g.arboreum_cottongen_reftransV1_0005094, g.arboreum_cottongen_reftransV1_0005094 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0005094
Unique Nameg.arboreum_cottongen_reftransV1_0005094
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length615
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0005094:1..615 .
Chr12:26332279..26334720 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: V7AQW5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G062000g PE=4 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.428e-52
Identity = 82/100 (82.00%), Postives = 90/100 (90.00%), Query Frame = 3 
Query:  186 MESSSA---SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MESS     S R+PLSEVV+DCVKRWF+D LKEAKAGD+NMQVLVGQMYYSGYGVPRDAQKGR+W+T+ASR RSSVWKV DKHPGYNASDSDSDE+K DS
Sbjct:    1 MESSVGGERSSRVPLSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYYSGYGVPRDAQKGRVWLTKASRTRSSVWKVGDKHPGYNASDSDSDELKEDS 100
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A0B2SKL2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_024415 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 9.212e-51
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 3 
Query:  186 MESSSA---SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MESS     S+R+ LSEVV+DCVKRWF+D LKEAKAGD+NMQVLVGQMYY GYGVPRDAQKGR+W+T+ASR RSSVWKV DKHPGYNASDSDSDE+K DS
Sbjct:    1 MESSVGGERSERVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYYGGYGVPRDAQKGRVWLTKASRTRSSVWKVGDKHPGYNASDSDSDELKEDS 100
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: C6T5J9_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 9.212e-51
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 3 
Query:  186 MESSSA---SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MESS     S+R+ LSEVV+DCVKRWF+D LKEAKAGD+NMQVLVGQMYY GYGVPRDAQKGR+W+T+ASR RSSVWKV DKHPGYNASDSDSDE+K DS
Sbjct:    1 MESSVGGERSERVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYYGGYGVPRDAQKGRVWLTKASRTRSSVWKVGDKHPGYNASDSDSDELKEDS 100
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: M5X2M1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012708mg PE=4 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.335e-50
Identity = 89/159 (55.97%), Postives = 110/159 (69.18%), Query Frame = 3 
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKPNS----------KKKMESSSASQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MGK+LP AT+ Q   +V  A       G+  +   +++  IS    P S          K KMESS    R+PL+ VVSDCVKRWF+DTLKEAKAGD +MQVLVGQMYYSGYGV RDA+KG+ WM RAS+ R+SVWKVS+K PGYNASDS+SDE++ D+
Sbjct:    1 MGKALPTATRFQEFTRVVSADK---LPGRPRRTKQVSQVRISPPQAPKSESFRVDPERIKLKMESSEGQSRVPLARVVSDCVKRWFQDTLKEAKAGDSSMQVLVGQMYYSGYGVSRDAKKGQAWMNRASKSRTSVWKVSNKPPGYNASDSNSDELEEDA 156
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A059A9L5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00156 PE=4 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 6.879e-49
Identity = 90/170 (52.94%), Postives = 110/170 (64.71%), Query Frame = 3 
Query:   30 MGKSLPGATKLQHLAKVTGAAHHLNTTGKNPKPTTLNRRIISEDNKP---------------NSKKKMESSSA-------SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGD 473
            MGKS+P AT+LQ  A+   ++  L    K  KP +  R    E ++P               + KKKME   A       + RLPL++VVSDC +RWF+DTL+EAKAGD  MQVLVGQMY SGYGVPRD QKGR W+ +AS+ RSSVW+VSDK PGYNASDSDS E+ GD
Sbjct:    1 MGKSIPSATRLQDFARAVSSSDKLRLP-KQAKPISRIRVSTPETSRPGGSGGGGGGGGGVRTDPKKKMEVGRAKSLELERNTRLPLAQVVSDCARRWFQDTLREAKAGDGAMQVLVGQMYNSGYGVPRDPQKGRAWINKASKARSSVWRVSDKQPGYNASDSDSGEMDGD 169
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A067FJC6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033594mg PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.994e-49
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 3 
Query:  204 SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            + R+PLSEVVSDCVKRWF+DTLKEAK GD+NMQVLVGQMY+SGYGV RDAQKGRIW++RASR RSSVWKV +KHPGYNASDSDSDE+K +S
Sbjct:   25 TTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES 115
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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: V4S5N3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013155mg PE=4 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 6.994e-49
