g.arboreum_cottongen_reftransV1_0016458, g.arboreum_cottongen_reftransV1_0016458 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0016458
Unique Nameg.arboreum_cottongen_reftransV1_0016458
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length814
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0016458:1..814 .
Chr9:43659..46868 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: B9HDE5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s02290g PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.795e-35
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            A EF+ERL+ LKA  DPIFFR+KEL+ARP++++ AR+Y  ELQQ ++GWE  KPWLPK +V+E+  + DK K+WLD+KEAEQ+K SGFS PVFTS+EVY KV  +Q K  S
Sbjct:  720 AKEFEERLDSLKAIGDPIFFRYKELSARPKSIELARKYPGELQQIVKGWETKKPWLPKDRVDEVVGDADKLKSWLDKKEAEQKKASGFSTPVFTSEEVYLKVFSLQEKVAS 830          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A067FAC8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002363mg PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.317e-34
Identity = 65/111 (58.56%), Postives = 88/111 (79.28%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            A EFQERL++LKA  DP+FFRFKELTARP +V+ A++YL +LQQ +  WE +KPWLPK + +E+  + + FK+WLDEKE +Q+K SGFS P FTS+EVYEK+  +Q+K +S
Sbjct:  728 AKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENDQKKTSGFSKPAFTSEEVYEKILKLQDKINS 838          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: V4SVE8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011017mg PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.914e-34
Identity = 65/111 (58.56%), Postives = 87/111 (78.38%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            A EFQERL++LKA  DP+FFRFKELTARP +V+ A++YL +LQQ +  WE +KPWLPK + +E+  + + FK+WLDEKE  Q+K SGFS P FTS+EVYEK+  +Q+K +S
Sbjct:  728 AKEFQERLDVLKAIGDPVFFRFKELTARPASVEHAQKYLGQLQQIVNDWETNKPWLPKDRTDEVLKDSETFKSWLDEKENVQKKTSGFSKPAFTSEEVYEKILKLQDKINS 838          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0A0L304_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G617390 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.337e-33
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            ATEFQERL++LKA  DPIFFR KELTARP+AV+  R+YL +LQ  I+ WE  KPW+PK +++E+    DKFK WL+EKEAEQ+K S  S PVFTS++VY K   +Q K  S
Sbjct:  718 ATEFQERLDMLKAIGDPIFFRLKELTARPQAVETVRKYLLDLQTIIQNWETKKPWVPKERIQEVKSESDKFKIWLNEKEAEQKKNSASSPPVFTSEDVYSKAFNIQEKVTS 828          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: F6HS86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0096g00090 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.324e-32
Identity = 82/140 (58.57%), Postives = 101/140 (72.14%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADSXXXXXXXXXXXXXXXNNAETEKDTSGDEK 422
            A EFQERL+LLK+  DPIFFR  ELTARP A++ A +YL +L+Q ++ WE  KPWL K K++E+  + DK K WL+EKEAEQ+K SGFS P FTS EVYEK+   Q K  SI +IPKPKPK EKP  N  T+   SG+EK
Sbjct:  751 AAEFQERLDLLKSIGDPIFFRLNELTARPAAMEDAHKYLGQLKQIVQDWETKKPWLLKDKIDEVLSDGDKVKNWLEEKEAEQKKTSGFSTPAFTSDEVYEKIFKFQEKVASINRIPKPKPKIEKPTKNETTDNGASGEEK 890          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B2QK82_GLYSO (Heat shock 70 kDa protein 17 OS=Glycine soja GN=glysoja_044059 PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.326e-32
Identity = 65/111 (58.56%), Postives = 82/111 (73.87%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            ATEFQE L+ LKA  DPIFFR KELT RP AV+ A +Y+ EL+Q ++ W+  KPWLP+ +V+E+  + +K K WLDEKEAEQ+K SGFS P FTS+EVY KV  +Q K  S
Sbjct:  545 ATEFQEHLDQLKAVGDPIFFRLKELTTRPAAVEHAHKYIDELKQIVQEWKAKKPWLPQERVDEVIKSSEKLKNWLDEKEAEQKKTSGFSKPAFTSEEVYLKVLDLQTKVAS 655          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: M0X1Z9_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.627e-32
Identity = 62/111 (55.86%), Postives = 76/111 (68.47%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            A EFQERL+ LKA  DPI FR  EL ARP A   AR YLTELQ+ ++ WE  KPWLPK +V+E+    DK K WL+EKEA Q+     S+P FTS+EVY+KV  +Q+K  S
Sbjct:   43 ANEFQERLDQLKAMGDPILFRMSELKARPAACGSARLYLTELQKIVKNWETSKPWLPKKRVDEVVSEADKLKAWLEEKEALQKSTPVHSLPAFTSEEVYKKVLALQDKVSS 153          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A0B2RV83_GLYSO (Heat shock 70 kDa protein 17 OS=Glycine soja GN=glysoja_044407 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.765e-32
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            ATEFQERL+ LKA  DPIFFR KELTARP AV+ A +Y+ EL+Q +  W+  K WLP+ +V+E+  + +K K WLDEKEAEQ K SGFS P FTS+EVY KV  +Q K  S
Sbjct:  450 ATEFQERLDQLKAVGDPIFFRLKELTARPAAVEHANKYIDELKQIVEEWKAKKSWLPQERVDEVIKSSEKLKNWLDEKEAEQTKTSGFSKPAFTSEEVYLKVLDLQTKVAS 560          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: A0A072UZC8_MEDTR (Heat shock 70 kDa protein OS=Medicago truncatula GN=MTR_3g081170 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.846e-31
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            ATEFQERL+ LKA  DPIFFR KELTARP AV+ AR+Y+ EL+Q +  W+  K WLPK +V+E+    +K K WLDEKE EQ+K SGFS P FTS+EV  KV  +QNK  S
Sbjct:  719 ATEFQERLDKLKAVGDPIFFRLKELTARPAAVEHARKYIDELKQIVEEWKAKKSWLPKERVDEVIDVAEKLKNWLDEKETEQKKTSGFSKPAFTSEEVILKVLDLQNKVAS 829          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Match: F6H3G5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04410 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.426e-31
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKADS 335
            A EFQERL+LLK+  DPIFFR  ELTARP A++ AR+YL +L Q ++ WE  KPWL K K++E+  + DK K WL+EKEAEQ+K SGFS P FTS EVYEK+   Q K  S
Sbjct:  716 AAEFQERLDLLKSIGDPIFFRLTELTARPAAMEDARKYLGQLNQIVQDWETKKPWLLKDKIDEVLSDGDKVKNWLEEKEAEQKKSSGFSTPAFTSDEVYEKIFKFQEKVAS 826          
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Match: HSP7R_ARATH (Heat shock 70 kDa protein 17 OS=Arabidopsis thaliana GN=HSP70-17 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.985e-29
Identity = 61/109 (55.96%), Postives = 83/109 (76.15%), Query Frame = 3
Query:    3 ATEFQERLNLLKAATDPIFFRFKELTARPEAVKFARRYLTELQQTIRGWEKDKPWLPKVKVEELSINIDKFKTWLDEKEAEQQKMSGFSMPVFTSKEVYEKVTGVQNKA 329
            ATEF++RL+ LKA   PI FR +ELTARP A+++AR+YLTEL++ I+ WE +K WLPK K++E+S   +K K+WLD+  AEQ+K S +S PVFTS EVY KV  +Q+K 
Sbjct:  714 ATEFEKRLDSLKAIGSPISFRSEELTARPVAIEYARKYLTELKEIIKEWETNKTWLPKEKIDEVSKEAEKVKSWLDKNVAEQEKTSLWSKPVFTSTEVYAKVFTLQDKV 822          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9HDE5_POPTR1.795e-3561.26Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A067FAC8_CITSI2.317e-3458.56Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4SVE8_9ROSI7.914e-3458.56Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0A0L304_CUCSA9.337e-3359.46Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
F6HS86_VITVI2.324e-3258.57Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A0B2QK82_GLYSO5.326e-3258.56Heat shock 70 kDa protein 17 OS=Glycine soja GN=gl... [more]
M0X1Z9_HORVD6.627e-3255.86Uncharacterized protein OS=Hordeum vulgare var. di... [more]
A0A0B2RV83_GLYSO6.765e-3259.46Heat shock 70 kDa protein 17 OS=Glycine soja GN=gl... [more]
A0A072UZC8_MEDTR1.846e-3160.36Heat shock 70 kDa protein OS=Medicago truncatula G... [more]
F6H3G5_VITVI2.426e-3159.46Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0016458 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HSP7R_ARATH1.985e-2955.96Heat shock 70 kDa protein 17 OS=Arabidopsis thalia... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19375HEAT SHOCK PROTEIN 70KDAcoord: 2..67
NoneNo IPR availablePANTHERPTHR19375:SF90HYPOXIA UP-REGULATED PROTEIN 1coord: 2..67

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0016458 ID=g.arboreum_cottongen_reftransV1_0016458; Name=g.arboreum_cottongen_reftransV1_0016458; organism=Gossypium arboreum; type=contig; length=814bp
CTGCAACAGAGTTTCAAGAACGCCTAAATTTGTTAAAAGCTGCCACTGAT
CCAATATTTTTCCGATTTAAAGAGTTGACTGCAAGGCCAGAAGCAGTAAA
ATTTGCGCGACGATACCTTACTGAATTGCAACAGACTATTCGTGGGTGGG
AGAAGGACAAACCTTGGCTGCCAAAAGTTAAAGTAGAGGAGTTGTCGATC
AATATTGACAAGTTCAAGACTTGGTTGGATGAAAAGGAGGCCGAGCAGCA
GAAGATGTCTGGATTCAGCATGCCTGTTTTCACATCTAAAGAAGTCTACG
AGAAGGTAACCGGTGTGCAAAACAAGGCTGATAGCATTAAGAAAATCCCC
AAGCCAAAGCCTAAAACTGAGAAGCCCATAAATAATGCGGAAACAGAGAA
GGATACCTCTGGAGATGAAAAACCAGCTGAGGAGTCAGATAGCTCAAAGA
ACGAAGAAGATAAGGTAGAACCAGAGATGCACGAAGAGCTGTAATCAGTT
TTTAACACAACAAAAAGGACTCTCTTAACTAATGACGGGCCTTCTGACTT
GGTAAGTAGAGATTGATTTAATTCCAGCAAATTTAGTCTTATGAAAAAAA
TCATAGTATTGCTCTACTTTACCCTTTTTTGTGATTTGATCGTGGTCGGA
TCGAGTCCGGTAGTTCAAAGGCTTCTAAAACAGTTTTGTCTTCTAAAGAC
ACAGAGCAATGTTAGAAGATTTGTCATAAAAAGAGAAGTTTAGTTTTATT
ATCCTTCTCTAAGGATTTTGGATGCCAATATTAGTTTTATGTCAATTACC
ATTATAATCTGAAG
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