g.arboreum_cottongen_reftransV1_0008189, g.arboreum_cottongen_reftransV1_0008189 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008189
Unique Nameg.arboreum_cottongen_reftransV1_0008189
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1642
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr4chromosomeg.arboreum_cottongen_reftransV1_0008189:1..1642 .
Chr4:33536213..33539100 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: M1B6M3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014784 PE=4 SV=1)

HSP 1 Score: 462.611 bits (1189), Expect = 5.153e-154
Identity = 331/498 (66.47%), Postives = 407/498 (81.73%), Query Frame = -1
Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            MADEEER LE QLE+QL EQ+++L +L +AL+SDP +P++L+V EELV+ IK+TEEGLL+LKRARLL E D++L+   +   E        ++ +E EPL  D  Y VGSKCRFR +DGRWY+G +V L GS  AK+ F TPTSENM++C+FFLQQRCRFG++CRLSHG+D+P+SSLKKY P  W+ S+ GS IWA  DSK G+W++AEL SW+++L  G +VF DDGSSA LG E + LSE+A+ +D+EES   SEESDSSDYEE+SP+GLGF+EST+LQ+G+QTETT+FAKWENHTRG+AS+MMANMGYREGMGLGASGQGM+NPI VKVLPPK SLDHA++ ++  E ++KK KKRSRGGKRKREKKFA AARAAKE EESRPDVFSLIN QLA+  E +N  +  +++ K  GEEKK DR+ALVAYDDE+K L+++  KLEEMV RNRNEK VYEAAMRKL ETRKA+A AEA HASASNAV SKEKEK+WLKF
Sbjct:    1 MADEEERALEEQLEIQLDEQKDALHSLTEALSSDPSDPELLSVREELVQSIKDTEEGLLHLKRARLLLEVDASLHGFKEQTAEVEVEPLDPTE-IEAEPLV-DEEYAVGSKCRFRNNDGRWYNGLIVGLEGSHFAKVCFRTPTSENMVMCQFFLQQRCRFGSSCRLSHGIDIPISSLKKYIPMKWDSSLAGSCIWARSDSKAGLWKKAELGSWDEKLNLGHIVFCDDGSSATLGAENIELSEHAEATDEEESYSGSEESDSSDYEEDSPEGLGFVESTSLQRGVQTETTLFAKWENHTRGIASRMMANMGYREGMGLGASGQGMVNPIPVKVLPPKQSLDHAIK-NQKAEHEDKKHKKRSRGGKRKREKKFAAAARAAKEVEESRPDVFSLINTQLAVHEETMNNSTGNRRRSKAKGEEKKEDRRALVAYDDEIKGLRIQAQKLEEMVQRNRNEKPVYEAAMRKLNETRKAIATAEAAHASASNAVHSKEKEKRWLKF 495          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: V7BN85_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G047900g PE=4 SV=1)

HSP 1 Score: 459.529 bits (1181), Expect = 6.927e-153
Identity = 333/500 (66.60%), Postives = 404/500 (80.80%), Query Frame = -1
Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEP-LEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDED-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            M  EEERVLENQLELQL+EQR+SLSA+D AL SDP N ++LAVHEELV+ IK+ EEGL +LKRARLL+EAD+ L+ +N   +     +    D  +VEP L E++ + VGSKCRFR+ +GRWY+GQVV L+ S  AK+SFLTPTSENML+CKFFLQQRCRFG++CRLSHGVDV LS+LKK+ PT+WE S+VGSSIWAV  +  G WREAELESW+++   G+VVFRDDGS+ +LG E + LSE+A++SD E      +   S   E+E  +GLGFL+ T LQ+G+QTET  FA WENHTRG+AS+MMANMGYREGMGLG +GQGML+PI VK+LPPK SLD+ALE+H+ +E   ++  KKRSRGGKRKREKKFAEA RAAKEEEES  DVF+LINNQL M SEA  GGS KKQQ KG  E KKVDR+ALVAY++EVK+LK+RV KLE+ V+ N+ EKAVYEAAMRKL +TR+ALA+AEAVH SASNAVVSKEKEK+WLKF
Sbjct:    1 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNLELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAILHNTN---IFAEDEKVEFLDPTDVEPELLEEKCHSVGSKCRFRHINGRWYNGQVVQLDNS-VAKVSFLTPTSENMLMCKFFLQQRCRFGSSCRLSHGVDVQLSALKKFVPTIWEQSLVGSSIWAVSTANAGTWREAELESWDEKAEVGQVVFRDDGSTVKLGAEDMALSEHAEVSDSESDSSLQQSESSDCEEDEESQGLGFLDCTNLQRGVQTETAKFATWENHTRGIASRMMANMGYREGMGLGVTGQGMLDPIPVKILPPKQSLDYALESHKREEKPDKECKKKRSRGGKRKREKKFAEANRAAKEEEESASDVFALINNQLTMHSEAFGGGSMKKQQSKGPEEGKKVDRRALVAYEEEVKDLKMRVEKLEQFVNANKKEKAVYEAAMRKLNKTREALADAEAVHVSASNAVVSKEKEKRWLKF 496          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: M0SKB8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 457.988 bits (1177), Expect = 4.098e-152
Identity = 300/481 (62.37%), Postives = 368/481 (76.51%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLE---------EDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSP-------KGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEA-VNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P N ++L+VHEEL+  IK+ EEGLLNLKR+RLLREAD  +  S Q A          S DV+VEPL+         E  +  VGSKCRFRY+DGRWY+GQ+V L    SA+ISFLTPTSE M +CKFFLQQRCRFG NCRLSHG+ VP+SSLK Y PT+W+ S+VGSSIWA   +  GIWR+AELESW+DEL  G+VVF+DDGSS +L  +AL++SEYA++SD EE++       S   EEE         +GLGFLE+T LQKG+QTETT+FAKWE+HTRG+ASKMMA+MGYREGMGLGASGQG+L+P+ VKVLPPK SLDHA+  +ENDE+   +GK+RSRGGKRKREK++A+AARA+K EEE  PDVF+ INNQLA Q  A V+   +KK    G    ++ DR++LVAYDDEVKEL+ ++ KL EMV+RNR +KA+YEAA RKL ETRKALA+ EA HA+ASNAVV+KEKEKKWLKF
Sbjct:   38 PSNLELLSVHEELILAIKDAEEGLLNLKRSRLLREAD--MIFSGQEAESI-------SQDVKVEPLDLRQDKSELSESETNSVGSKCRFRYTDGRWYNGQIVELGSPTSARISFLTPTSEGMTMCKFFLQQRCRFGNNCRLSHGLIVPISSLKNYIPTVWKQSLVGSSIWAAAGNYSGIWRKAELESWDDELMVGQVVFQDDGSSVKLSSDALSISEYAEMSDGEENDDDFSSDGSESSEEEEDTDSGIGHQGLGFLEATILQKGVQTETTVFAKWEHHTRGIASKMMASMGYREGMGLGASGQGILDPVVVKVLPPKQSLDHAV-ANENDENSVGRGKRRSRGGKRKREKRYADAARASKAEEEKAPDVFNFINNQLAGQDVAYVSSNRSKKGTGNGEASARREDRRSLVAYDDEVKELRNKIEKLAEMVNRNRKDKAIYEAATRKLNETRKALADVEAAHAAASNAVVNKEKEKKWLKF 508          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A022QRR0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a005102mg PE=4 SV=1)

HSP 1 Score: 457.218 bits (1175), Expect = 6.948e-152
Identity = 291/466 (62.45%), Postives = 359/466 (77.04%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSE-AVN-XXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P N ++L+VH EL++ IK+ EEGL  LK++RLLREADS L  S   +  +VK E L+  D E EPL  D  Y VGSKCRFR++DGRWY+G VV L GS SAKI+FL PTSE+ML+CKFFLQQRCRFG NCRL HG+DVPLSSLK+Y PT WE S+VGSSIWA+PD + GIWREAEL SW+++LR G+VVFR DG+S +LG E++TLSEYA++++++++  SS+ + S   EE+  +GLGFLEST  Q+G+QTET IFA WENHTRG+ASKMMANMGYREGMGLG +GQG+LNPISVKVLPPK SLD A++   N E+      K+   G +++  K   AA  A EEE    DVFSLIN +LAM  + ++N GGS KKQQ KG+ EEKK DR AL+AY++EVK L+ +  KLEEMV+RNR EKAVY+AAMRKL ETRKALA+AE  HAS S AV  K+KEKKWLKF
Sbjct:   36 PSNAELLSVHVELIQSIKDAEEGLFQLKKSRLLREADSILEGS--LSSNDVKVELLDPRDNEAEPLV-DEEYSVGSKCRFRHTDGRWYNGLVVGLEGSESAKITFLNPTSESMLMCKFFLQQRCRFGNNCRLLHGIDVPLSSLKEYIPTTWEQSLVGSSIWALPDREAGIWREAELASWDEKLRQGEVVFRYDGTSLKLGTESITLSEYAEVNEEDDTCTSSDSNFSDSEEEDFSQGLGFLESTNSQRGVQTETAIFATWENHTRGIASKMMANMGYREGMGLGVTGQGILNPISVKVLPPKQSLDRAVKNQGNQEN-NVARVKKRTRGGKRKRDKKLAAAAKAAEEEGESKDVFSLINTRLAMHGKGSINGGGSVKKQQNKGNVEEKKEDRWALLAYEEEVKTLRFQCDKLEEMVNRNRKEKAVYDAAMRKLNETRKALADAEVAHASTSKAVARKDKEKKWLKF 497          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: V4NJM8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10000137mg PE=4 SV=1)

HSP 1 Score: 442.58 bits (1137), Expect = 4.119e-146
Identity = 291/476 (61.13%), Postives = 357/476 (75.00%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXS----------PKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHEND-EDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAM-QSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P NP++L+VHEEL+  IK+ EEGLL+LKRARLL+EAD  L+        + +     ++++E E  EE +    GSKCRFR++DGRWY+G+++   GS SAKISFLTPTSE+M++CKFF+QQRCRFG++CR SHG+DVPLSSLK Y PT W+ SMVGS IWAV  SK  IWR AELESW+DEL+ G VVF+ DGSSA+LG +A+ LSEYAQ++DD+  E    E + SD   E           P+G+GFLEST  ++G+QT+T IFAKWENHTRG+ASKMMA+MGYREGMGLGASGQG+++PI VKVLPPK SLDHALE  +N  E  EK  KKRSRGGKRKREKKFAEAARAAK+EEES+ D+FSLINNQL     E VN     ++  K    +  VDRKALVAY++EVKELKL+ +KLE MV RN+N++ V +AA R+L E RKALA   A  ASAS  V SKEKEKKWLKF
Sbjct:   35 PSNPELLSVHEELLSAIKDAEEGLLHLKRARLLQEADIVLHGLTHNVGIKAENVDPLANELEPEKTEEKKDSD-GSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPTSESMMMCKFFMQQRCRFGSSCRSSHGLDVPLSSLKNYDPTEWKQSMVGSKIWAVSGSKYDIWRVAELESWDDELKVGGVVFKGDGSSAKLGSDAIALSEYAQMTDDDGEEDEQYEEEGSDSGSEESGSSDCDEEFPEGIGFLESTNQRRGVQTDTAIFAKWENHTRGIASKMMASMGYREGMGLGASGQGIVDPILVKVLPPKRSLDHALEHIKNGVEKSEKPKKKRSRGGKRKREKKFAEAARAAKQEEESKQDLFSLINNQLCTSHHEKVN----GRESVKKRQNKGPVDRKALVAYEEEVKELKLQAMKLEAMVKRNKNDQIVSDAATRRLNEVRKALACTMAAQASASKDVESKEKEKKWLKF 505          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: C3H22_ARATH (Zinc finger CCCH domain-containing protein 22 OS=Arabidopsis thaliana GN=At2g24830 PE=2 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 2.840e-140
Identity = 287/481 (59.67%), Postives = 351/481 (72.97%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXX----------SPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDE-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQL------AMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P NP++L+VHEEL+  IKE EEGLL+LKRARLL EAD  LN  N  A  +        + +E E  EE +    GSKCRFR++DGRWY+G+++   GS SAKISFLTPTSE+M+ICKFF+QQRCRFG++CR SHG+DVP+SSLK Y  T W+  MVGS IWAV  SK  IWR+AELESW+DEL+ G VVFRDD SSA+LG ++L LSEYAQ++DD+  E   E+   S  + E          SP+G+GFLEST L +G+QT+T +FAKWENHTRG+ASKMMA+MGYREGMGLG SGQG+LNPI VKVLP K SLD+ALE   N E   EK+ KKRSRGGKRKR KKFAEAA+AAK+EEES+PD+FSLIN Q+       + SE+V               +  VDRKALV Y DEV++LKL ++KLE+MV+RN+ +  V EAA R+L E RKALA   A  A+ASNA+VSKE EKKWLKF
Sbjct:   35 PSNPELLSVHEELLSAIKEVEEGLLHLKRARLLEEADIVLNGLNHDAGVK-------PEHLEPEKTEEKKDLD-GSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPTSESMMICKFFMQQRCRFGSSCRSSHGLDVPISSLKNYEQTEWKQLMVGSKIWAVSGSKYDIWRKAELESWDDELQVGGVVFRDDKSSAKLGSDSLALSEYAQMTDDDGEEEEEEDEQQSASDSEDSVSSDYDEGSPQGIGFLESTNLPRGVQTDTALFAKWENHTRGIASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRSLDYALEHIRNGECKSEKQKKKRSRGGKRKRGKKFAEAAKAAKQEEESKPDLFSLINEQIFPTRHEKVHSESVK----------NRQNKGPVDRKALVEYQDEVRDLKLEMLKLEQMVNRNKKDLVVSEAATRRLKEVRKALASTLACQAAASNAIVSKENEKKWLKF 497          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: C3H18_ORYSJ (Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica GN=Os02g0793000 PE=2 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 1.216e-135
Identity = 265/471 (56.26%), Postives = 329/471 (69.85%), Query Frame = -1
Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXX-----XXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQ--SEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P N  +L VHEEL+  IK+ EEGLL+LKR+RL+++ D     + +   E  +      DDVE EPLE  + + VGSKCRFR+ DGRWY+G V+ L GS  A+ISFLTPTSENM +CKFFLQQRCRFG+NCRLSHG+ +P+ SLK++ PT W+ S+VGSSI A      G+WR AELESW+D+L+ G+VVF+DDGSSA L  ++L++SEYA  SD         E S    D    +E   +GLG LES  L  G+QTET IFAKWE+HTRGVASKMMA MGYREGMGLG SGQGML+PI VKVLPPK SLDHA+   E ++      K+   G +++ +K   +A  A  EEEE    VFS IN+QL  Q  +E     S K    + +G  KK DR++L+AYDDEVKEL+ RV KLEEM+ RNR +KA YEAA +KL +TRKALA+AEA HASA+NAV  KEKEKKWLKF
Sbjct:   39 PSNADLLEVHEELLAAIKDAEEGLLHLKRSRLVKQIDEIF-PNQEPTSEAPEVAVDPPDDVEPEPLEP-QEFSVGSKCRFRHKDGRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSLSISEYADESDEDGEGSSSDEGSDFSEDGDQEDESVHQGLGLLESKNLS-GVQTETAIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGPGKKRSRGGKRKREKKFAEQARAAKAEEEERS--VFSFINSQLVGQDVAEGSAVKSKKDSSGEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASKKLKQTRKALADAEATHASATNAVARKEKEKKWLKF 504          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_HUMAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Homo sapiens GN=ZGPAT PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 7.124e-21
Identity = 70/233 (30.04%), Postives = 104/233 (44.64%), Query Frame = -1
Query:  599 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWN--------DELRTGKVVFRDDGSSAELGIEALTL---------SEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALET 1246
            +GS   ++ +L PT +++  C FFL+ +CRF  NCR SHG  V L  L+ +          GS+  A    + G+W  A +   +        D L   + V   DG    L  EA            S YA++   +  + +   +            L  + S A+  G  T ++ FA WE HTRG+ S+++  MGY  G GLG   +G + PI   VLP   SLD  +ET
Sbjct:  160 DGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLA--KHQDGLWHAARITDVDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSAQSSALCPS--------LAVVGSDAVDSG--TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 380          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_AEDAE (Zinc finger CCCH-type with G patch domain-containing protein OS=Aedes aegypti GN=AAEL004458 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.335e-20
Identity = 66/249 (26.51%), Postives = 120/249 (48.19%), Query Frame = -1
Query:  593 VGSKCR----FRYSDGRWYDGQVVTLNGSG----SAKISFLTPTSENMLICKFFLQQRCRFGAN-CRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 1312
            VGSKC      ++    +++  + +L+ S     +AK+ F+ PT + M+ C +FL+  C+F    CR SHG  + ++ LK+Y    +E  +       +  ++  IW +  +++ + E +T K+   +     EL  E +   E   +   +    S  + ++ D      +    +E + L             WE HT+G+ SK+M  MGY  G GLG+ G+G++ P+S +VLP   SLD+ ++  E
Sbjct:  114 VGSKCSAPHIHKWGSKSYHNALICSLDASDLDDVAAKVLFINPTHQEMVPCAYFLEGDCKFNDEMCRFSHGELISINELKEYREPRFE-LLRKKGCKVLAKNRNRIWSKGTIQTADFETKTCKIQMDEGRHEVELQFENVLPLEGDDVPSSDSESNSDSDEENEDDVVSLQQA-QIIERSLLNPAPDQR---LGDWEKHTKGIGSKIMLKMGYVVGAGLGSKGEGIVVPVSAQVLPQGRSLDYCMQLRE 357          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_ANOGA (Zinc finger CCCH-type with G patch domain-containing protein OS=Anopheles gambiae GN=AGAP002111 PE=3 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 2.934e-19
Identity = 76/262 (29.01%), Postives = 118/262 (45.04%), Query Frame = -1
Query:  590 VGSKCR----FRYSDGRWYDGQVVTLNGS----GSAKISFLTPTSENMLICKFFLQQRCRF-GANCRLSHGVDVPLSSLKKY-APTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGI---EALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIF--------AKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHEN 1312
            VGSKC       +    +++  V +L+       +AK+ F  PT   ML C +FL+  CRF    CR SHG  V L  L+ Y AP        GS   A+      +W +  +   + + +  KV   ++G   +L +   + L L E          +   +E+      +         +  AL+K +  E ++F         +WE HTRG+ SK+M  MGY  G GLG  G+G++ P+S +VLP   SLD+ +E  E 
Sbjct:  137 VGSKCSAPHLHTWGSTAYHNAMVCSLDADDLAHATAKVLFTNPTHREMLPCAYFLEGECRFTDEKCRYSHGEVVRLDQLRDYRAPQFERLRRAGSR--ALVKQSTRLWCKGTVTEVDFDAKRCKVRL-EEGKREQLEVPFEDLLPLDE----------DEDGQEAAEDSESDTDGADEEEADDEALRKALLVEKSLFHPAPDRRLGEWEEHTRGIGSKIMQKMGYIVGTGLGREGEGIVVPVSAQVLPQGRSLDYCMELREQ 385          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila ananassae GN=GF15731 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.126e-18
Identity = 73/235 (31.06%), Postives = 113/235 (48.09%), Query Frame = -1
Query:  593 VTLNGSGSA----KISFLTPTSENMLICKFFLQQRCRFG-ANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWA-VPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIF--------AKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 1255
            V +NG G+     ++ F  PT   ML C ++L+  CRF  A CR SHG  V  SS++KY P  +        + A +PD    +W    +   N   +  +V  R DG   +         E   ++ D+E EL+SE+S S +      +     +  A ++    E ++F          WE +TRG+ SK+M  MGY  G GLG+ G+G++ P+S ++LP   SLD  +E  E
Sbjct:  131 VIINGDGALDARLRVLFTNPTHREMLPCSYYLEGECRFDEARCRYSHGALVTGSSIRKYNPPDFHKLSRSCPVLAQLPDR---LWHRGRVLCVNFVEQVCRV--RLDGQDHKERERDFKFEELFPLTTDQEDELTSEDSSSVNDGSSDEEESDMDDLEAARRARMVELSLFTFKPTEKLGAWEEYTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPKGRSLDACMELRE 360          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_RAT (Zinc finger CCCH-type with G patch domain-containing protein OS=Rattus norvegicus GN=Zgpat PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.159e-18
Identity = 66/233 (28.33%), Postives = 97/233 (41.63%), Query Frame = -1
Query:  602 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWN--------DELRTGKVVFRDDGSSAELGIEALTLSE----------YAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALE 1246
            +GS   ++ +L PT +++  C FFL+ +CRF  NCR SHG  V +  L+ +          GS+  A    + G+W  A +   +        D L   + V   D     L  EA   S+          YA++                            +E+  +  G  T ++ FA WE HTRG+ SK++  MGY  G GLG   +G + PI   VLP   SLD   E
Sbjct:  155 DGSACVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQLVSVDELRPFQDPDLSLLQTGSACLA--KHQDGLWHPARITDVDNGYYTVKFDSLLLKEAVVEGDSILPPLRTEATDSSDSDTGDASDSSYARV----------------------------VEANTVDTG--TCSSAFAGWEVHTRGIGSKLLVKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCAE 355          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_MOUSE (Zinc finger CCCH-type with G patch domain-containing protein OS=Mus musculus GN=Zgpat PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.732e-18
Identity = 66/233 (28.33%), Postives = 97/233 (41.63%), Query Frame = -1
Query:  602 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWN--------DELRTGKVVFRDDGSSAELGIEALTLSE----------YAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALE 1246
            +GS   ++ +L PT +++  C FFL+ +CRF  NCR SHG  V +  L+ +          GS+  A    + G+W  A +   +        D L   + V   D     L  EA   S+          YA++                            +E + +  G  T ++ FA WE HTRG+ SK++  MGY  G GLG   +G + PI   VLP   SLD   E
Sbjct:  159 DGSACVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSVDELRPFQDPDLSLLQTGSACLA--KHQDGLWHPARITDVDNGYYTVKFDSLLLKEAVVEGDSILPPLRTEATESSDSDTGDASDSSYARV----------------------------VEPSTVDTG--TCSSAFAGWEVHTRGIGSKLLVKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCAE 359          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_SALSA (Zinc finger CCCH-type with G patch domain-containing protein OS=Salmo salar GN=zgpat PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.250e-18
Identity = 66/217 (30.41%), Postives = 101/217 (46.54%), Query Frame = -1
Query:  602 KISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGK--------VVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALE 1228
            ++ ++ PT ++M  C FFL+ +CRF  NCR SHG  V +S L+++  +       GSS  A  D   GIW   ++   +++  T K        V+   DG    L  + L     ++            + D+ + E   P+ L   E  A  +     ++ F  WE HTRG+ SK+M  MGY  G GLG + +G + P+   VLP   SLD   E
Sbjct:  165 RVLYVHPTQKSMKPCPFFLEDKCRFADNCRFSHGEVVYVSELREFLESDLTNLQEGSSCLARQDD--GIWYSGKITDIDNDFYTVKFDSALLKNVMVEADGVIPPLREDDLPSCSDSE------------DDDNGEGEAAFPRVLTQEEDWAPSR----SSSAFGGWEAHTRGIGSKLMLKMGYEYGKGLGKTSEGRVEPVLAVVLPKGKSLDQCAE 363          
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_XENTR (Zinc finger CCCH-type with G patch domain-containing protein OS=Xenopus tropicalis GN=zgpat PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.034e-17
Identity = 64/218 (29.36%), Postives = 104/218 (47.71%), Query Frame = -1
Query:  593 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 1246
            +G    ++ +L PT + M  C FFL  +CRF  +CR SHG  V L+ L+ +A        VGS   A      GIW  A +     ++++G    + D   + L  E++  ++            SS++ D  + E+++ +  G+             ++ F  WE HTRG+ SK++A MGY  G GLG + +G + PI   +LP   SLD  +E  +
Sbjct:  156 DGEAGVRVLYLYPTHKAMKPCPFFLDGKCRFDDSCRFSHGQVVALAELQPFAEADVASLAVGSPCLA--QHSDGIWYPARI----TDIKSGFYTVKFD---SLLLKESVLEADSIIPPLRGSDSSSSDDDDDDEEEDDAAEDSGYARVLGAGSAGSAHSSQFGGWEAHTRGIGSKLLARMGYEIGKGLGRNAEGRVEPIQAVLLPKGKSLDQCIEMQQ 364          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
M1B6M3_SOLTU5.153e-15466.47Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
V7BN85_PHAVU6.927e-15366.60Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
M0SKB8_MUSAM4.098e-15262.37Uncharacterized protein OS=Musa acuminata subsp. m... [more]
A0A022QRR0_ERYGU6.948e-15262.45Uncharacterized protein OS=Erythranthe guttata GN=... [more]
V4NJM8_EUTSA4.119e-14661.13Uncharacterized protein OS=Eutrema salsugineum GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
C3H22_ARATH2.840e-14059.67Zinc finger CCCH domain-containing protein 22 OS=A... [more]
C3H18_ORYSJ1.216e-13556.26Zinc finger CCCH domain-containing protein 18 OS=O... [more]
ZGPAT_HUMAN7.124e-2130.04Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_AEDAE1.335e-2026.51Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_ANOGA2.934e-1929.01Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_DROAN1.126e-1831.06Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_RAT4.159e-1828.33Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_MOUSE4.732e-1828.33Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_SALSA5.250e-1830.41Zinc finger CCCH-type with G patch domain-containi... [more]
ZGPAT_XENTR2.034e-1729.36Zinc finger CCCH-type with G patch domain-containi... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 247..267
NoneNo IPR availableCOILSCoilCoilcoord: 427..454
NoneNo IPR availableCOILSCoilCoilcoord: 1..30
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableCOILSCoilCoilcoord: 458..478
NoneNo IPR availableGENE3D2.30.30.140coord: 106..139
e-value: 8.6E-5
score: 21.7
NoneNo IPR availablePANTHERPTHR23329TUFTELIN-INTERACTING PROTEIN 11-RELATEDcoord: 59..492
NoneNo IPR availablePANTHERPTHR23329:SF2ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEINcoord: 59..492
IPR000467G-patch domainSMARTSM00443G-patch_5coord: 296..342
e-value: 2.3E-14
score: 63.7
IPR000467G-patch domainPFAMPF01585G-patchcoord: 298..339
e-value: 8.4E-13
score: 47.9
IPR000467G-patch domainPROSITEPS50174G_PATCHcoord: 298..344
score: 13.143
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 144..170
e-value: 1.0E-4
score: 31.7
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 144..171
score: 14.164
IPR000571Zinc finger, CCCH-typeSUPERFAMILY90229CCCH zinc fingercoord: 145..169

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008189 ID=g.arboreum_cottongen_reftransV1_0008189; Name=g.arboreum_cottongen_reftransV1_0008189; organism=Gossypium arboreum; type=contig; length=1642bp
AAAAAAAGTCCCAACAGAAAAGGAGAGAAGAAGCCAAATCTAATTTTAGT
TCATTTCTTTCCCTTTTTTATGGGGTAAAATCTATTACCAAACAATGCAT
AATTTGTAACTAGTCCAACATAAATATTACATAATATCAAAACTTTAGCC
ACTTTTTCTCTTTTTCTTTGCTAACGACTGCATTTGATGCTGAGGCATGA
ACTGCTTCAGCCTCCGCCAAAGCCTTACGAGTCTCGATTAATTTCCTCAT
GGCAGCCTCGTAAACAGCTTTCTCATTTCTGTTTCTGCTTACCATTTCCT
CGAGCTTTACAACTCGTAACTTTAGTTCCTTCACTTCATCATCATAAGCA
ACCAATGCCTTTCTATCAACTTTCTTCTCCTCTCCTGAACCTTTCTTTTG
TTGTTTCTTTGTTGATCCACCATTTACAGCCTCACTTTGCATTGCAAGTT
GGTTGTTGATGAGGCTAAAAACATCTGGTCTTGATTCCTCTTCTTCTTTA
GCAGCCCGAGCGGCTTCAGCGAATTTCTTCTCACGCTTTCTCTTGCCACC
TCTGCTTCGTTTCTTCCCTTTTTTCTCTTTATCCTCATCGTTCTCATGAG
TCTCCAGAGCATGATCAAGTGATAGCTTAGGAGGAAGGACTTTAACTGAG
ATCGGATTTAACATCCCCTGGCCAGATGCACCTAAACCCATCCCTTCACG
GTAACCCATATTGGCCATCATCTTAGAAGCTACACCCCTGGTATGATTTT
CCCACTTAGCAAAGATGGTAGTTTCTGTCTGGATACCTTTCTGTAGAGCA
GTGCTTTCAAGAAAACCTAAACCCTTTGGGCTCTCCTCTTCGTAGTCACT
AGAATCAGATTCTTCAGAGCTTAGTTCACTTTCTTCATCATCACTTATTT
GTGCATATTCAGATAATGTCAAAGCTTCTATCCCAAGCTCTGCAGAGCTT
CCATCATCCCGGAAAACAACCTTCCCCGTTCTGAGTTCATCATTCCATGA
TTCAAGTTCAGCTTCCCTCCAGATGCCAACTTTACTATCAGGGACTGCCC
AAATACTGGACCCAACCATCGATGGCTCCCACATGGTTGGAGCATACTTC
TTCAGCGAAGATAATGGGACATCCACTCCATGCGATAAGCGGCAATTAGC
ACCAAATCGACATCTTTGTTGCAGAAAGAACTTGCATATCAACATATTTT
CTGAAGTAGGTGTGAGGAAAGATATTTTCGCCGAACCAGAACCGTTCAAT
GTGACAACCTGACCATCATACCACCGGCCGTCACTGTAACGGAATCGACA
TTTCGACCCGACCTGATAACTCCGATCTTCCTCCAATGGTTCAACTTCCA
CATCATCTGATTCAAGAGCCTCCGCTTTAACCTCCTCAACCGCTGCTTGA
TTCGAAACATTTAACGCTGAATCAGCTTCTCGAAGTAAACGCGCGCGCTT
AAGATTAAGAAGCCCCTCCTCTGTCTCTTTGATTACCTCAACAAGCTCCT
CGTGAACCGCGAGGATCTGGGGATTGAAAGGATCAGAAGCGAGAGCATCG
TCTAAGGCAGAGAGGGATTCTCTTTGCTCTTTCAATTGAAGCTCCAACTG
GTTCTCTAGAACTCTCTCTTCTTCGTCTGCCATTGTTGTTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR000467G_patch_dom
IPR000571Znf_CCCH
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding