g.arboreum_cottongen_reftransV1_0000424, g.arboreum_cottongen_reftransV1_0000424 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0000424
Unique Nameg.arboreum_cottongen_reftransV1_0000424
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length612
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr6chromosomeg.arboreum_cottongen_reftransV1_0000424:1..612 .
Chr6:65991354..65992046 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: D7TPN4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g00990 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.910e-54
Identity = 95/181 (52.49%), Postives = 116/181 (64.09%), Query Frame = -3
Query:  113 MGFRFAQGLV-LLQAIACVVEVSLANKG-----------------WDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MGF   QG+V LL  IA ++ V +AN+                  W     P+  N++  PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN  SFL CDL +AK +A   QGG  GFEFVL       P+YF CGE NG HCK G+MKF+V PL RP
Sbjct:    1 MGFTSGQGIVTLLVLIASLLAVGMANRPIAGKPANHWNSGFNHSIWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: V4RPI0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029852mg PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.471e-54
Identity = 90/178 (50.56%), Postives = 118/178 (66.29%), Query Frame = -3
Query:  116 MGFRFAQGLVLLQAIACVVEVSLANKGW-----DSHTYPY-------------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595
            M F  A  L+L+ + A ++ VSLAN+GW     +++ +P+             +    P +  VGGS +W FG NY+ W+ +++PFY ND LVFKYDPP++T FPHSV  LPNL S+L CDL +AK+IAN TQGGG+GFEFVL    + +PYYF CGER GFHC+ G MKF V PLLR
Sbjct:    1 MAFTSAHSLILILSAASMLTVSLANRGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWHFGFNYSVWAFQNSPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVL---KRWQPYYFACGERGGFHCREGRMKFMVLPLLR 175          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BRZ9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035938 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.325e-53
Identity = 94/181 (51.93%), Postives = 115/181 (63.54%), Query Frame = -3
Query:  113 MGFRFAQGLV-LLQAIACVVEVSLANK-----------------GWDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MGF   QG+V LL   A ++ V +AN+                  W     P+  N++  PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN  SFL CDL +AK +A   QGG  GFEFVL       P+YF CGE NG HCK G+MKF+V PL RP
Sbjct:    1 MGFTSGQGVVTLLVLTASLLAVGMANRPIAGKPANHWNSGFNHSSWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BS01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035940 PE=4 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.429e-53
Identity = 94/181 (51.93%), Postives = 115/181 (63.54%), Query Frame = -3
Query:  113 MGFRFAQGLV-LLQAIACVVEVSLANK-----------------GWDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MGF   QG+V LL   A ++ V +AN+                  W     P+  N++  PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN  SFL CDL +AK +A   QGG  GFEFVL       P+YF CGE NG HCK G+MKF+V PL RP
Sbjct:    1 MGFTSGQGVVTLLVLTASLLAVGMANRPIEGKPANHWNSGFNHSSWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: K7N0N8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.685e-53
Identity = 93/174 (53.45%), Postives = 119/174 (68.39%), Query Frame = -3
Query:  113 MGFRFAQGLVLLQAI-ACVVEVSLANKGWD---SHT--------YPYNHSSA-PKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MG +F  G+V+L  I A +  VS+ANK W    ++T        +P N +   P++  VGGS+HW +G NYTDW+ K+APFY NDTLVFKYD P+ T+FPHSV +  +  SFL CD+KKAK++AN TQG G GF+FVL    K +P+YF CGERNGFHC  G MKFAV P+ RP
Sbjct:   37 MGLKFTHGVVILIVISASMFSVSMANKDWSFGFNYTDWWSRFGNHPQNKTQQQPRQILVGGSEHWHYGFNYTDWAFKTAPFYLNDTLVFKYDAPNATSFPHSVYMFKSFGSFLKCDIKKAKMLANPTQGSGEGFKFVL---KKWQPHYFACGERNGFHCNNGTMKFAVMPMFRP 207          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: D7TPN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0063g01010 PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.820e-53
Identity = 94/181 (51.93%), Postives = 115/181 (63.54%), Query Frame = -3
Query:  113 MGFRFAQGLV-LLQAIACVVEVSLANKG-----------------WDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MGF   QG+V LL   A ++ V +AN+                  W     P+  N++  PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTFPHSV LLPN  SFL CDL +AK +A   QGG  GFEFVL       P+YF CGE NG HCK G+MKF+V PL RP
Sbjct:    1 MGFTSGQGVVTLLVLTASLLAVGMANRPIAGKPANHWNSGFNHSIWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFPHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A0A061E7J1_THECC (CUB and sushi domain-containing protein 3, putative OS=Theobroma cacao GN=TCM_007010 PE=4 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 5.313e-53
Identity = 90/179 (50.28%), Postives = 117/179 (65.36%), Query Frame = -3
Query:  116 MGFRFAQGLVLLQAIACVVEVSLANKGWDSHTYPY-------------------NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595
            MGF  A GL+L+   A ++  S+ +K W  H+  Y                   N +  P +  VGGS++W +G NY++W+ ++APFYFNDTLVFKYDPPSN TFPHSV L  +  S+LNCDLK+AK+IA+ TQGGG+GFEFVL    + + +YF CGERNG HCK G M+F V PLLR
Sbjct:    1 MGFTHAHGLILVLIAASMLGGSMGSKDW-GHSSNYTGWGWGWGSGWGSHNNQTLNQTEGPNKIIVGGSENWHYGFNYSEWAFQNAPFYFNDTLVFKYDPPSNNTFPHSVYLFHDFWSYLNCDLKRAKMIASPTQGGGDGFEFVL---KRWRSHYFACGERNGVHCKAGGMRFMVVPLLR 175          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BRZ7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035936 PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.496e-52
Identity = 93/181 (51.38%), Postives = 114/181 (62.98%), Query Frame = -3
Query:  113 MGFRFAQGLV-LLQAIACVVEVSLANK-----------------GWDSHTYPY--NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MGF   QG+V LL   A ++ V +AN+                  W     P+  N++  PK+F VGGS+ W++G NYTDW+LK+ PFY NDTLVFKYDPP++TTF HSV LLPN  SFL CDL +AK +A   QGG  GFEFVL       P+YF CGE NG HCK G+MKF+V PL RP
Sbjct:    1 MGFTSGQGVVTLLVLTASLLAVGMANRPIAGKPANHWNSGFNHSSWGPRNNPFHPNNTRPPKKFIVGGSERWRYGFNYTDWALKNGPFYINDTLVFKYDPPNSTTFXHSVYLLPNFGSFLTCDLSRAKQVATVAQGGSKGFEFVL---KNLWPHYFACGEHNGLHCKEGMMKFSVMPLFRP 178          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: V4UAL1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029789mg PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.988e-52
Identity = 88/177 (49.72%), Postives = 115/177 (64.97%), Query Frame = -3
Query:  116 MGFRFAQGLVLLQAIACVVEVSLANKGW-----DSHTYPYNHSS------------APKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLR 595
            M F+ A  L+++ + A ++ V  AN+GW     +++ +P+ H +             PK+  VGGS +W+FG NY+ W+ K+APFY ND LVFKYD P++T FPHSV  LPNL S+L CDL +AK+IAN TQG G GFEFVL    +  PYYF CGER G HC+ G MKF V PLLR
Sbjct:    1 MAFKAAHSLLVILSAASMLAVCSANRGWSNGFNNTYQWPWGHKNESHNSNNTNDDDGPKKIIVGGSDNWRFGFNYSVWAFKNAPFYVNDVLVFKYDAPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANATQGDGEGFEFVL---KRWLPYYFACGERGGLHCREGRMKFMVLPLLR 174          
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Match: A5BS00_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035939 PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.157e-52
Identity = 95/184 (51.63%), Postives = 117/184 (63.59%), Query Frame = -3
Query:  113 MGFRFAQG-LVLLQAIACVVEVSLANKG-----------------WD-SHTYPY----NHSSAPKRFTVGGSQHWQFGVNYTDWSLKSAPFYFNDTLVFKYDPPSNTTFPHSVSLLPNLRSFLNCDLKKAKLIANQTQGGGNGFEFVLXXXXXXKPYYFVCGERNGFHCKVGIMKFAVAPLLRP 595
            MGF  AQG L LL   A ++ V  A++                  WD  + +P+    N++  PK+F VGGS HW++G NYTDW+L + PFY NDTLVFKYDPPS TTFPHSV LLPNLRSF+ CDL +A+ +A   QGGG GFEFVL       P+YF CGE +G HCK G+MKF V PL+ P
Sbjct:    1 MGFTCAQGVLTLLVLTASMLAVGTASRPIAGRPANYWNFGFNHSLWDPRNDHPFHPNNNNTRPPKKFIVGGSDHWRYGFNYTDWALNNGPFYVNDTLVFKYDPPSKTTFPHSVYLLPNLRSFMTCDLSRAEQVATVAQGGGEGFEFVL---KNWWPHYFACGEHDGLHCKEGMMKFFVMPLIGP 181          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7TPN4_VITVI3.910e-5452.49Putative uncharacterized protein OS=Vitis vinifera... [more]
V4RPI0_9ROSI4.471e-5450.56Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A5BRZ9_VITVI1.325e-5351.93Putative uncharacterized protein OS=Vitis vinifera... [more]
A5BS01_VITVI1.429e-5351.93Putative uncharacterized protein OS=Vitis vinifera... [more]
K7N0N8_SOYBN1.685e-5353.45Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
D7TPN6_VITVI2.820e-5351.93Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A061E7J1_THECC5.313e-5350.28CUB and sushi domain-containing protein 3, putativ... [more]
A5BRZ7_VITVI2.496e-5251.38Putative uncharacterized protein OS=Vitis vinifera... [more]
V4UAL1_9ROSI2.988e-5249.72Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A5BS00_VITVI4.157e-5251.63Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0000424 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003245Phytocyanin domainPFAMPF02298Cu_bind_likecoord: 56..153
e-value: 7.1E-5
score: 22.6
IPR003245Phytocyanin domainPROSITEPS51485PHYTOCYANINcoord: 46..163
score: 22.468
IPR008972CupredoxinGENE3D2.60.40.420coord: 46..161
e-value: 7.6E-20
score: 70.6
IPR008972CupredoxinSUPERFAMILY49503Cupredoxinscoord: 46..161
NoneNo IPR availablePANTHERPTHR34052FAMILY NOT NAMEDcoord: 36..168
NoneNo IPR availablePANTHERPTHR34052:SF1AUXIN RESPONSE FACTOR 30-RELATEDcoord: 36..168
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..168
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.645

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0000424 ID=g.arboreum_cottongen_reftransV1_0000424; Name=g.arboreum_cottongen_reftransV1_0000424; organism=Gossypium arboreum; type=contig; length=612bp
GGATTACTGAATTCCAATCTCTAATCTTATTGTGAATAAAATGATACAGA
ACATAATAAAGGCAGGCACTGCGTCTTCCCTGGATTCTGGTGGTGTTCCA
TCAGAAGGGCCGAGGACGGAGGAGCGGCGCCACAGCGAATTTCATAATCC
CAACCTTGCAGTGAAAGCCATTGCGCTCACCACAAACGAAGTAGTAGGGC
TTCTTCTTATTCTTCTTCTTCAAAACAAACTCAAACCCATTTCCGCCACC
TTGAGTTTGGTTGGCGATCAGCTTAGCTTTCTTCAAGTCGCAGTTAAGGA
AGCTCCTGAGGTTGGGTAGCAATGAGACACTGTGAGGAAACGTGGTGTTG
CTTGGTGGATCATATTTGAACACAAGAGTGTCATTGAAGTAGAAGGGAGC
GCTTTTGAGTGACCAGTCGGTGTAGTTGACCCCAAATTGCCAATGCTGTG
ATCCCCCAACAGTGAACCTTTTGGGGGCACTGCTATGATTGTAGGGATAA
GTATGGGAATCCCAACCCTTGTTAGCCAAGCTTACTTCCACTACGCAGGC
AATAGCCTGCAGTAGAACAAGCCCTTGAGCAAACCTAAACCCCATTTTGT
CAATCAAGTTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003245Phytocyanin_dom
IPR008972Cupredoxin
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity