g.arboreum_cottongen_reftransV1_0009178, g.arboreum_cottongen_reftransV1_0009178 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0009178
Unique Nameg.arboreum_cottongen_reftransV1_0009178
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0009178:1..501 .
Chr5:27336659..27337858 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A0D2NXZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G245700 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.149e-57
Identity = 99/118 (83.90%), Postives = 107/118 (90.68%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRIKPS+TYIAAEEVMSLVTAQVA+HSELNEVWKDILNAEGDEIYVKDI LYMKEGE  SFSEL+ERA  R EVAIGY+K+N  VINPTPK++PLSL   DLLIVISELEGEQP+VV
Sbjct:  565 ITRIKPSLTYIAAEEVMSLVTAQVAKHSELNEVWKDILNAEGDEIYVKDIGLYMKEGENPSFSELTERACWRQEVAIGYVKDNHKVINPTPKTEPLSLGMSDLLIVISELEGEQPIVV 682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A0B0NDY6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_16870 PE=4 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.821e-57
Identity = 99/118 (83.90%), Postives = 108/118 (91.53%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRIKPS+TYIAAEEVMSLVTAQVA+HSELNEVWKDILNAEGDEIYVKDI+LYMKEGE  SFSEL+ERA  R EVAIGY+K+N  VINPTPK++PLSL   DLLIVISELEGEQP+VV
Sbjct:  653 ITRIKPSLTYIAAEEVMSLVTAQVAKHSELNEVWKDILNAEGDEIYVKDISLYMKEGENPSFSELTERACWRQEVAIGYVKDNHKVINPTPKTEPLSLGMSDLLIVISELEGEQPIVV 770
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A072VLS8_MEDTR (Ion channel pollux-like protein OS=Medicago truncatula GN=MTR_1g076330 PE=4 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.859e-56
Identity = 97/118 (82.20%), Postives = 109/118 (92.37%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRIKPSVTY+AAEE++SLVTAQVAE+SELNEVWKDIL+A+GDEIYVKDI+LYMKEGE  SFSELSERA+LR EVAIGY+K NK VINP PKS+PLSLE  D LIVISELEGEQPV++
Sbjct:  644 ITRIKPSVTYVAAEEILSLVTAQVAENSELNEVWKDILDADGDEIYVKDISLYMKEGENPSFSELSERAYLRREVAIGYVKKNKNVINPIPKSEPLSLELTDSLIVISELEGEQPVIL 761
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A072VL92_MEDTR (Ion channel pollux-like protein OS=Medicago truncatula GN=MTR_1g076330 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 5.954e-56
Identity = 97/118 (82.20%), Postives = 109/118 (92.37%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRIKPSVTY+AAEE++SLVTAQVAE+SELNEVWKDIL+A+GDEIYVKDI+LYMKEGE  SFSELSERA+LR EVAIGY+K NK VINP PKS+PLSLE  D LIVISELEGEQPV++
Sbjct:  722 ITRIKPSVTYVAAEEILSLVTAQVAENSELNEVWKDILDADGDEIYVKDISLYMKEGENPSFSELSERAYLRREVAIGYVKKNKNVINPIPKSEPLSLELTDSLIVISELEGEQPVIL 839
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A068VJG9_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_1573 OS=Coffea canephora GN=GSCOC_T00001288001 PE=4 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.591e-56
Identity = 96/118 (81.36%), Postives = 109/118 (92.37%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRIKPS+TYIAAEEVMSLVTAQVAE++ELNEVWKDILNAEGDEIYVKDI+LYM+ GE  SF+EL+ERA LRGEVAIGY+KNNK VINP PKS+PLSL+ ID LIVISE+EGEQP+ +
Sbjct:  586 ITRIKPSLTYIAAEEVMSLVTAQVAENNELNEVWKDILNAEGDEIYVKDISLYMQSGENPSFAELAERANLRGEVAIGYMKNNKKVINPVPKSEPLSLQLIDHLIVISEMEGEQPIAL 703
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A072VLT4_MEDTR (Ion channel pollux-like protein OS=Medicago truncatula GN=MTR_1g076330 PE=4 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 6.834e-56
Identity = 97/118 (82.20%), Postives = 109/118 (92.37%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRIKPSVTY+AAEE++SLVTAQVAE+SELNEVWKDIL+A+GDEIYVKDI+LYMKEGE  SFSELSERA+LR EVAIGY+K NK VINP PKS+PLSLE  D LIVISELEGEQPV++
Sbjct:  738 ITRIKPSVTYVAAEEILSLVTAQVAENSELNEVWKDILDADGDEIYVKDISLYMKEGENPSFSELSERAYLRREVAIGYVKKNKNVINPIPKSEPLSLELTDSLIVISELEGEQPVIL 855
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A067L872_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02267 PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.631e-56
Identity = 97/117 (82.91%), Postives = 106/117 (90.60%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVV 353
            ITRIKP++TYIAAEEVMSLVTAQVAE+SELNEVWKDILNAEGDEIYVKDI LYMKEGE  SFSELSERA+LRGEVAIGY+K+NK VINP PK +PLSL   D LIVISELEG QP++
Sbjct:  663 ITRIKPTLTYIAAEEVMSLVTAQVAENSELNEVWKDILNAEGDEIYVKDIGLYMKEGETPSFSELSERAYLRGEVAIGYVKDNKKVINPIPKFEPLSLGMTDALIVISELEGAQPII 779
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: W4ZUS8_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.925e-55
Identity = 89/116 (76.72%), Postives = 102/116 (87.93%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPV 350
            ITRI+PS+++I AEEVMSLVTAQVAE SELNEVWKDIL+AEGDEIY+K++ LYMKEGEK+SF+ELSERA LR EVAIGY+K+ K  INPT K QPLSLE  D LIVISE EGEQP+
Sbjct:   63 ITRIRPSLSFIGAEEVMSLVTAQVAECSELNEVWKDILDAEGDEIYIKEVGLYMKEGEKISFTELSERAVLRREVAIGYVKDQKQHINPTNKLQPLSLEMTDSLIVISEFEGEQPI 178
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: A0A0D2S925_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G245700 PE=4 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.114e-55
Identity = 99/118 (83.90%), Postives = 107/118 (90.68%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITRIKPS+TYIAAEEVMSLVTAQVA+HSELNEVWKDILNAEGDEIYVKDI LYMKEGE  SFSEL+ERA  R EVAIGY+K+N  VINPTPK++PLSL   DLLIVISELEGEQP+VV
Sbjct:  822 ITRIKPSLTYIAAEEVMSLVTAQVAKHSELNEVWKDILNAEGDEIYVKDIGLYMKEGENPSFSELTERACWRQEVAIGYVKDNHKVINPTPKTEPLSLGMSDLLIVISELEGEQPIVV 939
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Match: K4CVV2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g083260.2 PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.849e-55
Identity = 93/111 (83.78%), Postives = 101/111 (90.99%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELE 335
            ITRI+PS+TYIA+EEVMSLVTAQVAE+SELNEVWKDILN +GDEIYVKDI LYMKEGEK SF+ELSERA LR EVAIGY+KNNK VINP PKS+PLSLE  D LIVISELE
Sbjct:  141 ITRIRPSLTYIASEEVMSLVTAQVAENSELNEVWKDILNVDGDEIYVKDIGLYMKEGEKPSFAELSERAHLRREVAIGYVKNNKKVINPIPKSEPLSLEQGDSLIVISELE 251
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLL1_ARATH (Putative ion channel POLLUX-like 1 OS=Arabidopsis thaliana GN=At5g02940 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.105e-53
Identity = 91/118 (77.12%), Postives = 105/118 (88.98%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            ITR+KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+AEGDEIYVKDI LYMKEGE  SF+ELSERA+LR EVAIGYIK  K +INP PK++P+SLE  D LIVISELEG+Q + +
Sbjct:  696 ITRLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDAEGDEIYVKDIELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKIINPVPKTEPVSLEMEDSLIVISELEGDQVITL 813
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLL2_ARATH (Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.085e-52
Identity = 90/118 (76.27%), Postives = 105/118 (88.98%), Query Frame = 3 
Query:    3 ITRIKPSVTYIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNNKTVINPTPKSQPLSLETIDLLIVISELEGEQPVVV 356
