g.arboreum_cottongen_reftransV1_0016458, g.arboreum_cottongen_reftransV1_0016458 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: B9HDE5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02290g PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.795e-35 Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 A EF+ERL+ LKA DPIFFR+KEL+ARP++++ AR+Y ELQQ ++GWE KPWLPK +V+E+ + DK K+WLD+KEAEQ+K SGFS PVFTS+EVY KV +Q K S Sbjct: 720 AKEFEERLDSLKAIGDPIFFRYKELSARPKSIELARKYPGELQQIVKGWETKKPWLPKDRVDEVVGDADKLKSWLDKKEAEQKKASGFSTPVFTSEEVYLKVFSLQEKVAS 830
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A067FAC8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002363mg PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.317e-34 Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 A EFQERL++LKA DP+FFRFKELTARP +V+ A++YL +LQQ + WE +KPWLPK + +E+ + + FK+WLDEKE +Q+K SGFS P FTS+EVYEK+ +Q+K +S Sbjct: 728 AKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINS 838
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: V4SVE8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011017mg PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 7.914e-34 Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 A EFQERL++LKA DP+FFRFKELTARP +V+ A++YL +LQQ + WE +KPWLPK + +E+ + + FK+WLDEKE Q+K SGFS P FTS+EVYEK+ +Q+K +S Sbjct: 728 AKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENVQKKTSGFSKPAFTSEEVYEKILKLQDKINS 838
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0A0L304_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617390 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 9.337e-33 Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 ATEFQERL++LKA DPIFFR KELTARP+AV+ R+YL +LQ I+ WE KPW+PK +++E+ DKFK WL+EKEAEQ+K S S PVFTS++VY K +Q K S Sbjct: 718 ATEFQERLDMLKAIGDPIFFRLKELTARPQAVETVRKYLLDLQTIIQNWETKKPWVPKERIQEVKSESDKFKIWLNEKEAEQKKNSASSPPVFTSEDVYSKAFNIQEKVTS 828
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: F6HS86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0096g00090 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.324e-32 Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXXXXXXXNNAETEKDTSGDEK 422 A EFQERL+LLK+ DPIFFR ELTARP A++ A +YL +L+Q ++ WE KPWL K K++E+ + DK K WL+EKEAEQ+K SGFS P FTS EVYEK+ Q K SI +IPKPKPK EKP N T+ SG+EK Sbjct: 751 AAEFQERLDLLKSIGDPIFFRLNELTARPAAMEDAHKYLGQLKQIVQDWETKKPWLLKDKIDEVLSDGDKVKNWLEEKEAEQKKTSGFSTPAFTSDEVYEKIFKFQEKVASINRIPKPKPKIEKPTKNETTDNGASGEEK 890
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B2QK82_GLYSO (Heat shock 70 kDa protein 17 OS=Glycine soja GN=glysoja_044059 PE=4 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.326e-32 Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 ATEFQE L+ LKA DPIFFR KELT RP AV+ A +Y+ EL+Q ++ W+ KPWLP+ +V+E+ + +K K WLDEKEAEQ+K SGFS P FTS+EVY KV +Q K S Sbjct: 545 ATEFQEHLDQLKAVGDPIFFRLKELTTRPAAVEHAHKYIDELKQIVQEWKAKKPWLPQERVDEVIKSSEKLKNWLDEKEAEQKKTSGFSKPAFTSEEVYLKVLDLQTKVAS 655
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: M0X1Z9_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.627e-32 Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 A EFQERL+ LKA DPI FR EL ARP A AR YLTELQ+ ++ WE KPWLPK +V+E+ DK K WL+EKEA Q+ S+P FTS+EVY+KV +Q+K S Sbjct: 43 ANEFQERLDQLKAMGDPILFRMSELKARPAACGSARLYLTELQKIVKNWETSKPWLPKKRVDEVVSEADKLKAWLEEKEALQKSTPVHSLPAFTSEEVYKKVLALQDKVSS 153
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B2RV83_GLYSO (Heat shock 70 kDa protein 17 OS=Glycine soja GN=glysoja_044407 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 6.765e-32 Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 ATEFQERL+ LKA DPIFFR KELTARP AV+ A +Y+ EL+Q + W+ K WLP+ +V+E+ + +K K WLDEKEAEQ K SGFS P FTS+EVY KV +Q K S Sbjct: 450 ATEFQERLDQLKAVGDPIFFRLKELTARPAAVEHANKYIDELKQIVEEWKAKKSWLPQERVDEVIKSSEKLKNWLDEKEAEQTKTSGFSKPAFTSEEVYLKVLDLQTKVAS 560
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A072UZC8_MEDTR (Heat shock 70 kDa protein OS=Medicago truncatula GN=MTR_3g081170 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.846e-31 Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 ATEFQERL+ LKA DPIFFR KELTARP AV+ AR+Y+ EL+Q + W+ K WLPK +V+E+ +K K WLDEKE EQ+K SGFS P FTS+EV KV +QNK S Sbjct: 719 ATEFQERLDKLKAVGDPIFFRLKELTARPAAVEHARKYIDELKQIVEEWKAKKSWLPKERVDEVIDVAEKLKNWLDEKETEQKKTSGFSKPAFTSEEVILKVLDLQNKVAS 829
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: F6H3G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04410 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 2.426e-31 Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335 A EFQERL+LLK+ DPIFFR ELTARP A++ AR+YL +L Q ++ WE KPWL K K++E+ + DK K WL+EKEAEQ+K SGFS P FTS EVYEK+ Q K S Sbjct: 716 AAEFQERLDLLKSIGDPIFFRLTELTARPAAMEDARKYLGQLNQIVQDWETKKPWLLKDKIDEVLSDGDKVKNWLEEKEAEQKKSSGFSTPAFTSDEVYEKIFKFQEKVAS 826
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Match: HSP7R_ARATH (Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.985e-29 Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 3 Query: 3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329 ATEF++RL+ LKA PI FR +ELTARP A+++AR+YLTEL++ I+ WE +K WLPK K++E+S +K K+WLD+ AEQ+K S +S PVFTS EVY KV +Q+K Sbjct: 714 ATEFEKRLDSLKAIGSPISFRSEELTARPVAIEYARKYLTELKEIIKEWETNKTWLPKEKIDEVSKEAEKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKV 822 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0016458 ID=g.arboreum_cottongen_reftransV1_0016458; Name=g.arboreum_cottongen_reftransV1_0016458; organism=Gossypium arboreum; type=contig; length=814bpback to top |