g.arboreum_cottongen_reftransV1_0005094, g.arboreum_cottongen_reftransV1_0005094 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005094
Unique Nameg.arboreum_cottongen_reftransV1_0005094
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length615
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0005094:1..615 .
Chr12:26332279..26334720 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: K4C5L7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc06g050730.2 PE=4 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.176e-47
Identity = 89/173 (51.45%), Postives = 109/173 (63.01%), Query Frame = 3
Query:   30 MGKSLPGATKLQHLAKVTGA--AHHLNTTGKN------PKPTTLNRRII----SEDNKPNSKKKMESSSA------------SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MGKSLP   ++Q  A++  +   HH             P P     R +    S + +   KK ME +S+             +RLPL++VV+DCVKRWF DTLKEAKAGD NMQVLVGQMY+SGYG+ RDAQKGR W+TRAS+ RSS WKVSDK PGYNASDSDSD+   D+
Sbjct:    1 MGKSLPSPNRIQDFARIINSNRIHHPTQVKPATRIRSVPSPVAAKSRAVVDGDSSERRLKLKKNMEEASSNSNSNSNTSSSNQRRLPLADVVADCVKRWFHDTLKEAKAGDANMQVLVGQMYFSGYGIARDAQKGRAWITRASKSRSSAWKVSDKRPGYNASDSDSDDTVEDA 173          
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: F6HC95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02170 PE=4 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.649e-47
Identity = 91/156 (58.33%), Postives = 109/156 (69.87%), Query Frame = 3
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNSKK--------KMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGD 473
            MGKSLP  T+LQ  A+V  +      + K+ KP + NR    E  K    +        KMESS   +R+PL++VVSDC KRWF+DTLKEAKAGD  MQVLVGQMY+SGYGV RDAQKGR W++RAS+ RSS  KV DKHPGYNASDSDSD++K D
Sbjct:    1 MGKSLPTTTRLQEFARVVTSEKF--QSPKHAKPISRNRVSPPETTKLRGARLGSERVRLKMESSEGQRRMPLAQVVSDCAKRWFQDTLKEAKAGDTTMQVLVGQMYFSGYGVSRDAQKGRAWISRASKSRSSALKVGDKHPGYNASDSDSDDLKND 154          
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: F6GY01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0058g00750 PE=4 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.127e-47
Identity = 76/89 (85.39%), Postives = 84/89 (94.38%), Query Frame = 3
Query:  186 MESSSASQ---RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNAS 443
            MESS+A +   R+PLSEVVSDCVKRWF+DTL+EAK+GDV+MQVLVGQMYYSGYGVPRDAQKGR+WMTRASR RSSVWKVSDKHPGYNAS
Sbjct:    1 MESSAADRSHHRVPLSEVVSDCVKRWFQDTLREAKSGDVSMQVLVGQMYYSGYGVPRDAQKGRVWMTRASRTRSSVWKVSDKHPGYNAS 89          
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A061FL66_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042415 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 6.892e-47
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 3
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISE---------DNKPNSKKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MG+S+   TK Q  AK    +  L+   K+ KPT+ NR    E         D++   +K+M+S     R+PL++VVSD VK WF+D LKEAKAGD NMQVLVGQMY SG+GVP+D QKG  W+ +ASR RSSVWKVSDKHPGYNASDSDSDE+KGD+
Sbjct:    1 MGRSILCTTKGQDFAKAV-PSDKLHRP-KHVKPTSRNRVACQEKASLPGVRVDSERVKQKEMDSWGDRDRIPLAQVVSDLVKGWFQDALKEAKAGDTNMQVLVGQMYCSGFGVPKDVQKGLAWIGKASRSRSSVWKVSDKHPGYNASDSDSDELKGDA 156          
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A022PX41_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a015205mg PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.270e-47
Identity = 86/160 (53.75%), Postives = 107/160 (66.88%), Query Frame = 3
Query:   27 FMGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRI-ISEDNKPNS---------KKKMESSSASQR---LPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIK 467
            FMGKS+P + KLQ +A+   +  + +      KP +  R I  S    P +          + ME++  S R    PL++VV+DCVKRWF+DTLKEAK GD +MQVLVGQMYYSGYGV RD+QK + W+ RASR RSSVWKV DKHPGYNASDSDSD+ K
Sbjct:    2 FMGKSIPSSQKLQQIARFVASPDNGSNRRAQLKPASKARPISPSNPTGPRTGSNHQLKVDNRHMEAAENSDRQRMTPLADVVADCVKRWFQDTLKEAKNGDTSMQVLVGQMYYSGYGVGRDSQKAKAWINRASRTRSSVWKVGDKHPGYNASDSDSDDPK 161          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K4C5L7_SOLLC2.176e-4751.45Uncharacterized protein OS=Solanum lycopersicum GN... [more]
F6HC95_VITVI2.649e-4758.33Putative uncharacterized protein OS=Vitis vinifera... [more]
F6GY01_VITVI6.127e-4785.39Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A061FL66_THECC6.892e-4756.33Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
A0A022PX41_ERYGU8.270e-4753.75Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 88..123
e-value: 3.7E-4
score: 29.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 78..121
e-value: 6.3E-7
score: 28.6
NoneNo IPR availablePANTHERPTHR36792FAMILY NOT NAMEDcoord: 55..149
NoneNo IPR availablePANTHERPTHR36792:SF2SUBFAMILY NOT NAMEDcoord: 55..149
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 80..121

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005094 ID=g.arboreum_cottongen_reftransV1_0005094; Name=g.arboreum_cottongen_reftransV1_0005094; organism=Gossypium arboreum; type=contig; length=615bp
TTTCTGTCTTTAGGTTTTCAATTTATTTTATGGGAAAATCGCTGCCCGGC
GCAACCAAGCTTCAACATCTCGCAAAGGTTACCGGCGCCGCCCACCATCT
TAACACAACTGGGAAAAACCCAAAACCCACTACTCTGAACCGGCGGATTA
TAAGTGAAGACAACAAACCCAATTCCAAGAAGAAGATGGAGAGCTCCAGT
GCCAGTCAACGCCTCCCACTTTCCGAAGTCGTCTCCGATTGCGTTAAACG
TTGGTTCAAAGATACTCTCAAGGAAGCCAAAGCCGGGGACGTTAACATGC
AGGTTCTTGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCCCGGGAT
GCCCAAAAGGGAAGAATTTGGATGACAAGGGCGTCGAGGCTGCGGTCTTC
TGTTTGGAAAGTCAGCGATAAGCATCCAGGTTATAATGCGAGTGATTCAG
ATTCTGATGAAATCAAGGGTGATTCTTGAGTTTAACATACTTGGTCTCTG
CATTTCGAACATTTAGAATCGGTCCACATGGTGGTCATGCCTGTTTTGTC
TCCTTGAAAGTTCCTTGTTCCTGTGTTGTAACTCTTTTTTTTTTTTTTTT
TCCCTTTCTTTTTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding