g.arboreum_cottongen_reftransV1_0000424, g.arboreum_cottongen_reftransV1_0000424 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: D7TPN4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00990 PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 3.910e-54 Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = -3 Query: 113 MGFRFAQGLV-LLQAIACVVEVSLANKG-----------------WDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MGF QG+V LL IA ++ V +AN+ W P+ N++ PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN SFL CDL +AK +A QGG GFEFVL P+YF CGE NG HCK G+MKF+V PL RP Sbjct: 1 MGFTSGQGIVTLLVLIASLLAVGMANRPIAGKPANHWNSGFNHSIWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: V4RPI0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029852mg PE=4 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 4.471e-54 Identity = 90/178 (50.56%), Postives = 118/178 (66.29%), Query Frame = -3 Query: 116 MGFRFAQGLVLLQAIACVVEVSLANKGW-----DSHTYPY-------------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595 M F A L+L+ + A ++ VSLAN+GW +++ +P+ + P + VGGS +W FG NY+ W+ +++PFY ND LVFKYDPP++T FPHSV LPNL S+L CDL +AK+IAN TQGGG+GFEFVL + +PYYF CGER GFHC+ G MKF V PLLR Sbjct: 1 MAFTSAHSLILILSAASMLTVSLANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNSPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVL---KRWQPYYFACGERGGFHCREGRMKFMVLPLLR 175
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BRZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035938 PE=4 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 1.325e-53 Identity = 94/181 (51.93%), Postives = 115/181 (63.54%), Query Frame = -3 Query: 113 MGFRFAQGLV-LLQAIACVVEVSLANK-----------------GWDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MGF QG+V LL A ++ V +AN+ W P+ N++ PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN SFL CDL +AK +A QGG GFEFVL P+YF CGE NG HCK G+MKF+V PL RP Sbjct: 1 MGFTSGQGVVTLLVLTASLLAVGMANRPIAGKPANHWNSGFNHSSWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BS01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035940 PE=4 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 1.429e-53 Identity = 94/181 (51.93%), Postives = 115/181 (63.54%), Query Frame = -3 Query: 113 MGFRFAQGLV-LLQAIACVVEVSLANK-----------------GWDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MGF QG+V LL A ++ V +AN+ W P+ N++ PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN SFL CDL +AK +A QGG GFEFVL P+YF CGE NG HCK G+MKF+V PL RP Sbjct: 1 MGFTSGQGVVTLLVLTASLLAVGMANRPIEGKPANHWNSGFNHSSWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: K7N0N8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.685e-53 Identity = 93/174 (53.45%), Postives = 119/174 (68.39%), Query Frame = -3 Query: 113 MGFRFAQGLVLLQAI-ACVVEVSLANKGWD---SHT--------YPYNHSSA-PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MG +F G+V+L I A + VS+ANK W ++T +P N + P++ VGGS+HW +G NYTDW+ K+APFY NDTLVFKYD P+ T+FPHSV + + SFL CD+KKAK++AN TQG G GF+FVL K +P+YF CGERNGFHC G MKFAV P+ RP Sbjct: 37 MGLKFTHGVVILIVISASMFSVSMANKDWSFGFNYTDWWSRFGNHPQNKTQQQPRQILVGGSEHWHYGFNYTDWAFKTAPFYLNDTLVFKYDAPNATSFPHSVYMFKSFGSFLKCDIKKAKMLANPTQGSGEGFKFVL---KKWQPHYFACGERNGFHCNNGTMKFAVMPMFRP 207
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: D7TPN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01010 PE=4 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.820e-53 Identity = 94/181 (51.93%), Postives = 115/181 (63.54%), Query Frame = -3 Query: 113 MGFRFAQGLV-LLQAIACVVEVSLANKG-----------------WDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MGF QG+V LL A ++ V +AN+ W P+ N++ PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN SFL CDL +AK +A QGG GFEFVL P+YF CGE NG HCK G+MKF+V PL RP Sbjct: 1 MGFTSGQGVVTLLVLTASLLAVGMANRPIAGKPANHWNSGFNHSIWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A061E7J1_THECC (CUB and sushi domain-containing protein 3, putative OS=Theobroma cacao GN=TCM_007010 PE=4 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 5.313e-53 Identity = 90/179 (50.28%), Postives = 117/179 (65.36%), Query Frame = -3 Query: 116 MGFRFAQGLVLLQAIACVVEVSLANKGWDSHTYPY-------------------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595 MGF A GL+L+ A ++ S+ +K W H+ Y N + P + VGGS++W +G NY++W+ ++APFYFNDTLVFKYDPPSN TFPHSV L + S+LNCDLK+AK+IA+ TQGGG+GFEFVL + + +YF CGERNG HCK G M+F V PLLR Sbjct: 1 MGFTHAHGLILVLIAASMLGGSMGSKDW-GHSSNYTGWGWGWGSGWGSHNNQTLNQTEGPNKIIVGGSENWHYGFNYSEWAFQNAPFYFNDTLVFKYDPPSNNTFPHSVYLFHDFWSYLNCDLKRAKMIASPTQGGGDGFEFVL---KRWRSHYFACGERNGVHCKAGGMRFMVVPLLR 175
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BRZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035936 PE=4 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 2.496e-52 Identity = 93/181 (51.38%), Postives = 114/181 (62.98%), Query Frame = -3 Query: 113 MGFRFAQGLV-LLQAIACVVEVSLANK-----------------GWDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MGF QG+V LL A ++ V +AN+ W P+ N++ PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTF HSV LLPN SFL CDL +AK +A QGG GFEFVL P+YF CGE NG HCK G+MKF+V PL RP Sbjct: 1 MGFTSGQGVVTLLVLTASLLAVGMANRPIAGKPANHWNSGFNHSSWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFXHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: V4UAL1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029789mg PE=4 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 2.988e-52 Identity = 88/177 (49.72%), Postives = 115/177 (64.97%), Query Frame = -3 Query: 116 MGFRFAQGLVLLQAIACVVEVSLANKGW-----DSHTYPYNHSS------------APKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595 M F+ A L+++ + A ++ V AN+GW +++ +P+ H + PK+ VGGS +W+FG NY+ W+ K+APFY ND LVFKYD P++T FPHSV LPNL S+L CDL +AK+IAN TQG G GFEFVL + PYYF CGER G HC+ G MKF V PLLR Sbjct: 1 MAFKAAHSLLVILSAASMLAVCSANRGWSNGFNNTYQWPWGHKNESHNSNNTNDDDGPKKIIVGGSDNWRFGFNYSVWAFKNAPFYVNDVLVFKYDAPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANATQGDGEGFEFVL---KRWLPYYFACGERGGLHCREGRMKFMVLPLLR 174
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BS00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035939 PE=4 SV=1) HSP 1 Score: 177.178 bits (448), Expect = 4.157e-52 Identity = 95/184 (51.63%), Postives = 117/184 (63.59%), Query Frame = -3 Query: 113 MGFRFAQG-LVLLQAIACVVEVSLANKG-----------------WD-SHTYPY----NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595 MGF AQG L LL A ++ V A++ WD + +P+ N++ PK+F VGGS HW++G NYTDW+L + PFY NDTLVFKYDPPS TTFPHSV LLPNLRSF+ CDL +A+ +A QGGG GFEFVL P+YF CGE +G HCK G+MKF V PL+ P Sbjct: 1 MGFTCAQGVLTLLVLTASMLAVGTASRPIAGRPANYWNFGFNHSLWDPRNDHPFHPNNNNTRPPKKFIVGGSDHWRYGFNYTDWALNNGPFYVNDTLVFKYDPPSKTTFPHSVYLLPNLRSFMTCDLSRAEQVATVAQGGGEGFEFVL---KNWWPHYFACGEHDGLHCKEGMMKFFVMPLIGP 181 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0000424 ID=g.arboreum_cottongen_reftransV1_0000424; Name=g.arboreum_cottongen_reftransV1_0000424; organism=Gossypium arboreum; type=contig; length=612bpback to top |