g.arboreum_cottongen_reftransV1_0008189, g.arboreum_cottongen_reftransV1_0008189 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008189
Unique Nameg.arboreum_cottongen_reftransV1_0008189
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1642
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr4chromosomeg.arboreum_cottongen_reftransV1_0008189:1..1642 .
Chr4:33536213..33539100 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: M1B6M3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014784 PE=4 SV=1)

HSP 1 Score: 462.611 bits (1189), Expect = 5.153e-154
Identity = 331/498 (66.47%), Postives = 407/498 (81.73%), Query Frame = -1
Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            MADEEER LE QLE+QL EQ+++L +L +AL+SDP +P++L+V EELV+ IK+TEEGLL+LKRARLL E D++L+   +   E        ++ +E EPL  D  Y VGSKCRFR +DGRWY+G +V L GS  AK+ F TPTSENM++C+FFLQQRCRFG++CRLSHG+D+P+SSLKKY P  W+ S+ GS IWA  DSK G+W++AEL SW+++L  G +VF DDGSSA LG E + LSE+A+ +D+EES   SEESDSSDYEE+SP+GLGF+EST+LQ+G+QTETT+FAKWENHTRG+AS+MMANMGYREGMGLGASGQGM+NPI VKVLPPK SLDHA++ ++  E ++KK KKRSRGGKRKREKKFA AARAAKE EESRPDVFSLIN QLA+  E +N  +  +++ K  GEEKK DR+ALVAYDDE+K L+++  KLEEMV RNRNEK VYEAAMRKL ETRKA+A AEA HASASNAV SKEKEK+WLKF
Sbjct:    1 MADEEERALEEQLEIQLDEQKDALHSLTEALSSDPSDPELLSVREELVQSIKDTEEGLLHLKRARLLLEVDASLHGFKEQTAEVEVEPLDPTE-IEAEPLV-DEEYAVGSKCRFRNNDGRWYNGLIVGLEGSHFAKVCFRTPTSENMVMCQFFLQQRCRFGSSCRLSHGIDIPISSLKKYIPMKWDSSLAGSCIWARSDSKAGLWKKAELGSWDEKLNLGHIVFCDDGSSATLGAENIELSEHAEATDEEESYSGSEESDSSDYEEDSPEGLGFVESTSLQRGVQTETTLFAKWENHTRGIASRMMANMGYREGMGLGASGQGMVNPIPVKVLPPKQSLDHAIK-NQKAEHEDKKHKKRSRGGKRKREKKFAAAARAAKEVEESRPDVFSLINTQLAVHEETMNNSTGNRRRSKAKGEEKKEDRRALVAYDDEIKGLRIQAQKLEEMVQRNRNEKPVYEAAMRKLNETRKAIATAEAAHASASNAVHSKEKEKRWLKF 495          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: V7BN85_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G047900g PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 6.927e-153
Identity = 333/500 (66.60%), Postives = 404/500 (80.80%), Query Frame = -1
Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEP-LEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDED-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            M  EEERVLENQLELQL+EQR+SLSA+D AL SDP N ++LAVHEELV+ IK+ EEGL +LKRARLL+EAD+ L+ +N   +     +    D  +VEP L E++ + VGSKCRFR+ +GRWY+GQVV L+ S  AK+SFLTPTSENML+CKFFLQQRCRFG++CRLSHGVDV LS+LKK+ PT+WE S+VGSSIWAV  +  G WREAELESW+++   G+VVFRDDGS+ +LG E + LSE+A++SD E      +   S   E+E  +GLGFL+ T LQ+G+QTET  FA WENHTRG+AS+MMANMGYREGMGLG +GQGML+PI VK+LPPK SLD+ALE+H+ +E   ++  KKRSRGGKRKREKKFAEA RAAKEEEES  DVF+LINNQL M SEA  GGS KKQQ KG  E KKVDR+ALVAY++EVK+LK+RV KLE+ V+ N+ EKAVYEAAMRKL +TR+ALA+AEAVH SASNAVVSKEKEK+WLKF
Sbjct:    1 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNLELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAILHNTN---IFAEDEKVEFLDPTDVEPELLEEKCHSVGSKCRFRHINGRWYNGQVVQLDNS-VAKVSFLTPTSENMLMCKFFLQQRCRFGSSCRLSHGVDVQLSALKKFVPTIWEQSLVGSSIWAVSTANAGTWREAELESWDEKAEVGQVVFRDDGSTVKLGAEDMALSEHAEVSDSESDSSLQQSESSDCEEDEESQGLGFLDCTNLQRGVQTETAKFATWENHTRGIASRMMANMGYREGMGLGVTGQGMLDPIPVKILPPKQSLDYALESHKREEKPDKECKKKRSRGGKRKREKKFAEANRAAKEEEESASDVFALINNQLTMHSEAFGGGSMKKQQSKGPEEGKKVDRRALVAYEEEVKDLKMRVEKLEQFVNANKKEKAVYEAAMRKLNKTREALADAEAVHVSASNAVVSKEKEKRWLKF 496          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: M0SKB8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 457.988 bits (1177), Expect = 4.098e-152
Identity = 300/481 (62.37%), Postives = 368/481 (76.51%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLE---------EDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSP-------KGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEA-VNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P N ++L+VHEEL+  IK+ EEGLLNLKR+RLLREAD  +  S Q A          S DV+VEPL+         E  +  VGSKCRFRY+DGRWY+GQ+V L    SA+ISFLTPTSE M +CKFFLQQRCRFG NCRLSHG+ VP+SSLK Y PT+W+ S+VGSSIWA   +  GIWR+AELESW+DEL  G+VVF+DDGSS +L  +AL++SEYA++SD EE++       S   EEE         +GLGFLE+T LQKG+QTETT+FAKWE+HTRG+ASKMMA+MGYREGMGLGASGQG+L+P+ VKVLPPK SLDHA+  +ENDE+   +GK+RSRGGKRKREK++A+AARA+K EEE  PDVF+ INNQLA Q  A V+   +KK    G    ++ DR++LVAYDDEVKEL+ ++ KL EMV+RNR +KA+YEAA RKL ETRKALA+ EA HA+ASNAVV+KEKEKKWLKF
Sbjct:   38 PSNLELLSVHEELILAIKDAEEGLLNLKRSRLLREAD--MIFSGQEAESI-------SQDVKVEPLDLRQDKSELSESETNSVGSKCRFRYTDGRWYNGQIVELGSPTSARISFLTPTSEGMTMCKFFLQQRCRFGNNCRLSHGLIVPISSLKNYIPTVWKQSLVGSSIWAAAGNYSGIWRKAELESWDDELMVGQVVFQDDGSSVKLSSDALSISEYAEMSDGEENDDDFSSDGSESSEEEEDTDSGIGHQGLGFLEATILQKGVQTETTVFAKWEHHTRGIASKMMASMGYREGMGLGASGQGILDPVVVKVLPPKQSLDHAV-ANENDENSVGRGKRRSRGGKRKREKRYADAARASKAEEEKAPDVFNFINNQLAGQDVAYVSSNRSKKGTGNGEASARREDRRSLVAYDDEVKELRNKIEKLAEMVNRNRKDKAIYEAATRKLNETRKALADVEAAHAAASNAVVNKEKEKKWLKF 508          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A022QRR0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005102mg PE=4 SV=1)

HSP 1 Score: 457.218 bits (1175), Expect = 6.948e-152
Identity = 291/466 (62.45%), Postives = 359/466 (77.04%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSE-AVN-XXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P N ++L+VH EL++ IK+ EEGL  LK++RLLREADS L  S   +  +VK E L+  D E EPL  D  Y VGSKCRFR++DGRWY+G VV L GS SAKI+FL PTSE+ML+CKFFLQQRCRFG NCRL HG+DVPLSSLK+Y PT WE S+VGSSIWA+PD + GIWREAEL SW+++LR G+VVFR DG+S +LG E++TLSEYA++++++++  SS+ + S   EE+  +GLGFLEST  Q+G+QTET IFA WENHTRG+ASKMMANMGYREGMGLG +GQG+LNPISVKVLPPK SLD A++   N E+      K+   G +++  K   AA  A EEE    DVFSLIN +LAM  + ++N GGS KKQQ KG+ EEKK DR AL+AY++EVK L+ +  KLEEMV+RNR EKAVY+AAMRKL ETRKALA+AE  HAS S AV  K+KEKKWLKF
Sbjct:   36 PSNAELLSVHVELIQSIKDAEEGLFQLKKSRLLREADSILEGS--LSSNDVKVELLDPRDNEAEPLV-DEEYSVGSKCRFRHTDGRWYNGLVVGLEGSESAKITFLNPTSESMLMCKFFLQQRCRFGNNCRLLHGIDVPLSSLKEYIPTTWEQSLVGSSIWALPDREAGIWREAELASWDEKLRQGEVVFRYDGTSLKLGTESITLSEYAEVNEEDDTCTSSDSNFSDSEEEDFSQGLGFLESTNSQRGVQTETAIFATWENHTRGIASKMMANMGYREGMGLGVTGQGILNPISVKVLPPKQSLDRAVKNQGNQEN-NVARVKKRTRGGKRKRDKKLAAAAKAAEEEGESKDVFSLINTRLAMHGKGSINGGGSVKKQQNKGNVEEKKEDRWALLAYEEEVKTLRFQCDKLEEMVNRNRKEKAVYDAAMRKLNETRKALADAEVAHASTSKAVARKDKEKKWLKF 497          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: V4NJM8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000137mg PE=4 SV=1)

HSP 1 Score: 442.58 bits (1137), Expect = 4.119e-146
Identity = 291/476 (61.13%), Postives = 357/476 (75.00%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXS----------PKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHEND-EDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAM-QSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P NP++L+VHEEL+  IK+ EEGLL+LKRARLL+EAD  L+        + +     ++++E E  EE +    GSKCRFR++DGRWY+G+++   GS SAKISFLTPTSE+M++CKFF+QQRCRFG++CR SHG+DVPLSSLK Y PT W+ SMVGS IWAV  SK  IWR AELESW+DEL+ G VVF+ DGSSA+LG +A+ LSEYAQ++DD+  E    E + SD   E           P+G+GFLEST  ++G+QT+T IFAKWENHTRG+ASKMMA+MGYREGMGLGASGQG+++PI VKVLPPK SLDHALE  +N  E  EK  KKRSRGGKRKREKKFAEAARAAK+EEES+ D+FSLINNQL     E VN     ++  K    +  VDRKALVAY++EVKELKL+ +KLE MV RN+N++ V +AA R+L E RKALA   A  ASAS  V SKEKEKKWLKF
Sbjct:   35 PSNPELLSVHEELLSAIKDAEEGLLHLKRARLLQEADIVLHGLTHNVGIKAENVDPLANELEPEKTEEKKDSD-GSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPTSESMMMCKFFMQQRCRFGSSCRSSHGLDVPLSSLKNYDPTEWKQSMVGSKIWAVSGSKYDIWRVAELESWDDELKVGGVVFKGDGSSAKLGSDAIALSEYAQMTDDDGEEDEQYEEEGSDSGSEESGSSDCDEEFPEGIGFLESTNQRRGVQTDTAIFAKWENHTRGIASKMMASMGYREGMGLGASGQGIVDPILVKVLPPKRSLDHALEHIKNGVEKSEKPKKKRSRGGKRKREKKFAEAARAAKQEEESKQDLFSLINNQLCTSHHEKVN----GRESVKKRQNKGPVDRKALVAYEEEVKELKLQAMKLEAMVKRNKNDQIVSDAATRRLNEVRKALACTMAAQASASKDVESKEKEKKWLKF 505          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROVI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.075e-10
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = -1
Query:  593 WENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 754
            WE +TRG+ SK+MA+MGY  G GLG+ G+G++ P+S ++LP   SLD  +E  E
Sbjct:  305 WEQYTRGIGSKLMASMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 358          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROSI (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila simulans GN=GD23643 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.498e-9
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772
            T     WE  TRG+ SK+M  MGY  G GLG+ G+G++ P+S ++LP   SLD  +E  E
Sbjct:  302 TDRLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 361          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROSE (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila sechellia GN=GM17832 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.538e-9
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772
            T     WE  TRG+ SK+M  MGY  G GLG+ G+G++ P+S ++LP   SLD  +E  E
Sbjct:  302 TDRLGAWEEFTRGIGSKLMEKMGYIHGTGLGSEGRGIVTPVSAQILPQGRSLDACMELRE 361          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROYA (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila yakuba GN=GE18884 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.552e-9
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772
            T     WE  TRG+ SK+M  MGY  G GLG+ G+G++ P+S ++LP   SLD  +E  E
Sbjct:  302 TERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 361          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROME (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila melanogaster GN=CG4709 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.552e-9
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = -1
Query:  593 TTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 772
            T     WE  TRG+ SK+M  MGY  G GLG+ G+G++ P+S ++LP   SLD  +E  E
Sbjct:  302 TERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQGRSLDACMELRE 361          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M1B6M3_SOLTU5.153e-15466.47Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
V7BN85_PHAVU6.927e-15366.60Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
M0SKB8_MUSAM4.098e-15262.37Uncharacterized protein OS=Musa acuminata subsp. m... [more]
A0A022QRR0_ERYGU6.948e-15262.45Uncharacterized protein OS=Erythranthe guttata GN=... [more]
V4NJM8_EUTSA4.119e-14661.13Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ZGPAT_DROVI1.075e-1050.00Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROSI1.498e-945.00Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROSE1.538e-945.00Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROYA1.552e-945.00Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROME1.552e-945.00Zinc finger CCCH-type with G patch domain-containi... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 247..267
NoneNo IPR availableCOILSCoilCoilcoord: 427..454
NoneNo IPR availableCOILSCoilCoilcoord: 1..30
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableCOILSCoilCoilcoord: 458..478
NoneNo IPR availableGENE3D2.30.30.140coord: 106..139
e-value: 8.6E-5
score: 21.7
NoneNo IPR availablePANTHERPTHR23329TUFTELIN-INTERACTING PROTEIN 11-RELATEDcoord: 59..492
NoneNo IPR availablePANTHERPTHR23329:SF2ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEINcoord: 59..492
IPR000467G-patch domainSMARTSM00443G-patch_5coord: 296..342
e-value: 2.3E-14
score: 63.7
IPR000467G-patch domainPFAMPF01585G-patchcoord: 298..339
e-value: 8.4E-13
score: 47.9
IPR000467G-patch domainPROSITEPS50174G_PATCHcoord: 298..344
score: 13.143
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 144..170
e-value: 1.0E-4
score: 31.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 144..171
score: 14.164
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 145..169

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008189 ID=g.arboreum_cottongen_reftransV1_0008189; Name=g.arboreum_cottongen_reftransV1_0008189; organism=Gossypium arboreum; type=contig; length=1642bp
AAAAAAAGTCCCAACAGAAAAGGAGAGAAGAAGCCAAATCTAATTTTAGT
TCATTTCTTTCCCTTTTTTATGGGGTAAAATCTATTACCAAACAATGCAT
AATTTGTAACTAGTCCAACATAAATATTACATAATATCAAAACTTTAGCC
ACTTTTTCTCTTTTTCTTTGCTAACGACTGCATTTGATGCTGAGGCATGA
ACTGCTTCAGCCTCCGCCAAAGCCTTACGAGTCTCGATTAATTTCCTCAT
GGCAGCCTCGTAAACAGCTTTCTCATTTCTGTTTCTGCTTACCATTTCCT
CGAGCTTTACAACTCGTAACTTTAGTTCCTTCACTTCATCATCATAAGCA
ACCAATGCCTTTCTATCAACTTTCTTCTCCTCTCCTGAACCTTTCTTTTG
TTGTTTCTTTGTTGATCCACCATTTACAGCCTCACTTTGCATTGCAAGTT
GGTTGTTGATGAGGCTAAAAACATCTGGTCTTGATTCCTCTTCTTCTTTA
GCAGCCCGAGCGGCTTCAGCGAATTTCTTCTCACGCTTTCTCTTGCCACC
TCTGCTTCGTTTCTTCCCTTTTTTCTCTTTATCCTCATCGTTCTCATGAG
TCTCCAGAGCATGATCAAGTGATAGCTTAGGAGGAAGGACTTTAACTGAG
ATCGGATTTAACATCCCCTGGCCAGATGCACCTAAACCCATCCCTTCACG
GTAACCCATATTGGCCATCATCTTAGAAGCTACACCCCTGGTATGATTTT
CCCACTTAGCAAAGATGGTAGTTTCTGTCTGGATACCTTTCTGTAGAGCA
GTGCTTTCAAGAAAACCTAAACCCTTTGGGCTCTCCTCTTCGTAGTCACT
AGAATCAGATTCTTCAGAGCTTAGTTCACTTTCTTCATCATCACTTATTT
GTGCATATTCAGATAATGTCAAAGCTTCTATCCCAAGCTCTGCAGAGCTT
CCATCATCCCGGAAAACAACCTTCCCCGTTCTGAGTTCATCATTCCATGA
TTCAAGTTCAGCTTCCCTCCAGATGCCAACTTTACTATCAGGGACTGCCC
AAATACTGGACCCAACCATCGATGGCTCCCACATGGTTGGAGCATACTTC
TTCAGCGAAGATAATGGGACATCCACTCCATGCGATAAGCGGCAATTAGC
ACCAAATCGACATCTTTGTTGCAGAAAGAACTTGCATATCAACATATTTT
CTGAAGTAGGTGTGAGGAAAGATATTTTCGCCGAACCAGAACCGTTCAAT
GTGACAACCTGACCATCATACCACCGGCCGTCACTGTAACGGAATCGACA
TTTCGACCCGACCTGATAACTCCGATCTTCCTCCAATGGTTCAACTTCCA
CATCATCTGATTCAAGAGCCTCCGCTTTAACCTCCTCAACCGCTGCTTGA
TTCGAAACATTTAACGCTGAATCAGCTTCTCGAAGTAAACGCGCGCGCTT
AAGATTAAGAAGCCCCTCCTCTGTCTCTTTGATTACCTCAACAAGCTCCT
CGTGAACCGCGAGGATCTGGGGATTGAAAGGATCAGAAGCGAGAGCATCG
TCTAAGGCAGAGAGGGATTCTCTTTGCTCTTTCAATTGAAGCTCCAACTG
GTTCTCTAGAACTCTCTCTTCTTCGTCTGCCATTGTTGTTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding