g.arboreum_cottongen_reftransV1_0008189, g.arboreum_cottongen_reftransV1_0008189 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0008189
Unique Name	g.arboreum_cottongen_reftransV1_0008189
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	1642

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0008189:1..1642 . Chr4:33536213..33539100 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: B9RNS4_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0920370 PE=4 SV=1)

HSP 1 Score: 503.442 bits (1295), Expect = 4.380e-170
Identity = 334/464 (71.98%), Postives = 389/464 (83.84%), Query Frame = -1

Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P N ++L+V EELV+ IK+ E+GLL+LKRARLLRE DSAL+ S +    +VK E L+SD+V  EPLEE  S+ VGSKCRFR++DGRWY+G+++ L GS +AKI+FLTPTSENML CKFFLQQRCRFG NCRLSHGVDVPLSSL+ Y PTMW+ SMVGSSIWAV DS  GIWREAELESW+D+LR GKVVFRDDGSSAEL  +++ LSE+A  SD+EES  SSE+SDSSDYEEES +GLGFLES+ LQ+GIQTET IFA+WENHTRG+ASKMMANMGYR+GMGLGASGQGM++PISVKVLPPK SLDHAL++ + +E +E  GKKRSRGGKRKREKK A  A+ AKEEEE  PDVFSLIN QLA  +EA+N     K ++  +   KKVDR+ L+AYDDE+KEL+LR  KLEEM SRN+ EK VYEAAMRKL ETRKALAEAEA HASASNAVVSKEKEKKWLKF
Sbjct:   36 PSNHELLSVQEELVQAIKDAEDGLLHLKRARLLREVDSALHDS-KDTGNDVKIEPLDSDEVGAEPLEE-HSHSVGSKCRFRHNDGRWYNGKIIELEGSTNAKIAFLTPTSENMLTCKFFLQQRCRFGTNCRLSHGVDVPLSSLRTYIPTMWDQSMVGSSIWAVSDSNAGIWREAELESWDDKLRVGKVVFRDDGSSAELESDSMNLSEHALKSDEEESHSSSEQSDSSDYEEESAQGLGFLESSTLQRGIQTETAIFARWENHTRGIASKMMANMGYRDGMGLGASGQGMVDPISVKVLPPKQSLDHALQSQKEEEIRENHGKKRSRGGKRKREKKLAALAKEAKEEEEMNPDVFSLINIQLAKHNEALN--GGSKTKQHHNKVSKKVDRRVLIAYDDEMKELRLRAEKLEEMASRNKKEKVVYEAAMRKLNETRKALAEAEAAHASASNAVVSKEKEKKWLKF 495

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A068VCQ1_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_257 OS=Coffea canephora GN=GSCOC_T00000326001 PE=4 SV=1)

HSP 1 Score: 495.352 bits (1274), Expect = 7.093e-167
Identity = 330/462 (71.43%), Postives = 393/462 (85.06%), Query Frame = -1

Query:  140 NPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1525
            N ++LAV  ELV+ I + EEGLL+LKRARLLREAD  L    +  VEEVK E+L+ +DVEVEP+  D+SY VGSKCRFR++DGRWY+G ++ L GS SAKISFLTPTSE+ML+CKFFLQQRCRFG++CRLSHGVDVP+SSLK+Y PT+WE S+ GSSIWA+ D+K GIWREAELESW++ L  G VVFRDDGSSA+LG+ AL+LSE+A++SD+E+S+L SEE+DSSD  E++ +GLGFLE+T  QKGIQTET IFAKWENHTRG+ASKMMA+MGYR+GMGLGASGQG+++PI VKVLPPK SLDHA+E  EN++DKE +GKKRSRGGKRKREKKFA A RAAKE+EES PDVFSLIN QLA   E +NGGSTKKQQ   +   +K DR  LVAY+DEVKEL++RV KLEEMV RN+ EK VYEAAMRKL ETRK LAEAEA HASAS+AV+SKEKEK+WLKF
Sbjct:   38 NAELLAVQAELVQAISDVEEGLLHLKRARLLREADFVLQ-GPKGHVEEVKVESLDPNDVEVEPVV-DQSYSVGSKCRFRHTDGRWYNGLILGLEGSNSAKISFLTPTSESMLMCKFFLQQRCRFGSSCRLSHGVDVPISSLKQYIPTVWEQSLAGSSIWALQDAKFGIWREAELESWDEMLNLGHVVFRDDGSSAKLGVGALSLSEFAEVSDEEDSDLGSEETDSSDSGEDNSRGLGFLETTTSQKGIQTETAIFAKWENHTRGIASKMMASMGYRDGMGLGASGQGIVDPIPVKVLPPKQSLDHAVENQENEKDKENQGKKRSRGGKRKREKKFAAACRAAKEQEESEPDVFSLINTQLAKHGETLNGGSTKKQQNMANDAGRKDDRSRLVAYEDEVKELRMRVEKLEEMVIRNKKEKVVYEAAMRKLTETRKLLAEAEAAHASASSAVISKEKEKRWLKF 497

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A0B2NVJ9_GLYSO (Zinc finger CCCH domain-containing protein 18 OS=Glycine soja GN=glysoja_006369 PE=4 SV=1)

HSP 1 Score: 483.797 bits (1244), Expect = 1.995e-162
Identity = 340/499 (68.14%), Postives = 407/499 (81.56%), Query Frame = -1

Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            M  EEERVLENQLELQL+EQR+SLSA+D AL SDP +P++LAVHEELV+ IK+ EEGLL+LKRARLL+EADS L+ +N     E K + L+   VE EPLE D+ Y VGSKCRFR+ DGRWY+GQVV L+ S  AK+SFLTPTSENML+CKFFLQQRCRFG+NCRLSHG+DV LS+LKKY PT+W+ S+VGSSIWAV  +  G WREAEL+SW+++   G+VVFRDDGSS +LG E + LSE+A++SD E      +   S   EEE  +G+GFLEST LQ+GIQTET  FA WENHTRG+ASKMMANMGYREGMGLG +GQGML+PI+VKVLPPK SLDHALE+H+ +E+KEK+GKK+   G +++ +K  AEA RAAKEEEES  DVF+LINN LAM +EA  GG  KKQQ KGS E KKVDR+ALVAY++EVK+LK+RV KLE +V+ NR EKAVYE AMRKL ETRKALA+AEAVHASASN+V SKEKEK+WLKF
Sbjct:    1 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTDPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTN--IFTEEKVDPLDPTYVEPEPLE-DKCYSVGSKCRFRHKDGRWYNGQVVQLDNS-VAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELKSWDEKAGVGQVVFRDDGSSVKLGAEEMALSEHAEMSDIESDSSLDQSDSSDYEEEEESQGIGFLESTNLQRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIAVKVLPPKQSLDHALESHKREENKEKQGKKKQSRGGKRKREKKFAEANRAAKEEEESASDVFALINNHLAMHNEAFGGGLMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKIRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF 495

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: M5XSY5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004892mg PE=4 SV=1)

HSP 1 Score: 483.411 bits (1243), Expect = 2.515e-162
Identity = 364/501 (72.65%), Postives = 414/501 (82.63%), Query Frame = -1

Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWN-DELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHEN--DEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            MA+EEERVLEN LELQL+EQR SL+ ++DALAS+P N +ILA+HEE+V+ IK+ EEGLL+LKRARLLREAD  L+ S  A  +        +D VE EPLEE  SY VGSKCRF ++DGRWY+GQV+ L+GS SAKISFLTPTSENMLICKFFLQQRCRFG NCRLSHGVDVPLSSLKKY PT+WE S VGS+IWAV D K G+WREA+LESW+   L  GKVVFRDDGSSA LG EA+TLSEYAQ+S +EES+ SSE+SD SD E+E P+GLGFLEST LQ+GIQT+T IFAKWENHTRG+ASKMMANMGY EG GLGASGQG+++PISVKVLP K SLD A+ + E   +E KE +GKKRSRGGKRKREKKFA  ARAAKEEEES PDVF+L            NGGS KKQQ KGSGE K+VDR+ALVAYDDEVK+LK+RVVKLEEM SRN+ EK VYEAAMRKL ETRKALAEAEA  ASASNAVVS+EKEK+WLKF
Sbjct:    1 MANEEERVLENLLELQLQEQRVSLATINDALASEPNNTEILALHEEIVQAIKDAEEGLLHLKRARLLREADLVLDGSAHADEDVKMETLDPTD-VEPEPLEEP-SYTVGSKCRFCHTDGRWYNGQVIGLDGSNSAKISFLTPTSENMLICKFFLQQRCRFGTNCRLSHGVDVPLSSLKKYTPTIWEQSHVGSNIWAVTDGKTGVWREAKLESWDGGALGVGKVVFRDDGSSANLGEEAITLSEYAQMSAEEESDSSSEQSDFSDDEDEGPQGLGFLESTILQRGIQTDTAIFAKWENHTRGIASKMMANMGYLEGTGLGASGQGIVDPISVKVLPAKQSLDLAVGSCEGKVEEGKENQGKKRSRGGKRKREKKFAALARAAKEEEESTPDVFTL------------NGGSGKKQQNKGSGEGKRVDRRALVAYDDEVKDLKVRVVKLEEMASRNKKEKVVYEAAMRKLTETRKALAEAEAAQASASNAVVSREKEKRWLKF 487

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: I1KYC3_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 483.411 bits (1243), Expect = 3.764e-162
Identity = 340/501 (67.86%), Postives = 407/501 (81.24%), Query Frame = -1

Query:  140 TTMADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1639
              M  EEERVLENQLELQL+EQR+SLSA+D AL SDP +P++LAVHEELV+ IK+ EEGLL+LKRARLL+EADS L+ +N     E K + L+   VE EPLE D+ Y VGSKCRFR+ DGRWY+GQVV L+ S  AK+SFLTPTSENML+CKFFLQQRCRFG+NCRLSHG+DV LS+LKKY PT+W+ S+VGSSIWAV  +  G WREAEL+SW+++   G+VVFRDDGSS +LG E + LSE+A++SD E      +   S   EEE  +G+GFLEST LQ+GIQTET  FA WENHTRG+ASKMMANMGYREGMGLG +GQGML+PI+VKVLPPK SLDHALE+H+ +E+KEK+GKK+   G +++ +K  AEA RAAKEEEES  DVF+LINN LAM +EA  GG  KKQQ KGS E KKVDR+ALVAY++EVK+LK+RV KLE +V+ NR EKAVYE AMRKL ETRKALA+AEAVHASASN+V SKEKEK+WLKF
Sbjct:    7 VAMGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTDPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTN--IFTEEKVDPLDPTYVEPEPLE-DKCYSVGSKCRFRHKDGRWYNGQVVQLDNS-VAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELKSWDEKAGVGQVVFRDDGSSVKLGAEEMALSEHAEMSDIESDSSLDQSDSSDYEEEEESQGIGFLESTNLQRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIAVKVLPPKQSLDHALESHKREENKEKQGKKKQSRGGKRKREKKFAEANRAAKEEEESASDVFALINNHLAMHNEAFGGGLMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKIRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF 503

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A0A0LSP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382790 PE=4 SV=1)

HSP 1 Score: 483.026 bits (1242), Expect = 5.596e-162
Identity = 354/499 (70.94%), Postives = 421/499 (84.37%), Query Frame = -1

Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETH-ENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            MA +EER LE+QLE+QL EQ+ESL+AL DALASDP N ++L VHEELV+ IK+ EEGLL+LKR+RLLREAD+ L   +  A E+VK E L++ D++ EPLE D S+ VGSKCRFRY+DGRWYDG++V L+GS SAKISFLTPT+ENML+CKFFLQQRCRFG NCRLSHGVD+PL+SL+ Y PT+W  SM GSSI A+  S+  IWR AELESW+D L+  +VVF+ DG S +LG E + LSEYA I+D+EES+ S E+SDSSDYEE+  +GLGFLES+  QKGIQTETTIFAKWENHTRG+ASKMMANMGYREGMGLGASGQGMLNPI VKVLP K SLDHALE+  EN+ + E  GKKRSRGGKRKREKKFA A+RAAKEEEESRPDVF+LIN+ LAM + A+N GS KKQ+ KGS + KKVDR+ ++AYDDEVK+L++R+ KLEEMV+RN+ EK VYEAA+RKL ETRKALAEAEA HASASNAV S+EKEK+WLKF
Sbjct:    1 MASDEERALEHQLEVQLYEQKESLAALQDALASDPSNSELLEVHEELVQAIKDAEEGLLHLKRSRLLREADTVLRGHDSNAAEDVKVEPLDATDIKPEPLE-DHSFFVGSKCRFRYTDGRWYDGEIVGLDGSNSAKISFLTPTTENMLMCKFFLQQRCRFGTNCRLSHGVDIPLTSLRSYVPTIWNQSMAGSSILALS-SRNDIWRHAELESWDDALQVAQVVFKGDGYSQKLGPEDIALSEYALINDEEESDSSLEQSDSSDYEEDDLQGLGFLESSTQQKGIQTETTIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKENNTNDENNGKKRSRGGKRKREKKFAAASRAAKEEEESRPDVFNLINHHLAMHNRALNDGSVKKQKDKGSADWKKVDRRTIIAYDDEVKDLRIRIEKLEEMVNRNKKEKVVYEAALRKLNETRKALAEAEAAHASASNAVNSREKEKRWLKF 497

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: I1N0J9_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 480.33 bits (1235), Expect = 5.370e-161
Identity = 354/498 (71.08%), Postives = 415/498 (83.33%), Query Frame = -1

Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            M  EEERVLENQLELQL+EQR+SLSA+  AL SDP NP++LAVHEELV+ IK+ EEGLL+LKRARLL+EADS L+ +N    EE K E L+S DVE EPLE D+ Y VGSKCRFR+ DGRWY+GQVV L+ +  AK+SFLTPTSENML+CKFFLQQRCRFG+NCRLSHG+DV LS+LKKY PT+W+ S+VGSSIWAV  +  G WREAELES +++   G+VVFRD+GSS ++G E + LSE+A++  D ES+ S  +SDSSDYEEE P+GLGFLEST L++GIQTET  FA WENHTRG+ASKMMANMGYREGMGLG +GQGML+PI VKVLPPK SLDHALE+H+   + ++  KKRSRGGKRKREKKFAE  RAAKEEEES  DVF+LINN LAM SEA   GS KKQQ KGS E KKVDR+ALVAY++EVK+LK+RV KLE +V+ NR EKAVYE AMRKL ETRKALA+AEAVHASASN+V SKEKEK+WLKF
Sbjct:    1 MGSEEERVLENQLELQLQEQRDSLSAIGQALLSDPTNPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTN-IFTEEEKVEPLDSTDVEPEPLE-DKCYSVGSKCRFRHKDGRWYNGQVVQLD-NAVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELESLDEKAGVGQVVFRDNGSSVKVGAEEMALSEHAEM-SDLESDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKR--EGKEGKKKRSRGGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF 492

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A0B2PY90_GLYSO (Zinc finger CCCH domain-containing protein 18 OS=Glycine soja GN=glysoja_035344 PE=4 SV=1)

HSP 1 Score: 480.33 bits (1235), Expect = 5.370e-161
Identity = 354/498 (71.08%), Postives = 415/498 (83.33%), Query Frame = -1

Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            M  EEERVLENQLELQL+EQR+SLSA+  AL SDP NP++LAVHEELV+ IK+ EEGLL+LKRARLL+EADS L+ +N    EE K E L+S DVE EPLE D+ Y VGSKCRFR+ DGRWY+GQVV L+ +  AK+SFLTPTSENML+CKFFLQQRCRFG+NCRLSHG+DV LS+LKKY PT+W+ S+VGSSIWAV  +  G WREAELES +++   G+VVFRD+GSS ++G E + LSE+A++  D ES+ S  +SDSSDYEEE P+GLGFLEST L++GIQTET  FA WENHTRG+ASKMMANMGYREGMGLG +GQGML+PI VKVLPPK SLDHALE+H+   + ++  KKRSRGGKRKREKKFAE  RAAKEEEES  DVF+LINN LAM SEA   GS KKQQ KGS E KKVDR+ALVAY++EVK+LK+RV KLE +V+ NR EKAVYE AMRKL ETRKALA+AEAVHASASN+V SKEKEK+WLKF
Sbjct:    1 MGSEEERVLENQLELQLQEQRDSLSAIGQALLSDPTNPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTN-IFTEEEKVEPLDSTDVEPEPLE-DKCYSVGSKCRFRHKDGRWYNGQVVQLD-NAVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELESLDEKAGVGQVVFRDNGSSVKVGAEEMALSEHAEM-SDLESDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKR--EGKEGKKKRSRGGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF 492

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: B9IL87_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0018s02840g PE=4 SV=1)

HSP 1 Score: 476.863 bits (1226), Expect = 1.247e-159
Identity = 322/473 (68.08%), Postives = 384/473 (81.18%), Query Frame = -1

Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLE---------EDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P NP++L+V EEL++VIK+ EEGLL+LKRARLLREADS L+ S               +DV+ EPL+         ED+ Y VGSKCRFR+ DGRWY+GQ++ L  S +AKI+FLTP SENMLICKFFLQ+RCRFG +CRLSHGVDV LSSLK Y PTMW+ S+VGSSIWA+ DS VGIWR+AELESW++E R G+VVF D GSSA+LG EA+T+SEYA +SD+EE++ SSE SDSSDY+EES +GLGFLEST LQ+GIQT T IFA WENHTRG+ASKMMANMGYREGMGLGASGQGML+PI VKVLPPK SLDHALE+ + +  K+  GKKRSRGGKRKREKKFA AARAAK EEE+RPDVF+LINNQLA  +EA+N   + K+QK    EEKKV+R+ L+AYDDE+KEL++RV KLE+M +RN+ EK VYE+AMRKL ETR ALA+AEA  ASASNA+  +EKEKKWLKF
Sbjct:   36 PSNPELLSVQEELLQVIKDVEEGLLHLKRARLLREADSVLHASYHTV-----------EDVKAEPLDPVHVEPEPLEDQCYSVGSKCRFRHVDGRWYNGQIIELVCSDTAKIAFLTPISENMLICKFFLQERCRFGTSCRLSHGVDVSLSSLKNYVPTMWDQSLVGSSIWALSDSNVGIWRKAELESWDNEHRVGQVVFHDGGSSAKLGSEAMTISEYALMSDEEETDSSSEGSDSSDYDEESAEGLGFLESTNLQRGIQTGTAIFATWENHTRGIASKMMANMGYREGMGLGASGQGMLDPIPVKVLPPKQSLDHALES-QKEGIKDNHGKKRSRGGKRKREKKFAAAARAAKAEEETRPDVFTLINNQLAGHNEALN-SESAKKQKSKGSEEKKVNRQDLLAYDDEIKELRIRVEKLEDMANRNKKEKVVYESAMRKLNETRIALAKAEASKASASNAITGREKEKKWLKF 495

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Match: A0A072UVS7_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_3g053700 PE=4 SV=1)

HSP 1 Score: 472.626 bits (1215), Expect = 5.521e-158
Identity = 347/498 (69.68%), Postives = 414/498 (83.13%), Query Frame = -1

Query:  140 MADEEERVXXXXXXXXXXXXXXXXXXXXXXXXXDPFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1633
            M  EEERVLENQLELQL EQR+SL+A+D AL  DP N ++L VHEELV+ IK+ EEGLL+LKRARLL EAD+ L  S     EE K E L+  DVE EPLEE +S+ VGSKCRFRY DGRWY+GQV+ L+ S  AKISFLTPTSENML+CKFFLQQRCRFG+NCRLSHGVDV L+SLK+YAPT+W+PS+ GSSIWAV ++  GIWR AELESW+++   G+VVFRDDGSS +LG + + LSEYA    D +S+ S E+SD S  EEE P+GLGF++ST LQKG+QTET IFAKWENHTRG+ASKMMANMGY+EGMGLG +GQGM++PI VKVLPPK SLDHAL++H+ + + EK+ KKR+RGGKRKREK+FAEA RAAKEEEES PDVFSLIN QLAM  EA N GS KKQQ KGSGE KKVDRK LVAY+++VK+LK++V+K E+M   N+ EK VY+AAM+KL++TRKALAEAEAVHASAS+ VVSKEK+K+WLKF
Sbjct:    1 MGSEEERVLENQLELQLHEQRDSLTAIDHALLLDPTNSELLEVHEELVQAIKDAEEGLLHLKRARLLSEADTVL-CSTDIFAEEEKVEPLDPADVEPEPLEE-KSFSVGSKCRFRYKDGRWYNGQVMQLDNS-VAKISFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVQLTSLKEYAPTIWKPSLAGSSIWAVSNANAGIWRAAELESWDEKAGVGQVVFRDDGSSVKLGAQDMVLSEYAD-MSDIDSDSSLEQSDYSGSEEEEPQGLGFMDSTNLQKGVQTETAIFAKWENHTRGMASKMMANMGYQEGMGLGLTGQGMVDPIPVKVLPPKQSLDHALKSHKVEGNTEKQRKKRTRGGKRKREKRFAEAIRAAKEEEESAPDVFSLINTQLAMHGEASN-GSMKKQQSKGSGEGKKVDRKMLVAYENDVKDLKVQVLKFEQMAEANKREKPVYDAAMKKLVQTRKALAEAEAVHASASDDVVSKEKDKRWLKF 493

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: C3H22_ARATH (Zinc finger CCCH domain-containing protein 22 OS=Arabidopsis thaliana GN=At2g24830 PE=2 SV=1)

HSP 1 Score: 422.165 bits (1084), Expect = 2.840e-140
Identity = 287/481 (59.67%), Postives = 351/481 (72.97%), Query Frame = -1

Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXX----------SPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDE-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQL------AMQSEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P NP++L+VHEEL+  IKE EEGLL+LKRARLL EAD  LN  N  A  +        + +E E  EE +    GSKCRFR++DGRWY+G+++   GS SAKISFLTPTSE+M+ICKFF+QQRCRFG++CR SHG+DVP+SSLK Y  T W+  MVGS IWAV  SK  IWR+AELESW+DEL+ G VVFRDD SSA+LG ++L LSEYAQ++DD+  E   E+   S  + E          SP+G+GFLEST L +G+QT+T +FAKWENHTRG+ASKMMA+MGYREGMGLG SGQG+LNPI VKVLP K SLD+ALE   N E   EK+ KKRSRGGKRKR KKFAEAA+AAK+EEES+PD+FSLIN Q+       + SE+V               +  VDRKALV Y DEV++LKL ++KLE+MV+RN+ +  V EAA R+L E RKALA   A  A+ASNA+VSKE EKKWLKF
Sbjct:   35 PSNPELLSVHEELLSAIKEVEEGLLHLKRARLLEEADIVLNGLNHDAGVK-------PEHLEPEKTEEKKDLD-GSKCRFRHTDGRWYNGRIIGFEGSDSAKISFLTPTSESMMICKFFMQQRCRFGSSCRSSHGLDVPISSLKNYEQTEWKQLMVGSKIWAVSGSKYDIWRKAELESWDDELQVGGVVFRDDKSSAKLGSDSLALSEYAQMTDDDGEEEEEEDEQQSASDSEDSVSSDYDEGSPQGIGFLESTNLPRGVQTDTALFAKWENHTRGIASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRSLDYALEHIRNGECKSEKQKKKRSRGGKRKRGKKFAEAAKAAKQEEESKPDLFSLINEQIFPTRHEKVHSESVK----------NRQNKGPVDRKALVEYQDEVRDLKLEMLKLEQMVNRNKKDLVVSEAATRRLKEVRKALASTLACQAAASNAIVSKENEKKWLKF 497

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: C3H18_ORYSJ (Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica GN=Os02g0793000 PE=2 SV=1)

HSP 1 Score: 410.609 bits (1054), Expect = 1.216e-135
Identity = 265/471 (56.26%), Postives = 329/471 (69.85%), Query Frame = -1

Query:  140 PFNPQILAVHXXXXXXXXXXXEGLLNLKRARLLREADSALNVSNQXXXXXXXXXXXESDDVEVEPLEEDRSYQVGSKCRFRYSDGRWYDGQVVTLNGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXX-----XXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHENDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPDVFSLINNQLAMQ--SEAVNXXXXXXXXXXXXXXXXKVDRKALVAYDDEVKELKLRVVKLEEMVSRNRNEKAVYEAAMRKLIETRKXXXXXXXXXXXXXXXXXSKEKEKKWLKF 1531
            P N  +L VHEEL+  IK+ EEGLL+LKR+RL+++ D     + +   E  +      DDVE EPLE  + + VGSKCRFR+ DGRWY+G V+ L GS  A+ISFLTPTSENM +CKFFLQQRCRFG+NCRLSHG+ +P+ SLK++ PT W+ S+VGSSI A      G+WR AELESW+D+L+ G+VVF+DDGSSA L  ++L++SEYA  SD         E S    D    +E   +GLG LES  L  G+QTET IFAKWE+HTRGVASKMMA MGYREGMGLG SGQGML+PI VKVLPPK SLDHA+   E ++      K+   G +++ +K   +A  A  EEEE    VFS IN+QL  Q  +E     S K    + +G  KK DR++L+AYDDEVKEL+ RV KLEEM+ RNR +KA YEAA +KL +TRKALA+AEA HASA+NAV  KEKEKKWLKF
Sbjct:   39 PSNADLLEVHEELLAAIKDAEEGLLHLKRSRLVKQIDEIF-PNQEPTSEAPEVAVDPPDDVEPEPLEP-QEFSVGSKCRFRHKDGRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSLSISEYADESDEDGEGSSSDEGSDFSEDGDQEDESVHQGLGLLESKNLS-GVQTETAIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGPGKKRSRGGKRKREKKFAEQARAAKAEEEERS--VFSFINSQLVGQDVAEGSAVKSKKDSSGEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASKKLKQTRKALADAEATHASATNAVARKEKEKKWLKF 504

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_HUMAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Homo sapiens GN=ZGPAT PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 7.124e-21
Identity = 70/233 (30.04%), Postives = 104/233 (44.64%), Query Frame = -1

Query:  599 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWN--------DELRTGKVVFRDDGSSAELGIEALTL---------SEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALET 1246
            +GS   ++ +L PT +++  C FFL+ +CRF  NCR SHG  V L  L+ +          GS+  A    + G+W  A +   +        D L   + V   DG    L  EA            S YA++   +  + +   +            L  + S A+  G  T ++ FA WE HTRG+ S+++  MGY  G GLG   +G + PI   VLP   SLD  +ET
Sbjct:  160 DGSAGVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSLDELRPFQDPDLSSLQAGSACLA--KHQDGLWHAARITDVDNGYYTVKFDSLLLREAVVEGDGILPPLRTEATESDSDSDGTGDSSYARVVGSDAVDSAQSSALCPS--------LAVVGSDAVDSG--TCSSAFAGWEVHTRGIGSRLLTKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCVET 380

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_AEDAE (Zinc finger CCCH-type with G patch domain-containing protein OS=Aedes aegypti GN=AAEL004458 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.335e-20
Identity = 66/249 (26.51%), Postives = 120/249 (48.19%), Query Frame = -1

Query:  593 VGSKCR----FRYSDGRWYDGQVVTLNGSG----SAKISFLTPTSENMLICKFFLQQRCRFGAN-CRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 1312
            VGSKC      ++    +++  + +L+ S     +AK+ F+ PT + M+ C +FL+  C+F    CR SHG  + ++ LK+Y    +E  +       +  ++  IW +  +++ + E +T K+   +     EL  E +   E   +   +    S  + ++ D      +    +E + L             WE HT+G+ SK+M  MGY  G GLG+ G+G++ P+S +VLP   SLD+ ++  E
Sbjct:  114 VGSKCSAPHIHKWGSKSYHNALICSLDASDLDDVAAKVLFINPTHQEMVPCAYFLEGDCKFNDEMCRFSHGELISINELKEYREPRFE-LLRKKGCKVLAKNRNRIWSKGTIQTADFETKTCKIQMDEGRHEVELQFENVLPLEGDDVPSSDSESNSDSDEENEDDVVSLQQA-QIIERSLLNPAPDQR---LGDWEKHTKGIGSKIMLKMGYVVGAGLGSKGEGIVVPVSAQVLPQGRSLDYCMQLRE 357

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_ANOGA (Zinc finger CCCH-type with G patch domain-containing protein OS=Anopheles gambiae GN=AGAP002111 PE=3 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 2.934e-19
Identity = 76/262 (29.01%), Postives = 118/262 (45.04%), Query Frame = -1

Query:  590 VGSKCR----FRYSDGRWYDGQVVTLNGS----GSAKISFLTPTSENMLICKFFLQQRCRF-GANCRLSHGVDVPLSSLKKY-APTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGI---EALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIF--------AKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHEN 1312
            VGSKC       +    +++  V +L+       +AK+ F  PT   ML C +FL+  CRF    CR SHG  V L  L+ Y AP        GS   A+      +W +  +   + + +  KV   ++G   +L +   + L L E          +   +E+      +         +  AL+K +  E ++F         +WE HTRG+ SK+M  MGY  G GLG  G+G++ P+S +VLP   SLD+ +E  E 
Sbjct:  137 VGSKCSAPHLHTWGSTAYHNAMVCSLDADDLAHATAKVLFTNPTHREMLPCAYFLEGECRFTDEKCRYSHGEVVRLDQLRDYRAPQFERLRRAGSR--ALVKQSTRLWCKGTVTEVDFDAKRCKVRL-EEGKREQLEVPFEDLLPLDE----------DEDGQEAAEDSESDTDGADEEEADDEALRKALLVEKSLFHPAPDRRLGEWEEHTRGIGSKIMQKMGYIVGTGLGREGEGIVVPVSAQVLPQGRSLDYCMELREQ 385

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_DROAN (Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila ananassae GN=GF15731 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.126e-18
Identity = 73/235 (31.06%), Postives = 113/235 (48.09%), Query Frame = -1

Query:  593 VTLNGSGSA----KISFLTPTSENMLICKFFLQQRCRFG-ANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWA-VPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIF--------AKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 1255
            V +NG G+     ++ F  PT   ML C ++L+  CRF  A CR SHG  V  SS++KY P  +        + A +PD    +W    +   N   +  +V  R DG   +         E   ++ D+E EL+SE+S S +      +     +  A ++    E ++F          WE +TRG+ SK+M  MGY  G GLG+ G+G++ P+S ++LP   SLD  +E  E
Sbjct:  131 VIINGDGALDARLRVLFTNPTHREMLPCSYYLEGECRFDEARCRYSHGALVTGSSIRKYNPPDFHKLSRSCPVLAQLPDR---LWHRGRVLCVNFVEQVCRV--RLDGQDHKERERDFKFEELFPLTTDQEDELTSEDSSSVNDGSSDEEESDMDDLEAARRARMVELSLFTFKPTEKLGAWEEYTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPKGRSLDACMELRE 360

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_RAT (Zinc finger CCCH-type with G patch domain-containing protein OS=Rattus norvegicus GN=Zgpat PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.159e-18
Identity = 66/233 (28.33%), Postives = 97/233 (41.63%), Query Frame = -1

Query:  602 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWN--------DELRTGKVVFRDDGSSAELGIEALTLSE----------YAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALE 1246
            +GS   ++ +L PT +++  C FFL+ +CRF  NCR SHG  V +  L+ +          GS+  A    + G+W  A +   +        D L   + V   D     L  EA   S+          YA++                            +E+  +  G  T ++ FA WE HTRG+ SK++  MGY  G GLG   +G + PI   VLP   SLD   E
Sbjct:  155 DGSACVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQLVSVDELRPFQDPDLSLLQTGSACLA--KHQDGLWHPARITDVDNGYYTVKFDSLLLKEAVVEGDSILPPLRTEATDSSDSDTGDASDSSYARV----------------------------VEANTVDTG--TCSSAFAGWEVHTRGIGSKLLVKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCAE 355

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_MOUSE (Zinc finger CCCH-type with G patch domain-containing protein OS=Mus musculus GN=Zgpat PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.732e-18
Identity = 66/233 (28.33%), Postives = 97/233 (41.63%), Query Frame = -1

Query:  602 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWN--------DELRTGKVVFRDDGSSAELGIEALTLSE----------YAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALE 1246
            +GS   ++ +L PT +++  C FFL+ +CRF  NCR SHG  V +  L+ +          GS+  A    + G+W  A +   +        D L   + V   D     L  EA   S+          YA++                            +E + +  G  T ++ FA WE HTRG+ SK++  MGY  G GLG   +G + PI   VLP   SLD   E
Sbjct:  159 DGSACVRVLYLYPTHKSLKPCPFFLEGKCRFKENCRFSHGQVVSVDELRPFQDPDLSLLQTGSACLA--KHQDGLWHPARITDVDNGYYTVKFDSLLLKEAVVEGDSILPPLRTEATESSDSDTGDASDSSYARV----------------------------VEPSTVDTG--TCSSAFAGWEVHTRGIGSKLLVKMGYEFGKGLGRHAEGRVEPIHAVVLPRGKSLDQCAE 359

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_SALSA (Zinc finger CCCH-type with G patch domain-containing protein OS=Salmo salar GN=zgpat PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.250e-18
Identity = 66/217 (30.41%), Postives = 101/217 (46.54%), Query Frame = -1

Query:  602 KISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGK--------VVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALE 1228
            ++ ++ PT ++M  C FFL+ +CRF  NCR SHG  V +S L+++  +       GSS  A  D   GIW   ++   +++  T K        V+   DG    L  + L     ++            + D+ + E   P+ L   E  A  +     ++ F  WE HTRG+ SK+M  MGY  G GLG + +G + P+   VLP   SLD   E
Sbjct:  165 RVLYVHPTQKSMKPCPFFLEDKCRFADNCRFSHGEVVYVSELREFLESDLTNLQEGSSCLARQDD--GIWYSGKITDIDNDFYTVKFDSALLKNVMVEADGVIPPLREDDLPSCSDSE------------DDDNGEGEAAFPRVLTQEEDWAPSR----SSSAFGGWEAHTRGIGSKLMLKMGYEYGKGLGKTSEGRVEPVLAVVLPKGKSLDQCAE 363

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Match: ZGPAT_XENTR (Zinc finger CCCH-type with G patch domain-containing protein OS=Xenopus tropicalis GN=zgpat PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.034e-17
Identity = 64/218 (29.36%), Postives = 104/218 (47.71%), Query Frame = -1

Query:  593 NGSGSAKISFLTPTSENMLICKFFLQQRCRFGANCRLSHGVDVPLSSLKKYAPTMWEPSMVGSSIWAVPDSKVGIWREAELESWNDELRTGKVVFRDDGSSAELGIEALTLSEYAQIXXXXXXXXXXXXXXXXXXXXXSPKGLGFLESTALQKGIQTETTIFAKWENHTRGVASKMMANMGYREGMGLGASGQGMLNPISVKVLPPKLSLDHALETHE 1246
            +G    ++ +L PT + M  C FFL  +CRF  +CR SHG  V L+ L+ +A        VGS   A      GIW  A +     ++++G    + D   + L  E++  ++            SS++ D  + E+++ +  G+             ++ F  WE HTRG+ SK++A MGY  G GLG + +G + PI   +LP   SLD  +E  +
Sbjct:  156 DGEAGVRVLYLYPTHKAMKPCPFFLDGKCRFDDSCRFSHGQVVALAELQPFAEADVASLAVGSPCLA--QHSDGIWYPARI----TDIKSGFYTVKFD---SLLLKESVLEADSIIPPLRGSDSSSSDDDDDDEEEDDAAEDSGYARVLGAGSAGSAHSSQFGGWEAHTRGIGSKLLARMGYEIGKGLGRNAEGRVEPIQAVLLPKGKSLDQCIEMQQ 364

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9RNS4_RICCO	4.380e-170	71.98	Zinc finger protein, putative OS=Ricinus communis ...	[more]
A0A068VCQ1_COFCA	7.093e-167	71.43	Coffea canephora DH200=94 genomic scaffold, scaffo...	[more]
A0A0B2NVJ9_GLYSO	1.995e-162	68.14	Zinc finger CCCH domain-containing protein 18 OS=G...	[more]
M5XSY5_PRUPE	2.515e-162	72.65	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
I1KYC3_SOYBN	3.764e-162	67.86	Uncharacterized protein OS=Glycine max PE=4 SV=2	[more]
A0A0A0LSP5_CUCSA	5.596e-162	70.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_...	[more]
I1N0J9_SOYBN	5.370e-161	71.08	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0B2PY90_GLYSO	5.370e-161	71.08	Zinc finger CCCH domain-containing protein 18 OS=G...	[more]
B9IL87_POPTR	1.247e-159	68.08	Zinc finger family protein OS=Populus trichocarpa ...	[more]
A0A072UVS7_MEDTR	5.521e-158	69.68	Uncharacterized protein OS=Medicago truncatula GN=...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0008189 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
C3H22_ARATH	2.840e-140	59.67	Zinc finger CCCH domain-containing protein 22 OS=A...	[more]
C3H18_ORYSJ	1.216e-135	56.26	Zinc finger CCCH domain-containing protein 18 OS=O...	[more]
ZGPAT_HUMAN	7.124e-21	30.04	Zinc finger CCCH-type with G patch domain-containi...	[more]
ZGPAT_AEDAE	1.335e-20	26.51	Zinc finger CCCH-type with G patch domain-containi...	[more]
ZGPAT_ANOGA	2.934e-19	29.01	Zinc finger CCCH-type with G patch domain-containi...	[more]
ZGPAT_DROAN	1.126e-18	31.06	Zinc finger CCCH-type with G patch domain-containi...	[more]
ZGPAT_RAT	4.159e-18	28.33	Zinc finger CCCH-type with G patch domain-containi...	[more]
ZGPAT_MOUSE	4.732e-18	28.33	Zinc finger CCCH-type with G patch domain-containi...	[more]
ZGPAT_SALSA	5.250e-18	30.41	Zinc finger CCCH-type with G patch domain-containi...	[more]
ZGPAT_XENTR	2.034e-17	29.36	Zinc finger CCCH-type with G patch domain-containi...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..267
None	No IPR available	COILS	Coil	Coil	coord: 427..454
None	No IPR available	COILS	Coil	Coil	coord: 1..30
None	No IPR available	COILS	Coil	Coil	coord: 44..64
None	No IPR available	COILS	Coil	Coil	coord: 458..478
None	No IPR available	GENE3D	2.30.30.140		coord: 106..139 e-value: 8.6E-5 score: 21.7
None	No IPR available	PANTHER	PTHR23329	TUFTELIN-INTERACTING PROTEIN 11-RELATED	coord: 59..492
None	No IPR available	PANTHER	PTHR23329:SF2	ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN	coord: 59..492
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 296..342 e-value: 2.3E-14 score: 63.7
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 298..339 e-value: 8.4E-13 score: 47.9
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 298..344 score: 13.143
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 144..170 e-value: 1.0E-4 score: 31.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 144..171 score: 14.164
IPR000571	Zinc finger, CCCH-type	SUPERFAMILY	90229	CCCH zinc finger	coord: 145..169

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0008189 ID=g.arboreum_cottongen_reftransV1_0008189; Name=g.arboreum_cottongen_reftransV1_0008189; organism=Gossypium arboreum; type=contig; length=1642bp
AAAAAAAGTCCCAACAGAAAAGGAGAGAAGAAGCCAAATCTAATTTTAGT
TCATTTCTTTCCCTTTTTTATGGGGTAAAATCTATTACCAAACAATGCAT
AATTTGTAACTAGTCCAACATAAATATTACATAATATCAAAACTTTAGCC
ACTTTTTCTCTTTTTCTTTGCTAACGACTGCATTTGATGCTGAGGCATGA
ACTGCTTCAGCCTCCGCCAAAGCCTTACGAGTCTCGATTAATTTCCTCAT
GGCAGCCTCGTAAACAGCTTTCTCATTTCTGTTTCTGCTTACCATTTCCT
CGAGCTTTACAACTCGTAACTTTAGTTCCTTCACTTCATCATCATAAGCA
ACCAATGCCTTTCTATCAACTTTCTTCTCCTCTCCTGAACCTTTCTTTTG
TTGTTTCTTTGTTGATCCACCATTTACAGCCTCACTTTGCATTGCAAGTT
GGTTGTTGATGAGGCTAAAAACATCTGGTCTTGATTCCTCTTCTTCTTTA
GCAGCCCGAGCGGCTTCAGCGAATTTCTTCTCACGCTTTCTCTTGCCACC
TCTGCTTCGTTTCTTCCCTTTTTTCTCTTTATCCTCATCGTTCTCATGAG
TCTCCAGAGCATGATCAAGTGATAGCTTAGGAGGAAGGACTTTAACTGAG
ATCGGATTTAACATCCCCTGGCCAGATGCACCTAAACCCATCCCTTCACG
GTAACCCATATTGGCCATCATCTTAGAAGCTACACCCCTGGTATGATTTT
CCCACTTAGCAAAGATGGTAGTTTCTGTCTGGATACCTTTCTGTAGAGCA
GTGCTTTCAAGAAAACCTAAACCCTTTGGGCTCTCCTCTTCGTAGTCACT
AGAATCAGATTCTTCAGAGCTTAGTTCACTTTCTTCATCATCACTTATTT
GTGCATATTCAGATAATGTCAAAGCTTCTATCCCAAGCTCTGCAGAGCTT
CCATCATCCCGGAAAACAACCTTCCCCGTTCTGAGTTCATCATTCCATGA
TTCAAGTTCAGCTTCCCTCCAGATGCCAACTTTACTATCAGGGACTGCCC
AAATACTGGACCCAACCATCGATGGCTCCCACATGGTTGGAGCATACTTC
TTCAGCGAAGATAATGGGACATCCACTCCATGCGATAAGCGGCAATTAGC
ACCAAATCGACATCTTTGTTGCAGAAAGAACTTGCATATCAACATATTTT
CTGAAGTAGGTGTGAGGAAAGATATTTTCGCCGAACCAGAACCGTTCAAT
GTGACAACCTGACCATCATACCACCGGCCGTCACTGTAACGGAATCGACA
TTTCGACCCGACCTGATAACTCCGATCTTCCTCCAATGGTTCAACTTCCA
CATCATCTGATTCAAGAGCCTCCGCTTTAACCTCCTCAACCGCTGCTTGA
TTCGAAACATTTAACGCTGAATCAGCTTCTCGAAGTAAACGCGCGCGCTT
AAGATTAAGAAGCCCCTCCTCTGTCTCTTTGATTACCTCAACAAGCTCCT
CGTGAACCGCGAGGATCTGGGGATTGAAAGGATCAGAAGCGAGAGCATCG
TCTAAGGCAGAGAGGGATTCTCTTTGCTCTTTCAATTGAAGCTCCAACTG
GTTCTCTAGAACTCTCTCTTCTTCGTCTGCCATTGTTGTTTT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000467	G_patch_dom
IPR000571	Znf_CCCH

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0046872	metal ion binding

Search form

g.arboreum_cottongen_reftransV1_0008189, g.arboreum_cottongen_reftransV1_0008189 (contig) Gossypium arboreum

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