g.arboreum_cottongen_reftransV1_0004586, g.arboreum_cottongen_reftransV1_0004586 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0004586
Unique Nameg.arboreum_cottongen_reftransV1_0004586
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0004586:1..346 .
Chr12:5733973..5734318 -
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A072VRH6_MEDTR (Lipase OS=Medicago truncatula GN=MTR_1g106875 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.529e-71
Identity = 107/114 (93.86%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEKN+NGEDCFILK CTDP+TLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTI+S+LDDYRPVEGIMIAHSG SVVTLFRFGE+AM
Sbjct:  274 MFADARCIGEKNINGEDCFILKHCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGHSVVTLFRFGEMAM 387
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0A0KT77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001510 PE=4 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.791e-71
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLC DPQTLK+RSEGPAEIIRHVLFGYFSQKTGLLV++EDSHLTRIQSNGGDAVYWETTI+S+LDDYRPVEGIMIAHSGRSVVTLFRFGE+AM
Sbjct:  278 MFADARCIGEKKINGEDCFILKLCADPQTLKSRSEGPAEIIRHVLFGYFSQKTGLLVYMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGEMAM 391
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: I1NG05_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.743e-71
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADA+CIGEKN+NGEDCFILKLCTDP+TLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTI+S+L DY+PVEGIMIAHSG SVVTLFRFGE+AM
Sbjct:  268 MFADAKCIGEKNINGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTINSFLSDYKPVEGIMIAHSGHSVVTLFRFGEMAM 381
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: W9RXT3_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011503 PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.141e-71
Identity = 105/114 (92.11%), Postives = 111/114 (97.37%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MF+DARCIGEK +NGEDCFILKLC DPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTI+S+L+DYRPVEGIMIAHSGRSVV LFRFGE+AM
Sbjct:  277 MFSDARCIGEKKINGEDCFILKLCADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTINSFLEDYRPVEGIMIAHSGRSVVNLFRFGEMAM 390
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: B9GHV0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30470g PE=4 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.293e-70
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADA+CIGEKN+NGEDCFILKL  DPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNGGDAVYWETTI+S+LDDYRPVEGIMIAHSGR+VVTL+RFGEVAM
Sbjct:  279 MFADAKCIGEKNINGEDCFILKLFADPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRTVVTLYRFGEVAM 392
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0B0MTX9_GOSAR (Glutamyl-tRNA (Gln) amidotransferase subunit A OS=Gossypium arboreum GN=F383_24390 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.378e-70
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLV +EDSHLTRIQSNGGDAVYWETTI+S+L+DYR VEGIMIAHSGRSVVTLFRFGEVAM
Sbjct:  281 MFADARCIGEKKINGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVQMEDSHLTRIQSNGGDAVYWETTINSFLEDYRSVEGIMIAHSGRSVVTLFRFGEVAM 394
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: M1BXY9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021537 PE=4 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.405e-70
Identity = 102/114 (89.47%), Postives = 108/114 (94.74%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFA A+C GEK +NGEDCFILKLC DP TLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQ+NGGDAVYWETTI+S+LDDYRPVEGIMIAHSGRSVVTLFRFGE AM
Sbjct:  130 MFASAKCTGEKKINGEDCFILKLCADPHTLKARSEGPAEIIRHVLFGYFSQKTGLLVHLEDSHLTRIQTNGGDAVYWETTINSFLDDYRPVEGIMIAHSGRSVVTLFRFGETAM 243
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0D2PMH5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G021300 PE=4 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.438e-70
Identity = 106/114 (92.98%), Postives = 111/114 (97.37%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADARCIGEK +NGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLV +EDSHLTRIQSNGGDAVYWETTI+S+L+DYR VEGIMIAHSGRSVVTLFRFGEVAM
Sbjct:  281 MFADARCIGEKKINGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVQMEDSHLTRIQSNGGDAVYWETTINSFLEDYRSVEGIMIAHSGRSVVTLFRFGEVAM 394
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0B2PGY4_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_021333 PE=4 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.439e-70
Identity = 104/114 (91.23%), Postives = 112/114 (98.25%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MFADA+CIGEKN+NGEDCFILKLCTDP+TLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTI+S+L DY+PVEGIMIAHSG SVVTLFRFGE+A+
Sbjct:  263 MFADAKCIGEKNINGEDCFILKLCTDPETLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTINSFLSDYKPVEGIMIAHSGHSVVTLFRFGEMAL 376
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Match: A0A0D2V9C5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048800 PE=4 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.485e-70
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 3 
Query:    3 MFADARCIGEKNVNGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHIEDSHLTRIQSNGGDAVYWETTIDSYLDDYRPVEGIMIAHSGRSVVTLFRFGEVAM 344
            MF+DA+CIGEK +NGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVH+EDSHLTRIQSNGGD VYWETTI+SYL DYRPVEGIMIAHSGRSV+TLFRFGE AM
Sbjct:  277 MFSDAKCIGEKTINGEDCFILKLCTDPQTLKARSEGPAEIIRHVLFGYFSQKTGLLVHMEDSHLTRIQSNGGDTVYWETTINSYLHDYRPVEGIMIAHSGRSVITLFRFGEAAM 390
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A072VRH6_MEDTR2.529e-7193.86Lipase OS=Medicago truncatula GN=MTR_1g106875 PE=4... [more]
A0A0A0KT77_CUCSA2.791e-7192.11Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
I1NG05_SOYBN5.743e-7192.11Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
W9RXT3_9ROSA6.141e-7192.11Uncharacterized protein OS=Morus notabilis GN=L484... [more]
B9GHV0_POPTR1.293e-7092.11Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A0B0MTX9_GOSAR1.378e-7092.98Glutamyl-tRNA (Gln) amidotransferase subunit A OS=... [more]
M1BXY9_SOLTU1.405e-7089.47Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0D2PMH5_GOSRA1.438e-7092.98Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0B2PGY4_GLYSO1.439e-7091.23Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
A0A0D2V9C5_GOSRA1.485e-7091.23Uncharacterized protein OS=Gossypium raimondii GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0004586 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006873Protein of unknown function DUF620PFAMPF04788DUF620coord: 1..113
e-value: 3.9E-54
score: 183.5
NoneNo IPR availablePANTHERPTHR31300FAMILY NOT NAMEDcoord: 1..114
NoneNo IPR availablePANTHERPTHR31300:SF1SUBFAMILY NOT NAMEDcoord: 1..114

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0004586 ID=g.arboreum_cottongen_reftransV1_0004586; Name=g.arboreum_cottongen_reftransV1_0004586; organism=Gossypium arboreum; type=contig; length=346bp
GTATGTTTGCTGATGCAAGATGCATAGGTGAAAAAAATGTTAACGGTGAA
GATTGCTTCATCCTCAAGTTATGTACCGATCCGCAAACGCTTAAGGCGAG
GAGTGAAGGCCCGGCGGAGATCATTAGGCATGTTTTATTCGGTTACTTTA
GTCAGAAGACTGGACTTCTTGTTCACATCGAAGACTCACATCTGACTCGT
ATTCAATCTAACGGCGGTGATGCTGTTTATTGGGAAACCACAATCGATTC
ATATCTCGATGATTACCGACCCGTTGAAGGTATCATGATAGCACATTCCG
GTCGTTCTGTTGTTACACTTTTCAGGTTCGGGGAAGTCGCAATGAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006873DUF620