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 3 
Query:  204 SQRLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            + R+PLSEVVSDCVKRWF+DTLKEAK GD+NMQVLVGQMY+SGYGV RDAQKGRIW++RASR RSSVWKV +KHPGYNASDSDSDE+K +S
Sbjct:   25 TTRVPLSEVVSDCVKRWFRDTLKEAKGGDINMQVLVGQMYFSGYGVARDAQKGRIWISRASRTRSSVWKVGEKHPGYNASDSDSDEMKEES 115
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: A0A0B2RFG1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_027933 PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.264e-48
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 3 
Query:  186 MESSSASQR---LPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MESS   +R   + LSEVV+DCVKRWF+D LKEAKAGD+NMQVLVGQMY SGYGVPRDAQKGR+W+T+AS+ RSSVWKV DKHPGYNASDSDSDE+K DS
Sbjct:    1 MESSVGGERSGRVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYNSGYGVPRDAQKGRVWVTKASKARSSVWKVGDKHPGYNASDSDSDELKEDS 100
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: I1JL20_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.264e-48
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 3 
Query:  186 MESSSASQR---LPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDEIKGDS 476
            MESS   +R   + LSEVV+DCVKRWF+D LKEAKAGD+NMQVLVGQMY SGYGVPRDAQKGR+W+T+AS+ RSSVWKV DKHPGYNASDSDSDE+K DS
Sbjct:    1 MESSVGGERSGRVALSEVVADCVKRWFRDALKEAKAGDINMQVLVGQMYNSGYGVPRDAQKGRVWVTKASKARSSVWKVGDKHPGYNASDSDSDELKEDS 100
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Match: W1NJ86_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00023p00110940 PE=4 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.607e-47
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 3 
Query:  210 RLPLSEVVSDCVKRWFKDTLKEAKAGDVNMQVLVGQMYYSGYGVPRDAQKGRIWMTRASRLRSSVWKVSDKHPGYNASDSDSDE 461
            RLPLSEVV+DCVKRWF+DTLKEA+AGD +MQVLVGQMYYSGYG+PRDAQKGR W+T+AS+ RSSVWKVSDKHPGYNASDSDSDE
Sbjct:   10 RLPLSEVVADCVKRWFQDTLKEARAGDSSMQVLVGQMYYSGYGIPRDAQKGRAWLTKASKNRSSVWKVSDKHPGYNASDSDSDE 93
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V7AQW5_PHAVU6.428e-5282.00Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
A0A0B2SKL2_GLYSO9.212e-5180.00Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
C6T5J9_SOYBN9.212e-5180.00Uncharacterized protein OS=Glycine max PE=2 SV=1[more]
M5X2M1_PRUPE8.335e-5055.97Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A059A9L5_EUCGR6.879e-4952.94Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A067FJC6_CITSI6.994e-4982.42Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4S5N3_9ROSI6.994e-4982.42Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0B2RFG1_GLYSO1.264e-4878.00Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
I1JL20_SOYBN1.264e-4878.00Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
W1NJ86_AMBTC1.607e-4786.90Uncharacterized protein OS=Amborella trichopoda GN... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0005094 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 88..123
e-value: 3.7E-4
score: 29.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 78..121
e-value: 6.3E-7
score: 28.6
NoneNo IPR availablePANTHERPTHR36792FAMILY NOT NAMEDcoord: 55..149
NoneNo IPR availablePANTHERPTHR36792:SF2SUBFAMILY NOT NAMEDcoord: 55..149
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 80..121

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0005094 ID=g.arboreum_cottongen_reftransV1_0005094; Name=g.arboreum_cottongen_reftransV1_0005094; organism=Gossypium arboreum; type=contig; length=615bp
TTTCTGTCTTTAGGTTTTCAATTTATTTTATGGGAAAATCGCTGCCCGGC
GCAACCAAGCTTCAACATCTCGCAAAGGTTACCGGCGCCGCCCACCATCT
TAACACAACTGGGAAAAACCCAAAACCCACTACTCTGAACCGGCGGATTA
TAAGTGAAGACAACAAACCCAATTCCAAGAAGAAGATGGAGAGCTCCAGT
GCCAGTCAACGCCTCCCACTTTCCGAAGTCGTCTCCGATTGCGTTAAACG
TTGGTTCAAAGATACTCTCAAGGAAGCCAAAGCCGGGGACGTTAACATGC
AGGTTCTTGTGGGTCAAATGTATTATAGCGGTTATGGGGTTCCCCGGGAT
GCCCAAAAGGGAAGAATTTGGATGACAAGGGCGTCGAGGCTGCGGTCTTC
TGTTTGGAAAGTCAGCGATAAGCATCCAGGTTATAATGCGAGTGATTCAG
ATTCTGATGAAATCAAGGGTGATTCTTGAGTTTAACATACTTGGTCTCTG
CATTTCGAACATTTAGAATCGGTCCACATGGTGGTCATGCCTGTTTTGTC
TCCTTGAAAGTTCCTTGTTCCTGTGTTGTAACTCTTTTTTTTTTTTTTTT
TCCCTTTCTTTTTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding