g.arboreum_cottongen_reftransV1_0005094, g.arboreum_cottongen_reftransV1_0005094 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: K4C5L7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g050730.2 PE=4 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 2.176e-47 Identity = 89/173 (51.45%), Postives = 109/173 (63.01%), Query Frame = 3 Query: 30 MGKSLPGATKLQHLAKVTGA--AHHLNTTGKN------PKPTTLNRRII----SEDNKPNSKKKMESSSA------------SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476 MGKSLP ++Q A++ + HH P P R + S + + KK ME +S+ +RLPL++VV+DCVKRWF DTLKEAKAGD NMQVLVGQMY+SGYG+ RDAQKGR W+TRAS+ RSS WKVSDK PGYNASDSDSD+ D+ Sbjct: 1 MGKSLPSPNRIQDFARIINSNRIHHPTQVKPATRIRSVPSPVAAKSRAVVDGDSSERRLKLKKNMEEASSNSNSNSNTSSSNQRRLPLADVVADCVKRWFHDTLKEAKAGDANMQVLVGQMYFSGYGIARDAQKGRAWITRASKSRSSAWKVSDKRPGYNASDSDSDDTVEDA 173
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: F6HC95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02170 PE=4 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 2.649e-47 Identity = 91/156 (58.33%), Postives = 109/156 (69.87%), Query Frame = 3 Query: 30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKK--------KMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGD 473 MGKSLP T+LQ A+V + + K+ KP + NR E K + KMESS +R+PL++VVSDC KRWF+DTLKEAKAGD MQVLVGQMY+SGYGV RDAQKGR W++RAS+ RSS KV DKHPGYNASDSDSD++K D Sbjct: 1 MGKSLPTTTRLQEFARVVTSEKF--QSPKHAKPISRNRVSPPETTKLRGARLGSERVRLKMESSEGQRRMPLAQVVSDCAKRWFQDTLKEAKAGDTTMQVLVGQMYFSGYGVSRDAQKGRAWISRASKSRSSALKVGDKHPGYNASDSDSDDLKND 154
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: F6GY01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00750 PE=4 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 6.127e-47 Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = 3 Query: 186 MESSSASQ---RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNAS 443 MESS+A + R+PLSEVVSDCVKRWF+DTL+EAK+GDV+MQVLVGQMYYSGYGVPRDAQKGR+WMTRASR RSSVWKVSDKHPGYNAS Sbjct: 1 MESSAADRSHHRVPLSEVVSDCVKRWFQDTLREAKSGDVSMQVLVGQMYYSGYGVPRDAQKGRVWMTRASRTRSSVWKVSDKHPGYNAS 89
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A061FL66_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042415 PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 6.892e-47 Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 3 Query: 30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISE---------DNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476 MG+S+ TK Q AK + L+ K+ KPT+ NR E D++ +K+M+S R+PL++VVSD VK WF+D LKEAKAGD NMQVLVGQMY SG+GVP+D QKG W+ +ASR RSSVWKVSDKHPGYNASDSDSDE+KGD+ Sbjct: 1 MGRSILCTTKGQDFAKAV-PSDKLHRP-KHVKPTSRNRVACQEKASLPGVRVDSERVKQKEMDSWGDRDRIPLAQVVSDLVKGWFQDALKEAKAGDTNMQVLVGQMYCSGFGVPKDVQKGLAWIGKASRSRSSVWKVSDKHPGYNASDSDSDELKGDA 156
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A022PX41_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015205mg PE=4 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 8.270e-47 Identity = 86/160 (53.75%), Postives = 107/160 (66.88%), Query Frame = 3 Query: 27 FMGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRI-ISEDNKPNS---------KKKMESSSASQR---LPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIK 467 FMGKS+P + KLQ +A+ + + + KP + R I S P + + ME++ S R PL++VV+DCVKRWF+DTLKEAK GD +MQVLVGQMYYSGYGV RD+QK + W+ RASR RSSVWKV DKHPGYNASDSDSD+ K Sbjct: 2 FMGKSIPSSQKLQQIARFVASPDNGSNRRAQLKPASKARPISPSNPTGPRTGSNHQLKVDNRHMEAAENSDRQRMTPLADVVADCVKRWFQDTLKEAKNGDTSMQVLVGQMYYSGYGVGRDSQKAKAWINRASRTRSSVWKVGDKHPGYNASDSDSDDPK 161 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005094 ID=g.arboreum_cottongen_reftransV1_0005094; Name=g.arboreum_cottongen_reftransV1_0005094; organism=Gossypium arboreum; type=contig; length=615bpback to top |