTGRRKWSLKDVFVVITEKE 853          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: CASTO_ORYSJ (Probable ion channel CASTOR OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.717e-11
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 3
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N+V +++   +G+E+ ++  +LY++E E+L+F E+  R   R E+ IGY  +   + +INP  K         D+ +VI+E E
Sbjct:  790 YVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_ORYSJ (Probable ion channel POLLUX OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.791e-11
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 3
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISE 329
            Y+ + E++S+  A VAE  ++N V +++   EG+E+ ++    Y+ E E+LSF ++  RA  R EV IGY    +++ +INP  KS+       D+ +VIS+
Sbjct:  840 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIRSAEFYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKSEIRKWSLDDVFVVISK 941          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: DMI1_MEDTR (Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.300e-10
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 3
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N V +++   EG+E+ +K    Y+ + E+L F ++  R   R E+ IGY   N  + +INP+ KS P      D+ +V++  E
Sbjct:  779 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE 882          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_ARATH (Probable ion channel POLLUX OS=Arabidopsis thaliana GN=At5g49960 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.148e-9
Identity = 32/101 (31.68%), Postives = 58/101 (57.43%), Query Frame = 3
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVIS 326
            Y+ + E++S+  A VAE  ++N V K++   +G+E+ ++    Y+ + E++ F ++  RA  R E+ IGY      + VINPT KS+       D+ +VI+
Sbjct:  721 YVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEFYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIA 821          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: SYM8_PEA (Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 4.016e-9
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 3
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N V +++   EG+E+ +K    Y+ + E+L F ++  R   R E+ IGY      + +INP+ KS        D+ +VI+  E
Sbjct:  791 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLASQERALINPSEKSMTRKWSLDDVFVVIASGE 894          
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_LOTJA (Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 6.496e-8
Identity = 30/101 (29.70%), Postives = 56/101 (55.45%), Query Frame = 3
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVIS 326
            Y+ + E++S+  A VAE  ++N V +++   +G+E+ +K    Y+ + E+L F ++  R   R E+ IGY   N  + +INP+ K         D+ +VI+
Sbjct:  814 YVLSNELVSMALAMVAEDKQINRVLEELFAEQGNEMCIKPAEFYLFDQEELCFYDIMIRGRARQEIIIGYRLANQERAIINPSEKLVARKWSLGDVFVVIA 914          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7T781_VITVI6.847e-5582.20Putative uncharacterized protein OS=Vitis vinifera... [more]
B9HKD4_POPTR9.189e-5581.36Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A059AUD0_EUCGR1.574e-5481.20Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
V7BHD5_PHAVU1.660e-5479.66Uncharacterized protein (Fragment) OS=Phaseolus vu... [more]
Q570E0_ARATH2.440e-5477.12Putative uncharacterized protein At5g02940 OS=Arab... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
POLL1_ARATH9.105e-5377.12Putative ion channel POLLUX-like 1 OS=Arabidopsis ... [more]
POLL2_ARATH1.085e-5276.27Putative ion channel POLLUX-like 2 OS=Arabidopsis ... [more]
CASTO_LOTJA1.535e-1335.58Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE... [more]
CASTO_ORYSJ5.717e-1131.73Probable ion channel CASTOR OS=Oryza sativa subsp.... [more]
POLLU_ORYSJ6.791e-1134.31Probable ion channel POLLUX OS=Oryza sativa subsp.... [more]
DMI1_MEDTR4.300e-1031.73Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE... [more]
POLLU_ARATH1.148e-931.68Probable ion channel POLLUX OS=Arabidopsis thalian... [more]
SYM8_PEA4.016e-930.77Probable ion channel SYM8 OS=Pisum sativum GN=SYM8... [more]
POLLU_LOTJA6.496e-829.70Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31563:SF2ION CHANNEL POLLUX-LIKE 1-RELATEDcoord: 1..98
NoneNo IPR availablePANTHERPTHR31563FAMILY NOT NAMEDcoord: 1..98

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009178 ID=g.arboreum_cottongen_reftransV1_0009178; Name=g.arboreum_cottongen_reftransV1_0009178; organism=Gossypium arboreum; type=contig; length=501bp
AAATTACAAGAATCAAGCCATCCGTGACTTATATTGCGGCTGAGGAAGTG
ATGAGTCTTGTAACGGCTCAAGTCGCTGAACACAGTGAGCTGAATGAGGT
GTGGAAAGACATTTTAAATGCTGAAGGTGATGAAATATATGTAAAGGATA
TAAACCTATACATGAAAGAAGGGGAGAAGCTGTCGTTCTCAGAGCTATCC
GAAAGGGCATTTTTGCGAGGAGAAGTTGCAATAGGATATATCAAAAACAA
CAAAACTGTTATTAACCCAACTCCCAAGTCACAACCTCTGTCCCTAGAAA
CGATAGATTTACTAATTGTTATATCAGAGCTGGAAGGAGAGCAACCTGTT
GTTGTCTGAATACTAAATACATCATCCTTGCTTGTTTATCTTTTCAGTCT
CATAGTGAGGATTAGAGATTGAGAGAAACTTCTTGAATTTGCTGACTAGT
GAAATTTAGAATTGTTGTTTGAAGAAAATGTAGTATTTTATGATTGTAAA
T
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