            IT +KPS+T+IAAEEVMSLVTAQVAE+SELNEVWKDIL+A+GDEIYVKD+ LYMKEGE  SF+ELSERA+LR EVAIGYIK  K +INP PK++PLSLE  D LIVISELEG+QP+ +
Sbjct:  700 ITGLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDVELYMKEGENPSFTELSERAWLRREVAIGYIKGGKKMINPVPKNEPLSLEMDDSLIVISELEGDQPITL 817
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: CASTO_LOTJA (Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-13
Identity = 37/104 (35.58%), Postives = 66/104 (63.46%), Query Frame = 3 
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N+V +++   EG+E++++  ++Y++EGE++SF E+  RA  R E+ IGY   N  + VINP  K+        D+ +VI+E E
Sbjct:  750 YVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQADIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPAKTGRRKWSLKDVFVVITEKE 853
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: CASTO_ORYSJ (Probable ion channel CASTOR OS=Oryza sativa subsp. japonica GN=Os03g0843600 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 5.717e-11
Identity = 33/104 (31.73%), Postives = 62/104 (59.62%), Query Frame = 3 
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N+V +++   +G+E+ ++  +LY++E E+L+F E+  R   R E+ IGY  +   + +INP  K         D+ +VI+E E
Sbjct:  790 YVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_ORYSJ (Probable ion channel POLLUX OS=Oryza sativa subsp. japonica GN=Os01g0870100 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 6.791e-11
Identity = 35/102 (34.31%), Postives = 61/102 (59.80%), Query Frame = 3 
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISE 329
            Y+ + E++S+  A VAE  ++N V +++   EG+E+ ++    Y+ E E+LSF ++  RA  R EV IGY    +++ +INP  KS+       D+ +VIS+
Sbjct:  840 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIRSAEFYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKSEIRKWSLDDVFVVISK 941
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: DMI1_MEDTR (Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.300e-10
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 3 
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N V +++   EG+E+ +K    Y+ + E+L F ++  R   R E+ IGY   N  + +INP+ KS P      D+ +V++  E
Sbjct:  779 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLANQERAIINPSEKSVPRKWSLDDVFVVLASGE 882
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_ARATH (Probable ion channel POLLUX OS=Arabidopsis thaliana GN=At5g49960 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.148e-9
Identity = 32/101 (31.68%), Postives = 58/101 (57.43%), Query Frame = 3 
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVIS 326
            Y+ + E++S+  A VAE  ++N V K++   +G+E+ ++    Y+ + E++ F ++  RA  R E+ IGY      + VINPT KS+       D+ +VI+
Sbjct:  721 YVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAEFYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIA 821
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: SYM8_PEA (Probable ion channel SYM8 OS=Pisum sativum GN=SYM8 PE=1 SV=3)

HSP 1 Score: 58.5362 bits (140), Expect = 4.016e-9
Identity = 32/104 (30.77%), Postives = 57/104 (54.81%), Query Frame = 3 
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGY--IKNNKTVINPTPKSQPLSLETIDLLIVISELE 335
            Y+ + E++S+  A VAE  ++N V +++   EG+E+ +K    Y+ + E+L F ++  R   R E+ IGY      + +INP+ KS        D+ +VI+  E
Sbjct:  791 YVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIKPAEFYLFDQEELCFYDIMIRGRTRKEIVIGYRLASQERALINPSEKSMTRKWSLDDVFVVIASGE 894
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Match: POLLU_LOTJA (Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 6.496e-8
Identity = 30/101 (29.70%), Postives = 56/101 (55.45%), Query Frame = 3 
Query:   30 YIAAEEVMSLVTAQVAEHSELNEVWKDILNAEGDEIYVKDINLYMKEGEKLSFSELSERAFLRGEVAIGYIKNN--KTVINPTPKSQPLSLETIDLLIVIS 326
            Y+ + E++S+  A VAE  ++N V +++   +G+E+ +K    Y+ + E+L F ++  R   R E+ IGY   N  + +INP+ K         D+ +VI+
Sbjct:  814 YVLSNELVSMALAMVAEDKQINRVLEELFAEQGNEMCIKPAEFYLFDQEELCFYDIMIRGRARQEIIIGYRLANQERAIINPSEKLVARKWSLGDVFVVIA 914
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2NXZ8_GOSRA6.149e-5783.90Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B0NDY6_GOSAR7.821e-5783.90Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A072VLS8_MEDTR4.859e-5682.20Ion channel pollux-like protein OS=Medicago trunca... [more]
A0A072VL92_MEDTR5.954e-5682.20Ion channel pollux-like protein OS=Medicago trunca... [more]
A0A068VJG9_COFCA6.591e-5681.36Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
A0A072VLT4_MEDTR6.834e-5682.20Ion channel pollux-like protein OS=Medicago trunca... [more]
A0A067L872_JATCU7.631e-5682.91Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
W4ZUS8_WHEAT3.925e-5576.72Uncharacterized protein OS=Triticum aestivum PE=4 ... [more]
A0A0D2S925_GOSRA4.114e-5583.90Uncharacterized protein OS=Gossypium raimondii GN=... [more]
K4CVV2_SOLLC4.849e-5583.78Uncharacterized protein OS=Solanum lycopersicum GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0009178 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
POLL1_ARATH9.105e-5377.12Putative ion channel POLLUX-like 1 OS=Arabidopsis ... [more]
POLL2_ARATH1.085e-5276.27Putative ion channel POLLUX-like 2 OS=Arabidopsis ... [more]
CASTO_LOTJA1.535e-1335.58Ion channel CASTOR OS=Lotus japonicus GN=CASTOR PE... [more]
CASTO_ORYSJ5.717e-1131.73Probable ion channel CASTOR OS=Oryza sativa subsp.... [more]
POLLU_ORYSJ6.791e-1134.31Probable ion channel POLLUX OS=Oryza sativa subsp.... [more]
DMI1_MEDTR4.300e-1031.73Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE... [more]
POLLU_ARATH1.148e-931.68Probable ion channel POLLUX OS=Arabidopsis thalian... [more]
SYM8_PEA4.016e-930.77Probable ion channel SYM8 OS=Pisum sativum GN=SYM8... [more]
POLLU_LOTJA6.496e-829.70Ion channel POLLUX OS=Lotus japonicus GN=POLLUX PE... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31563:SF2ION CHANNEL POLLUX-LIKE 1-RELATEDcoord: 1..98
NoneNo IPR availablePANTHERPTHR31563FAMILY NOT NAMEDcoord: 1..98

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0009178 ID=g.arboreum_cottongen_reftransV1_0009178; Name=g.arboreum_cottongen_reftransV1_0009178; organism=Gossypium arboreum; type=contig; length=501bp
AAATTACAAGAATCAAGCCATCCGTGACTTATATTGCGGCTGAGGAAGTG
ATGAGTCTTGTAACGGCTCAAGTCGCTGAACACAGTGAGCTGAATGAGGT
GTGGAAAGACATTTTAAATGCTGAAGGTGATGAAATATATGTAAAGGATA
TAAACCTATACATGAAAGAAGGGGAGAAGCTGTCGTTCTCAGAGCTATCC
GAAAGGGCATTTTTGCGAGGAGAAGTTGCAATAGGATATATCAAAAACAA
CAAAACTGTTATTAACCCAACTCCCAAGTCACAACCTCTGTCCCTAGAAA
CGATAGATTTACTAATTGTTATATCAGAGCTGGAAGGAGAGCAACCTGTT
GTTGTCTGAATACTAAATACATCATCCTTGCTTGTTTATCTTTTCAGTCT
CATAGTGAGGATTAGAGATTGAGAGAAACTTCTTGAATTTGCTGACTAGT
GAAATTTAGAATTGTTGTTTGAAGAAAATGTAGTATTTTATGATTGTAAA
T
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