g.arboreum_cottongen_reftransV1_0000424, g.arboreum_cottongen_reftransV1_0000424 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000424
Unique Nameg.arboreum_cottongen_reftransV1_0000424
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length612
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr6chromosomeg.arboreum_cottongen_reftransV1_0000424:1..612 .
Chr6:65991354..65992046 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: I1KL20_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.016e-51
Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = -3
Query:  113 MGFRFAQGLVLLQAI-ACVVEVSLANKGWD---SHT--------YPYNHSSA-PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            M  +   G+++L  I A +  VS+ANK W    ++T        +P N +   PK+  VGGS+HW +G NYTDW+ KSAPFY NDTLVFKYD P+ T+FPHSV +  +  SFL CD++KAK++AN  QG G GF+FVL    + KP+YF CGERNGFHC  G MKFAV P++RP
Sbjct:    1 MALKLGHGVMILVIISASMFSVSMANKDWSFGFNYTDWWSRFGNHPQNKTQQQPKQIVVGGSEHWHYGFNYTDWAFKSAPFYLNDTLVFKYDAPNATSFPHSVYMFKSFGSFLKCDIEKAKMLANPMQGTGEGFKFVL---KRWKPHYFACGERNGFHCNNGTMKFAVMPMIRP 171          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A0B2NV87_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_046789 PE=4 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.016e-51
Identity = 90/174 (51.72%), Postives = 117/174 (67.24%), Query Frame = -3
Query:  113 MGFRFAQGLVLLQAI-ACVVEVSLANKGWD---SHT--------YPYNHSSA-PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            M  +   G+++L  I A +  VS+ANK W    ++T        +P N +   PK+  VGGS+HW +G NYTDW+ KSAPFY NDTLVFKYD P+ T+FPHSV +  +  SFL CD++KAK++AN  QG G GF+FVL    + KP+YF CGERNGFHC  G MKFAV P++RP
Sbjct:    1 MALKLGHGVMILVIISASMFSVSMANKDWSFGFNYTDWWSRFGNHPQNKTQQQPKQIVVGGSEHWHYGFNYTDWAFKSAPFYLNDTLVFKYDAPNATSFPHSVYMFKSFGSFLKCDIEKAKMLANPMQGTGEGFKFVL---KRWKPHYFACGERNGFHCNNGTMKFAVMPMIRP 171          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: I1KL21_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.234e-51
Identity = 88/174 (50.57%), Postives = 118/174 (67.82%), Query Frame = -3
Query:  113 MGFRFAQGLVLLQAI-ACVVEVSLANKGW-------DSHTYPYNHSS-----APKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MG +F  G+++L  I A +  +S+ANK W       D  +   NH+       P++  VGGS+HW +G NYTDW+ K+APFY NDTLVFKYD P+ T+FPHSV ++ +  SF+ CD++KAK++AN TQG G  F+FVL    + +P+YF CGERNGFHC  G MKFAV P+LRP
Sbjct:    1 MGAKFGHGVMILFVISASMFSMSMANKDWSFGFNYTDWWSRFGNHAQNKTQQPPRQILVGGSEHWHYGFNYTDWAFKNAPFYLNDTLVFKYDAPNATSFPHSVYMIKSFGSFMKCDIEKAKMLANPTQGTGESFKFVL---KRWQPHYFACGERNGFHCNNGTMKFAVMPMLRP 171          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: B9HRX0_POPTR (Glycine-rich family protein OS=Populus trichocarpa GN=POPTR_0009s10920g PE=4 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.342e-51
Identity = 92/167 (55.09%), Postives = 119/167 (71.26%), Query Frame = -3
Query:  110 AQGLVLLQAIACVVEVSLANK--GWDSHTYPY-------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNT-TFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRPR 580
            AQ L+LL + A +  +S+A++  G+++  + Y       N ++AP +  VGGSQ+W FG+NY DW+LK+ PFYFNDTLVFKYDPPS+T T PHSV LLPNL SFL CDL +AKL+A++TQGGG+GFEFVL      +P+YF CG   GFHC  G MKF V P+ R R
Sbjct:    7 AQVLILLLS-ASMWAISMASRQYGFNNTDWSYKRRPCRQNSTAAPNKIVVGGSQNWTFGINYADWALKNGPFYFNDTLVFKYDPPSDTNTHPHSVYLLPNLWSFLKCDLSRAKLVASETQGGGDGFEFVL---KSWQPHYFACGGGAGFHCNNGTMKFFVMPMFRRR 169          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: M0SZH6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 4.008e-51
Identity = 83/123 (67.48%), Postives = 97/123 (78.86%), Query Frame = -3
Query:  116 SSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 484
            +S   R  VG S HW FG NYT+W+ KS+PFY NDTLVF YDPP++TTFPHSV L+ NLRSF+ CDL+KAKL+AN  QGGG+GFEFVL    K+KP+YF CGERNG HC VG+MKFAV PL R
Sbjct:   25 TSLAARVIVGDSAHWTFGYNYTEWANKSSPFYQNDTLVFMYDPPNSTTFPHSVYLMKNLRSFIACDLRKAKLVANVLQGGGDGFEFVL---KKRKPHYFACGERNGIHCSVGLMKFAVLPLRR 144          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
I1KL20_SOYBN1.016e-5151.72Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A0B2NV87_GLYSO1.016e-5151.72Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
I1KL21_SOYBN1.234e-5150.57Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
B9HRX0_POPTR2.342e-5155.09Glycine-rich family protein OS=Populus trichocarpa... [more]
M0SZH6_MUSAM4.008e-5167.48Uncharacterized protein OS=Musa acuminata subsp. m... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003245Phytocyanin domainPFAMPF02298Cu_bind_likecoord: 56..153
e-value: 7.1E-5
score: 22.6
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 46..163
score: 22.468
IPR008972CupredoxinGENE3D2.60.40.420coord: 46..161
e-value: 7.6E-20
score: 70.6
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 46..161
NoneNo IPR availablePANTHERPTHR34052FAMILY NOT NAMEDcoord: 36..168
NoneNo IPR availablePANTHERPTHR34052:SF1AUXIN RESPONSE FACTOR 30-RELATEDcoord: 36..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..168
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.645

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000424 ID=g.arboreum_cottongen_reftransV1_0000424; Name=g.arboreum_cottongen_reftransV1_0000424; organism=Gossypium arboreum; type=contig; length=612bp
GGATTACTGAATTCCAATCTCTAATCTTATTGTGAATAAAATGATACAGA
ACATAATAAAGGCAGGCACTGCGTCTTCCCTGGATTCTGGTGGTGTTCCA
TCAGAAGGGCCGAGGACGGAGGAGCGGCGCCACAGCGAATTTCATAATCC
CAACCTTGCAGTGAAAGCCATTGCGCTCACCACAAACGAAGTAGTAGGGC
TTCTTCTTATTCTTCTTCTTCAAAACAAACTCAAACCCATTTCCGCCACC
TTGAGTTTGGTTGGCGATCAGCTTAGCTTTCTTCAAGTCGCAGTTAAGGA
AGCTCCTGAGGTTGGGTAGCAATGAGACACTGTGAGGAAACGTGGTGTTG
CTTGGTGGATCATATTTGAACACAAGAGTGTCATTGAAGTAGAAGGGAGC
GCTTTTGAGTGACCAGTCGGTGTAGTTGACCCCAAATTGCCAATGCTGTG
ATCCCCCAACAGTGAACCTTTTGGGGGCACTGCTATGATTGTAGGGATAA
GTATGGGAATCCCAACCCTTGTTAGCCAAGCTTACTTCCACTACGCAGGC
AATAGCCTGCAGTAGAACAAGCCCTTGAGCAAACCTAAACCCCATTTTGT
CAATCAAGTTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003245Phytocyanin_dom
IPR008972Cupredoxin
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity