g.arboreum_cottongen_reftransV1_0000424, g.arboreum_cottongen_reftransV1_0000424 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: I1KL20_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.016e-51 Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = -3 Query: 113 MGFRFAQGLVLLQAI-ACVVEVSLANKGWD---SHT--------YPYNHSSA-PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 M + G+++L I A + VS+ANK W ++T +P N + PK+ VGGS+HW +G NYTDW+ KSAPFY NDTLVFKYD P+ T+FPHSV + + SFL CD++KAK++AN QG G GF+FVL + KP+YF CGERNGFHC G MKFAV P++RP Sbjct: 1 MALKLGHGVMILVIISASMFSVSMANKDWSFGFNYTDWWSRFGNHPQNKTQQQPKQIVVGGSEHWHYGFNYTDWAFKSAPFYLNDTLVFKYDAPNATSFPHSVYMFKSFGSFLKCDIEKAKMLANPMQGTGEGFKFVL---KRWKPHYFACGERNGFHCNNGTMKFAVMPMIRP 171
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0B2NV87_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_046789 PE=4 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.016e-51 Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = -3 Query: 113 MGFRFAQGLVLLQAI-ACVVEVSLANKGWD---SHT--------YPYNHSSA-PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 M + G+++L I A + VS+ANK W ++T +P N + PK+ VGGS+HW +G NYTDW+ KSAPFY NDTLVFKYD P+ T+FPHSV + + SFL CD++KAK++AN QG G GF+FVL + KP+YF CGERNGFHC G MKFAV P++RP Sbjct: 1 MALKLGHGVMILVIISASMFSVSMANKDWSFGFNYTDWWSRFGNHPQNKTQQQPKQIVVGGSEHWHYGFNYTDWAFKSAPFYLNDTLVFKYDAPNATSFPHSVYMFKSFGSFLKCDIEKAKMLANPMQGTGEGFKFVL---KRWKPHYFACGERNGFHCNNGTMKFAVMPMIRP 171
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: I1KL21_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.234e-51 Identity = 88/174 (50.57%), Postives = 118/174 (67.82%), Query Frame = -3 Query: 113 MGFRFAQGLVLLQAI-ACVVEVSLANKGW-------DSHTYPYNHSS-----APKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MG +F G+++L I A + +S+ANK W D + NH+ P++ VGGS+HW +G NYTDW+ K+APFY NDTLVFKYD P+ T+FPHSV ++ + SF+ CD++KAK++AN TQG G F+FVL + +P+YF CGERNGFHC G MKFAV P+LRP Sbjct: 1 MGAKFGHGVMILFVISASMFSMSMANKDWSFGFNYTDWWSRFGNHAQNKTQQPPRQILVGGSEHWHYGFNYTDWAFKNAPFYLNDTLVFKYDAPNATSFPHSVYMIKSFGSFMKCDIEKAKMLANPTQGTGESFKFVL---KRWQPHYFACGERNGFHCNNGTMKFAVMPMLRP 171
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: B9HRX0_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0009s10920g PE=4 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 2.342e-51 Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = -3 Query: 110 AQGLVLLQAIACVVEVSLANK--GWDSHTYPY-------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNT-TFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRPR 580 AQ L+LL + A + +S+A++ G+++ + Y N ++AP + VGGSQ+W FG+NY DW+LK+ PFYFNDTLVFKYDPPS+T T PHSV LLPNL SFL CDL +AKL+A++TQGGG+GFEFVL +P+YF CG GFHC G MKF V P+ R R Sbjct: 7 AQVLILLLS-ASMWAISMASRQYGFNNTDWSYKRRPCRQNSTAAPNKIVVGGSQNWTFGINYADWALKNGPFYFNDTLVFKYDPPSDTNTHPHSVYLLPNLWSFLKCDLSRAKLVASETQGGGDGFEFVL---KSWQPHYFACGGGAGFHCNNGTMKFFVMPMFRRR 169
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: M0SZH6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 4.008e-51 Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = -3 Query: 116 SSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 484 +S R VG S HW FG NYT+W+ KS+PFY NDTLVF YDPP++TTFPHSV L+ NLRSF+ CDL+KAKL+AN QGGG+GFEFVL K+KP+YF CGERNG HC VG+MKFAV PL R Sbjct: 25 TSLAARVIVGDSAHWTFGYNYTEWANKSSPFYQNDTLVFMYDPPNSTTFPHSVYLMKNLRSFIACDLRKAKLVANVLQGGGDGFEFVL---KKRKPHYFACGERNGIHCSVGLMKFAVLPLRR 144 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000424 ID=g.arboreum_cottongen_reftransV1_0000424; Name=g.arboreum_cottongen_reftransV1_0000424; organism=Gossypium arboreum; type=contig; length=612bpback to top |