g.arboreum_cottongen_reftransV1_0004586, g.arboreum_cottongen_reftransV1_0004586 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004586
Unique Nameg.arboreum_cottongen_reftransV1_0004586
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0004586:1..346 .
Chr12:5733973..5734318 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0B0PVE8_GOSAR (Glutamyl-tRNA (Gln) amidotransferase subunit A OS=Gossypium arboreum GN=F383_15562 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.566e-70
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MF+DA+CIGEK +NGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNGGD VYWETTI+SYL DYRPVEGIMIAHSGRSV+TLFRFGE AM
Sbjct:  277 MFSDAKCIGEKTINGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDTVYWETTINSYLHDYRPVEGIMIAHSGRSVITLFRFGEAAM 390
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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: I1LEG8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.634e-70
Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADA+CIGEKN+NGEDCFILKLCTDP+TLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTI+S+L DY+PVEGIMIAHSG SVVTLFRFGE+A+
Sbjct:  267 MFADAKCIGEKNINGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTINSFLSDYKPVEGIMIAHSGHSVVTLFRFGEMAL 380
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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: M1CFP3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025854 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.736e-70
Identity = 103/114 (90.35%), Postives = 110/114 (96.49%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFA+ARCIGEK +NGEDCFILKLC DP TLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNG +AVYWETTI+S+LDDYRPVEGIMIAHSGRSVVTLFRFGE+AM
Sbjct:  279 MFANARCIGEKKINGEDCFILKLCADPHTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGAEAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAM 392
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: K4B2V2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g107350.2 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.926e-70
Identity = 103/114 (90.35%), Postives = 109/114 (95.61%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MF +ARCIGEK +NGEDCFILKLC DP TLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNG DAVYWETTI+S+LDDYRPVEGIMIAHSGRSVVTLFRFGE+AM
Sbjct:  279 MFTNARCIGEKKINGEDCFILKLCADPHTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGADAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAM 392
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: M5W5V1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004459mg PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 6.292e-70
Identity = 102/114 (89.47%), Postives = 111/114 (97.37%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MF DARCIGE+ +NGEDCFILKLC DPQTLKARSEGPAEIIRHVLFGYFSQ+TGLLVH+EDSHLTRIQSNGGDA+YWETTI+S+LDDYRPVEGIMIAHSGRSVVTLFRFG++AM
Sbjct:  310 MFTDARCIGERKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQRTGLLVHMEDSHLTRIQSNGGDAIYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGDMAM 423
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0PVE8_GOSAR1.566e-7091.23Glutamyl-tRNA (Gln) amidotransferase subunit A OS=... [more]
I1LEG8_SOYBN1.634e-7091.23Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M1CFP3_SOLTU4.736e-7090.35Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
K4B2V2_SOLLC5.926e-7090.35Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M5W5V1_PRUPE6.292e-7089.47Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006873Protein of unknown function DUF620PFAMPF04788DUF620coord: 1..113
e-value: 3.9E-54
score: 183.5
NoneNo IPR availablePANTHERPTHR31300FAMILY NOT NAMEDcoord: 1..114
NoneNo IPR availablePANTHERPTHR31300:SF1SUBFAMILY NOT NAMEDcoord: 1..114

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004586 ID=g.arboreum_cottongen_reftransV1_0004586; Name=g.arboreum_cottongen_reftransV1_0004586; organism=Gossypium arboreum; type=contig; length=346bp
GTATGTTTGCTGATGCAAGATGCATAGGTGAAAAAAATGTTAACGGTGAA
GATTGCTTCATCCTCAAGTTATGTACCGATCCGCAAACGCTTAAGGCGAG
GAGTGAAGGCCCGGCGGAGATCATTAGGCATGTTTTATTCGGTTACTTTA
GTCAGAAGACTGGACTTCTTGTTCACATCGAAGACTCACATCTGACTCGT
ATTCAATCTAACGGCGGTGATGCTGTTTATTGGGAAACCACAATCGATTC
ATATCTCGATGATTACCGACCCGTTGAAGGTATCATGATAGCACATTCCG
GTCGTTCTGTTGTTACACTTTTCAGGTTCGGGGAAGTCGCAATGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006873DUF620