g.arboreum_cottongen_reftransV1_0020566, g.arboreum_cottongen_reftransV1_0020566 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FZ64_THECC (OB-fold nucleic acid binding domain-containing protein isoform 5 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1) HSP 1 Score: 480.715 bits (1236), Expect = 2.858e-164 Identity = 271/337 (80.42%), Postives = 293/337 (86.94%), Query Frame = 1 Query: 70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSG 1080 MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+ +AK TVQ+TKIADK AE S KK + +KKAPE EASDKDKELSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSG Sbjct: 1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAE--VNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSG 335
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FRZ8_THECC (OB-fold nucleic acid binding domain-containing protein isoform 6 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1) HSP 1 Score: 480.33 bits (1235), Expect = 4.228e-164 Identity = 263/361 (72.85%), Postives = 283/361 (78.39%), Query Frame = 1 Query: 70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLF 1152 MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ K V K T+ +DK D E LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP F Sbjct: 1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQKKAKGDKEAVQEKKKAP--ETEASDK-DKE--------------------------------------LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPVCF 320
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: B9S4F8_RICCO (Methionyl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_0690060 PE=4 SV=1) HSP 1 Score: 476.478 bits (1225), Expect = 8.489e-162 Identity = 271/392 (69.13%), Postives = 304/392 (77.55%), Query Frame = 1 Query: 73 ATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQ-NNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 A N + +KR Q I S+L KH SL S+ G+DIK+LY+NILKSSGK S Q NDEVMKWI FA+SFP D+ AC+ LN LN LA KSVLLGNG TPSEADVIVFSVIHSSVI LS EKEKL VMRWMDYIQ+ E E+ILLEKP FEP KA AK EV S+ K ++Q+TK +KPDAE + KKSD+ + + +E + E + +SVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAK+RQVVSGLAK+C+P++L NR VVLITNVKPGKLRDV SEGLVLCASN DH+ VEPLLPPEGAK GE +SFSG DGKPEDVLNPKKKQLEKITPNLFTD+KGVATFKGIPFMTS GPCTSSIPKASIK Sbjct: 3 AANESITLKRNQLIASALSKHLSLHSGTSLSECRGDDIKSLYVNILKSSGKWSQQKENDEVMKWIDFAESFPVDTSACFNALNGLNQHLALKSVLLGNGVTPSEADVIVFSVIHSSVIGLSHSEKEKLTQVMRWMDYIQHKETFVDPAERILLEKPAFEPLSTKAVAKIEVDSNVKKSMQSTKNTEKPDAEHSRKKSDAGKKVTEKESVQEKKKPAQTEPAEKEKE---VSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKFCTPDELMNRHVVLITNVKPGKLRDVASEGLVLCASNGDHSVVEPLLPPEGAKIGERVSFSGFDGKPEDVLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSGGPCTSSIPKASIK 391
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A067FJD9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015335mg PE=4 SV=1) HSP 1 Score: 474.937 bits (1221), Expect = 4.995e-161 Identity = 279/413 (67.55%), Postives = 307/413 (74.33%), Query Frame = 1 Query: 70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQ------------NTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 MA NG+ + RKQ IVS LCKH SLD K FSS DIKTLY +ILKSSGK S NDEVMKWI FA+SFP DSKAC+ L +LN +LA KSVLLGNG SEADVIVFS +HS V+ L+ ++ K+PHVMRWMDYIQ+ E LG F I LEKP FEP + AK V S+AK TVQ N K D + ++ + DK +KK+ E A DKDKELSVSLLNIQVGLIRK+WKHPSADSLLVEEIDVGEAK+RQVVSGLAKYC+P+DLTNRRV LITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAK GE ISFSGIDGKPE+VLNPKKKQLEKITPNLFTD+KGVATFKGIPFMTSAGPCTSSIPKASIK Sbjct: 1 MAANGSKNPTRKQLIVSILCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGKSS---NDEVMKWIEFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLH--GAKSAVDSNAKKTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDKTKKAVGDKEAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAGPCTSSIPKASIK 408
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A067JFS8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03314 PE=4 SV=1) HSP 1 Score: 474.552 bits (1220), Expect = 5.221e-161 Identity = 272/384 (70.83%), Postives = 310/384 (80.73%), Query Frame = 1 Query: 94 IKRKQGIVSSLCKHFSLDPKAFSSQVPGND-IKTLYINILKSSGKESPQ-NNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKAS 1239 +KRKQ + S+L KH L+ + + V G D IK+LY NILKSSGK PQ NDEVMKWI FA+SFP DS+AC+ LN LN +LA KSV+LGNG TPSE DVIVFSV+H SVI LS E+EKL +VMRWMDYIQN E+L FEKILLEKP+FEP A+ AAK E+ S+AK QNTK +K +A+KN KKSD+ ++K K+ + E DK+ +SVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE+K+RQVVSGLAKYCSP++LTNRRVVLITNVK GKLRDVMSEGLVLCASNEDH+ VEPLLPPEGAK GE ISFSGIDGKPEDVLNPKKKQL+KITPNLFTD+KGVAT+KGIPFMTS GPCTSSIPK S Sbjct: 10 LKRKQTVASALSKHLDLN---YGASVSGEDNIKSLYTNILKSSGKWLPQKENDEVMKWIEFAESFPIDSQACFDALNRLNQELAPKSVILGNGLTPSEVDVIVFSVVHPSVIRLSHSEREKLTYVMRWMDYIQNKEELVDLFEKILLEKPLFEPLGARDAAKAEIDSNAKKISQNTKNTEKSEADKNVKKSDAGAKVTESKDAKQEKKKPPQTEPAEKDKE--VSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGESKLRQVVSGLAKYCSPDELTNRRVVLITNVKSGKLRDVMSEGLVLCASNEDHSVVEPLLPPEGAKIGERISFSGIDGKPEDVLNPKKKQLDKITPNLFTDDKGVATYKGIPFMTSGGPCTSSIPKLS 388
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: B9IQ63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08680g PE=4 SV=1) HSP 1 Score: 474.937 bits (1221), Expect = 1.077e-160 Identity = 269/385 (69.87%), Postives = 309/385 (80.26%), Query Frame = 1 Query: 94 IKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESP-QNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 ++RKQ I S+L KH SL P+A S + DIK+LY+NILKSSGK SP + ++EVMKWI+FA+ FP DS C+ L+ LN DLA SVLLGNG TPSEAD+IVFSVIHSSVI LS E+EKL HVMRWMDYIQN D G FEK+LLEK FE Q K AK E+ ++AK TV+NTK +K +A+ + KKSD+ KK ++ P + ++ + LSVSLLNIQVGLIRKAWKHPSADSLLVEEID+G+AK+RQVVSGLAK+ SP+DLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAK GE +SF GIDGKPEDVLNPKKKQLEKITPNLF+D+KGVATFKGIPFMTS GPCTSSIPKASIK Sbjct: 45 LQRKQIISSALSKHLSLSPEAPSGDLGEYDIKSLYLNILKSSGKRSPSKESEEVMKWISFAEIFPIDSPTCFDALSGLNKDLALNSVLLGNGLTPSEADIIVFSVIHSSVIGLSHLEREKLVHVMRWMDYIQNKVDFGKLFEKVLLEKGAFELQGIKGDAKSEIDTNAKKTVENTKNKEKSEADLSMKKSDNKSTGKKESAQEKKKPSETEAGEKDKE----LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDIGDAKLRQVVSGLAKFYSPDDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTIVEPLLPPEGAKVGERVSFLGIDGKPEDVLNPKKKQLEKITPNLFSDDKGVATFKGIPFMTSGGPCTSSIPKASIK 425
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: D7T4B9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03060 PE=4 SV=1) HSP 1 Score: 471.47 bits (1212), Expect = 8.445e-160 Identity = 269/384 (70.05%), