g.arboreum_cottongen_reftransV1_0020566, g.arboreum_cottongen_reftransV1_0020566 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A087H486_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA4G191900 PE=4 SV=1) HSP 1 Score: 449.899 bits (1156), Expect = 1.648e-151 Identity = 251/386 (65.03%), Postives = 297/386 (76.94%), Query Frame = 1 Query: 91 DIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 D KQ IVS+LCKHFSLDPK F S +D+KTLY ++LK+SGKE NDEV+KW+ FA+SFP +SK C+ L +LN +LA KSVLLG G TPS AD+ VF +HSSV+ LS +K K+PHV+RWM+YIQN E L F I ++ PVF+ ++ K+ K E + K V++ K DK +A+ + KK++ KK +KK E E + K+ ELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE KVRQVVSGLAK+C+PEDLTNR V LITNVKPGKLRDV SEGLVLCASNEDH+ VEPLLPP GAKPGE +SFSGI+GKPEDVLNPKKKQLEKITP+L+TDE GVAT+KG PFMTSAGPCTSSIPKA+IK Sbjct: 2 DPNTKQLIVSALCKHFSLDPKPFLSGAGESDVKTLYSDVLKASGKEVSAQNDEVLKWVEFAESFPANSKDCFPALEKLNVELASKSVLLGKGLTPSAADIAVFPALHSSVLDLSDLDKAKVPHVIRWMNYIQNKEKLSTLFGPIPVKLPVFDFEVPKSVVKVEANPNTKKVVESVKPVDKSEAQPSTKKTEPEETKKKVTFEKDVKKEKKKPAEPEPAKKEVELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEGKVRQVVSGLAKFCNPEDLTNRLVALITNVKPGKLRDVASEGLVLCASNEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPKKKQLEKITPHLYTDENGVATYKGTPFMTSAGPCTSSIPKATIK 387
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A059A9C4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00111 PE=4 SV=1) HSP 1 Score: 445.662 bits (1145), Expect = 7.188e-150 Identity = 252/382 (65.97%), Postives = 292/382 (76.44%), Query Frame = 1 Query: 103 KQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSS-GKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 KQ +VS+LCK FS DP AF S+ +DIK+L +ILKSS K S +++EV KWI FA+SFP ++++ LN+LN +L KSVLLGNG TPSEAD+IVFS IHSSV+ LS +++KLPH+MRW DYIQ+ ED G FEKI LEK VF P K AK + K K ADK +A+ N KKSD + K P ++ + + VSLLNI+VGLIRKAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSP++LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDH+ VEPLLPPEGAK GE +SFSGIDGKPE+VLNPKKKQLEKITP+LFTDEKGVATFKG+PFMTS GPC SSIPKASIK Sbjct: 8 KQAMVSALCKRFSSDPAAFLSKAGEHDIKSLLSDILKSSTNKASADHHEEVTKWIEFAESFPVNTESSIDALNKLNEELVTKSVLLGNGVTPSEADIIVFSTIHSSVVGLSNTDRQKLPHLMRWFDYIQHKEDFGESFEKITLEKAVFAPPEPKIVAKSDEDPKTK------KTADKSEADSNTKKSDKKGKVAGQANQESKKAPGKEPAEKDKE----IDVSLLNIRVGLIRKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPDELTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHSVVEPLLPPEGAKIGEQVSFSGIDGKPEEVLNPKKKQLEKITPHLFTDEKGVATFKGVPFMTSGGPCVSSIPKASIK 379
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A5ATY2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013997 PE=4 SV=1) HSP 1 Score: 449.129 bits (1154), Expect = 3.309e-149 Identity = 275/447 (61.52%), Postives = 322/447 (72.04%), Query Frame = 1 Query: 46 RKREENPDMATNGTSD---IKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPV----------------------------------FEPQMAKA----------AAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 RK+ E MAT + ++RKQ IVSSLCKH SLDPK F + NDIK+L NILKSSG+ +P+N+DEV KWI+FA+S+P DS AC+G L+ +N +LA+KSVL G+G PSEADVIVFS++H VI L E++KLPH++RWM+YIQ+ E+ G F KILLE V F+ ++A+A K E +AK TVQ+TK AD + E N S KK + A +KK PEKEA +KDKE+S+SLLNIQVGLIRKAWKHPSADSLLVEEIDVG+AK+RQVVSGLAKYCSPE+LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAK GE +SFSG +GKPEDVLNPKKKQLEKITP+LFTD+KGVATFKGIPFMTS GPCT SIPKASIK Sbjct: 81 RKKSER-KMATGDAAANVVLRRKQSIVSSLCKHLSLDPKIFLDSIVENDIKSLCANILKSSGR-APKNSDEVSKWISFAESYPVDSXACFGALHVINEELAEKSVLXGDGLKPSEADVIVFSLLHPFVIGLPNTERQKLPHLVRWMEYIQSKENFGELFPKILLENDVIELPVEDGSNRKEEFVFTSVDVILYWLNTDSARMFKCKVAEAFFIAIKKPKIVVKLEADPNAKKTVQSTKNAD--NTEANPNSKKSDVVKKVTGNNAAAEQKKKLPEKEAVEKDKEVSISLLNIQVGLIRKAWKHPSADSLLVEEIDVGDAKLRQVVSGLAKYCSPEELTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTGVEPLLPPEGAKIGERVSFSGNEGKPEDVLNPKKKQLEKITPHLFTDDKGVATFKGIPFMTSGGPCTCSIPKASIK 523
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FTI0_THECC (OB-fold nucleic acid binding domain-containing protein isoform 8 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1) HSP 1 Score: 440.654 bits (1132), Expect = 3.474e-149 Identity = 242/337 (71.81%), Postives = 261/337 (77.45%), Query Frame = 1 Query: 70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSG 1080 MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ K V K T+ +DK D E LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSG Sbjct: 1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQKKAKGDKEAVQEKKKAP--ETEASDK-DKE--------------------------------------LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSG 296
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: Q93VB0_ARATH (Nucleic acid-binding, OB-fold-like protein OS=Arabidopsis thaliana GN=At2g40660 PE=2 SV=1) HSP 1 Score: 442.195 bits (1136), Expect = 1.898e-148 Identity = 249/388 (64.18%), Postives = 293/388 (75.52%), Query Frame = 1 Query: 91 DIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 D K KQ I+S+LCKHFSLDP+ F +DIKTLY N+LK+SGKE N++V+KW+ FA+ F DSK + L +LN +LA KSVLLGNG TPS ADV VFS +HSSV+ LS +KEK+PHV+RW++YIQN E+L F I ++ P F ++ K A K E S++K + K DKPD + + + AK +KK E E + K+ ELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE KVRQVVSGLAK+CSPEDLTNR V LITNVKPGKLRDVMS+GLVLCAS+EDH+ VEPLLPP GAKPGE +SFSGI+GKPEDVLNPKKKQLEKITP L+TDE GVAT+KGI FMTSAGPCTSSIPKA+IK Sbjct: 2 DSKAKQMILSALCKHFSLDPEPFVGGAGESDIKTLYSNVLKASGKEVSAQNNDVLKWLDFAEGFSSDSKDWFSALEKLNLELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSDKEKVPHVIRWVNYIQNKEELSTLFAPIPVKLPEFSFEVPKPAIKVETNSNSKKAAEGVKPVDKPDVQPQLGTKKTEPEEPKKNAAKEKDAKKEKKKPAEPEPAKKEAELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCSPEDLTNRLVALITNVKPGKLRDVMSQGLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPKKKQLEKITPGLYTDENGVATYKGIQFMTSAGPCTSSIPKATIK 389
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2) HSP 1 Score: 163.31 bits (412), Expect = 1.055e-41 Identity = 84/164 (51.22%), Postives = 113/164 (68.90%), Query Frame = 1 Query: 757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPC-TSSIPKASIK 1245 ++V+ L+I+VGLIRKA KHP ADSL VEEIDVGE R VVSGL K+ E++ NR+V ++ N+KP +R + S +VL ASNEDHTKVE + PPE A GE ++F+G G+PE LN K K EK++ +L ++ + VA +K +PF TSAG C SI I+ Sbjct: 638 VTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYMC_ARATH (Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.358e-41 Identity = 82/164 (50.00%), Postives = 116/164 (70.73%), Query Frame = 1 Query: 757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPC-TSSIPKASIK 1245 ++++ L+I+VG I KA KHP AD+L VEEIDVG ++R VVSGL KY E++ NR V ++ N+KP K+RD++S+ +VL AS+ D +KVE + PP+ A GE ++F G +G+P+DVLNPKKK E + +L T E VA +K +PF TSAG C SSI +I+ Sbjct: 634 ITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 1.931e-38 Identity = 74/156 (47.44%), Postives = 107/156 (68.59%), Query Frame = 1 Query: 757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF-MTSAGPCTS 1221 + VS L++++G I A KHP ADSL VEE+DVGE R VVSGL + E + NR V+L+ N+KP K+R V+S+ +V+CAS+ + K+E L PP G+ PG+ I+F G+P+ LNPKKK E+I P+L T+++ VAT+KG+PF + G C + Sbjct: 150 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRA 303
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2) HSP 1 Score: 146.747 bits (369), Expect = 3.202e-38 Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 1 Query: 757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF 1194 + S L++++G I A KHP ADSL VEE+DVGEA R VVSGL + E + NR VVL+ N+KP K+R V+S+ +V+CAS+ + KVE L PP G+ PG+ I+F G+P+ LNPKKK E+I P+L T+ + VAT+KG PF Sbjct: 148 IDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPF 291
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.904e-36 Identity = 71/146 (48.63%), Postives = 101/146 (69.18%), Query Frame = 1 Query: 757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF 1194 + VS L++++G I KHP ADSL VEE+DVGEA R V+SGL + + + NR VVL+ N+KP K+R ++S+ +V+CAS+ + KVE L PP G+ PG+ I+F G+P+ LNPKKK E+I P+L T+ + VAT+KG PF Sbjct: 197 VDVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPF 340
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_XENLA (Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.180e-31 Identity = 76/170 (44.71%), Postives = 101/170 (59.41%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNE-DHTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK*KTKTIRG 1269 SLL+++VG I +HP ADSL VE +DVGEA R VVSGL +Y + L R VVL+ N+KP K+R + S+G++LCAS E + +VEPL PP G+ PGE I G + G+PE L PKKK EK+ + + A +KG F+T G T KT+RG Sbjct: 366 SLLDLRVGKILSVSQHPDADSLYVESVDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVT-----------CKTLRG 524
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_MOUSE (Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3) HSP 1 Score: 129.798 bits (325), Expect = 2.792e-31 Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTK-VEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209 S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ E+L +R VV++ N+KP K+R V S+G++LCAS E ++ VEPL PP G+ PGE + G + G+P++ L PKKK EK+ + E+ +A +K FMT G Sbjct: 366 SRLDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_HUMAN (Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4) HSP 1 Score: 129.798 bits (325), Expect = 3.070e-31 Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209 S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ E+L +R VV++ N+KP K+R V S+G++LCAS E + +VEPL PP G+ PGE + G + G+P++ L PKKK EK+ + E+ +A +K FMT G Sbjct: 366 SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 3.783e-31 Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209 S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ E+L +R VV++ N+KP K+R V S+G++LCAS E + +VEPL PP G+ PGE + G + G+P++ L PKKK EK+ + E+ +A +K FMT G Sbjct: 366 SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4) HSP 1 Score: 129.028 bits (323), Expect = 6.085e-31 Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCT 1218 S L+I+VG + KHP ADSL VE+IDVGEA+ R VVSGL ++ E+L +R VV++ N+KP K+R V S+G++LCAS E + KVEPL PP G+ PGE + G + G+P++ L PKKK EK+ + ++ +A +K FMT G + Sbjct: 366 SRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVS 518 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020566 ID=g.arboreum_cottongen_reftransV1_0020566; Name=g.arboreum_cottongen_reftransV1_0020566; organism=Gossypium arboreum; type=contig; length=1485bpback to top |