g.arboreum_cottongen_reftransV1_0008189, g.arboreum_cottongen_reftransV1_0008189 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: M1B6M3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014784 PE=4 SV=1) HSP 1 Score: 462.611 bits (1189), Expect = 5.153e-154 Identity = 331/498 (66.47%), Postives = 407/498 (81.73%), Query Frame = -1 Query: 140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633 MADEEER LE QLE+QL EQ+++L +L +AL+SDP +P++L+V EELV+ IK+TEEGLL+LKRARLL E D++L+ + E ++ +E EPL D Y VGSKCRFR +DGRWY+G +V L GS AK+ F TPTSENM++C+FFLQQRCRFG++CRLSHG+D+P+SSLKKY P W+ S+ GS IWA DSK G+W++AEL SW+++L G +VF DDGSSA LG E + LSE+A+ +D+EES SEESDSSDYEE+SP+GLGF+EST+LQ+G+QTETT+FAKWENHTRG+AS+MMANMGYREGMGLGASGQGM+NPI VKVLPPK SLDHA++ ++ E ++KK KKRSRGGKRKREKKFA AARAAKE EESRPDVFSLIN QLA+ E +N + +++ K GEEKK DR+ALVAYDDE+K L+++ KLEEMV RNRNEK VYEAAMRKL ETRKA+A AEA HASASNAV SKEKEK+WLKF Sbjct: 1 MADEEERALEEQLEIQLDEQKDALHSLTEALSSDPSDPELLSVREELVQSIKDTEEGLLHLKRARLLLEVDASLHGFKEQTAEVEVEPLDPTE-IEAEPLV-DEEYAVGSKCRFRNNDGRWYNGLIVGLEGSHFAKVCFRTPTSENMVMCQFFLQQRCRFGSSCRLSHGIDIPISSLKKYIPMKWDSSLAGSCIWARSDSKAGLWKKAELGSWDEKLNLGHIVFCDDGSSATLGAENIELSEHAEATDEEESYSGSEESDSSDYEEDSPEGLGFVESTSLQRGVQTETTLFAKWENHTRGIASRMMANMGYREGMGLGASGQGMVNPIPVKVLPPKQSLDHAIK-NQKAEHEDKKHKKRSRGGKRKREKKFAAAARAAKEVEESRPDVFSLINTQLAVHEETMNNSTGNRRRSKAKGEEKKEDRRALVAYDDEIKGLRIQAQKLEEMVQRNRNEKPVYEAAMRKLNETRKAIATAEAAHASASNAVHSKEKEKRWLKF 495
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: V7BN85_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G047900g PE=4 SV=1) HSP 1 Score: 459.529 bits (1181), Expect = 6.927e-153 Identity = 333/500 (66.60%), Postives = 404/500 (80.80%), Query Frame = -1 Query: 140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEP-LEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDED-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633 M EEERVLENQLELQL+EQR+SLSA+D AL SDP N ++LAVHEELV+ IK+ EEGL +LKRARLL+EAD+ L+ +N + + D +VEP L E++ + VGSKCRFR+ +GRWY+GQVV L+ S AK+SFLTPTSENML+CKFFLQQRCRFG++CRLSHGVDV LS+LKK+ PT+WE S+VGSSIWAV + G WREAELESW+++ G+VVFRDDGS+ +LG E + LSE+A++SD E + S E+E +GLGFL+ T LQ+G+QTET FA WENHTRG+AS+MMANMGYREGMGLG +GQGML+PI VK+LPPK SLD+ALE+H+ +E ++ KKRSRGGKRKREKKFAEA RAAKEEEES DVF+LINNQL M SEA GGS KKQQ KG E KKVDR+ALVAY++EVK+LK+RV KLE+ V+ N+ EKAVYEAAMRKL +TR+ALA+AEAVH SASNAVVSKEKEK+WLKF Sbjct: 1 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNLELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAILHNTN---IFAEDEKVEFLDPTDVEPELLEEKCHSVGSKCRFRHINGRWYNGQVVQLDNS-VAKVSFLTPTSENMLMCKFFLQQRCRFGSSCRLSHGVDVQLSALKKFVPTIWEQSLVGSSIWAVSTANAGTWREAELESWDEKAEVGQVVFRDDGSTVKLGAEDMALSEHAEVSDSESDSSLQQSESSDCEEDEESQGLGFLDCTNLQRGVQTETAKFATWENHTRGIASRMMANMGYREGMGLGVTGQGMLDPIPVKILPPKQSLDYALESHKREEKPDKECKKKRSRGGKRKREKKFAEANRAAKEEEESASDVFALINNQLTMHSEAFGGGSMKKQQSKGPEEGKKVDRRALVAYEEEVKDLKMRVEKLEQFVNANKKEKAVYEAAMRKLNKTREALADAEAVHVSASNAVVSKEKEKRWLKF 496
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: M0SKB8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 457.988 bits (1177), Expect = 4.098e-152 Identity = 300/481 (62.37%), Postives = 368/481 (76.51%), Query Frame = -1 Query: 140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLE---------EDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSP-------KGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEA-VNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531 P N ++L+VHEEL+ IK+ EEGLLNLKR+RLLREAD + S Q A S DV+VEPL+ E + VGSKCRFRY+DGRWY+GQ+V L SA+ISFLTPTSE M +CKFFLQQRCRFG NCRLSHG+ VP+SSLK Y PT+W+ S+VGSSIWA + GIWR+AELESW+DEL G+VVF+DDGSS +L +AL++SEYA++SD EE++ S EEE +GLGFLE+T LQKG+QTETT+FAKWE+HTRG+ASKMMA+MGYREGMGLGASGQG+L+P+ VKVLPPK SLDHA+ +ENDE+ +GK+RSRGGKRKREK++A+AARA+K EEE PDVF+ INNQLA Q A V+ +KK G ++ DR++LVAYDDEVKEL+ ++ KL EMV+RNR +KA+YEAA RKL ETRKALA+ EA HA+ASNAVV+KEKEKKWLKF Sbjct: 38 PSNLELLSVHEELILAIKDAEEGLLNLKRSRLLREAD--MIFSGQEAESI-------SQDVKVEPLDLRQDKSELSESETNSVGSKCRFRYTDGRWYNGQIVELGSPTSARISFLTPTSEGMTMCKFFLQQRCRFGNNCRLSHGLIVPISSLKNYIPTVWKQSLVGSSIWAAAGNYSGIWRKAELESWDDELMVGQVVFQDDGSSVKLSSDALSISEYAEMSDGEENDDDFSSDGSESSEEEEDTDSGIGHQGLGFLEATILQKGVQTETTVFAKWEHHTRGIASKMMASMGYREGMGLGASGQGILDPVVVKVLPPKQSLDHAV-ANENDENSVGRGKRRSRGGKRKREKRYADAARASKAEEEKAPDVFNFINNQLAGQDVAYVSSNRSKKGTGNGEASARREDRRSLVAYDDEVKELRNKIEKLAEMVNRNRKDKAIYEAATRKLNETRKALADVEAAHAAASNAVVNKEKEKKWLKF 508
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A022QRR0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005102mg PE=4 SV=1) HSP 1 Score: 457.218 bits (1175), Expect = 6.948e-152 Identity = 291/466 (62.45%), Postives = 359/466 (77.04%), Query Frame = -1 Query: 140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSE-AVN-XXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531 P N ++L+VH EL++ IK+ EEGL LK++RLLREADS L S + +VK E L+ D E EPL D Y VGSKCRFR++DGRWY+G VV L GS SAKI+FL PTSE+ML+CKFFLQQRCRFG NCRL HG+DVPLSSLK+Y PT WE S+VGSSIWA+PD + GIWREAEL SW+++LR G+VVFR DG+S +LG E++TLSEYA++++++++ SS+ + S EE+ +GLGFLEST Q+G+QTET IFA WENHTRG+ASKMMANMGYREGMGLG +GQG+LNPISVKVLPPK SLD A++ N E+ K+ G +++ K AA A EEE DVFSLIN +LAM + ++N GGS KKQQ KG+ EEKK DR AL+AY++EVK L+ + KLEEMV+RNR EKAVY+AAMRKL ETRKALA+AE HAS S AV K+KEKKWLKF Sbjct: 36 PSNAELLSVHVELIQSIKDAEEGLFQLKKSRLLREADSILEGS--LSSNDVKVELLDPRDNEAEPLV-DEEYSVGSKCRFRHTDGRWYNGLVVGLEGSESAKITFLNPTSESMLMCKFFLQQRCRFGNNCRLLHGIDVPLSSLKEYIPTTWEQSLVGSSIWALPDREAGIWREAELASWDEKLRQGEVVFRYDGTSLKLGTESITLSEYAEVNEEDDTCTSSDSNFSDSEEEDFSQGLGFLESTNSQRGVQTETAIFATWENHTRGIASKMMANMGYREGMGLGVTGQGILNPISVKVLPPKQSLDRAVKNQGNQEN-NVARVKKRTRGGKRKRDKKLAAAAKAAEEEGESKDVFSLINTRLAMHGKGSINGGGSVKKQQNKGNVEEKKEDRWALLAYEEEVKTLRFQCDKLEEMVNRNRKEKAVYDAAMRKLNETRKALADAEVAHASTSKAVARKDKEKKWLKF 497
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: V4NJM8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000137mg PE=4 SV=1) HSP 1 Score: 442.58 bits (1137), Expect = 4.119e-146 Identity = 291/476 (61.13%), Postives = 357/476 (75.00%), Query Frame = -1 Query: 140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXS----------PKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHEND-EDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAM-QSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531 P NP++L+VHEEL+ IK+ EEGLL+LKRARLL+EAD L+ + + ++++E E EE + GSKCRFR++DGRWY+G+++ GS SAKISFLTPTSE+M++CKFF+QQRCRFG++CR SHG+DVPLSSLK Y PT W+ SMVGS IWAV SK IWR AELESW+DEL+ G VVF+ DGSSA+LG +A+ LSEYAQ++DD+ E E + SD E P+G+GFLEST ++G+QT+T IFAKWENHTRG+ASKMMA+MGYREGMGLGASGQG+++PI VKVLPPK SLDHALE +N E EK KKRSRGGKRKREKKFAEAARAAK+EEES+ D+FSLINNQL E VN ++ K + VDRKALVAY++EVKELKL+ +KLE MV RN+N++ V +AA R+L E RKALA A ASAS V SKEKEKKWLKF Sbjct: 35 PSNPELLSVHEELLSAIKDAEEGLLHLKRARLLQEADIVLHGLTHNVGIKAENVDPLANELEPEKTEEKKDSD-GSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPTSESMMMCKFFMQQRCRFGSSCRSSHGLDVPLSSLKNYDPTEWKQSMVGSKIWAVSGSKYDIWRVAELESWDDELKVGGVVFKGDGSSAKLGSDAIALSEYAQMTDDDGEEDEQYEEEGSDSGSEESGSSDCDEEFPEGIGFLESTNQRRGVQTDTAIFAKWENHTRGIASKMMASMGYREGMGLGASGQGIVDPILVKVLPPKRSLDHALEHIKNGVEKSEKPKKKRSRGGKRKREKKFAEAARAAKQEEESKQDLFSLINNQLCTSHHEKVN----GRESVKKRQNKGPVDRKALVAYEEEVKELKLQAMKLEAMVKRNKNDQIVSDAATRRLNEVRKALACTMAAQASASKDVESKEKEKKWLKF 505
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROVI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.075e-10 Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = -1 Query: 593 WENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 754 WE +TRG+ SK+MA+MGY G GLG+ G+G++ P+S ++LP SLD +E E Sbjct: 305 WEQYTRGIGSKLMASMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 358
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROSI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila simulans GN=GD23643 PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.498e-9 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1 Query: 593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772 T WE TRG+ SK+M MGY G GLG+ G+G++ P+S ++LP SLD +E E Sbjct: 302 TDRLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 361
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROSE (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila sechellia GN=GM17832 PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.538e-9 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1 Query: 593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772 T WE TRG+ SK+M MGY G GLG+ G+G++ P+S ++LP SLD +E E Sbjct: 302 TDRLGAWEEFTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDACMELRE 361
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROYA (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila yakuba GN=GE18884 PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.552e-9 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1 Query: 593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772 T WE TRG+ SK+M MGY G GLG+ G+G++ P+S ++LP SLD +E E Sbjct: 302 TERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 361
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROME (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila melanogaster GN=CG4709 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.552e-9 Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1 Query: 593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772 T WE TRG+ SK+M MGY G GLG+ G+G++ P+S ++LP SLD +E E Sbjct: 302 TERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 361 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pages
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008189 ID=g.arboreum_cottongen_reftransV1_0008189; Name=g.arboreum_cottongen_reftransV1_0008189; organism=Gossypium arboreum; type=contig; length=1642bpback to top |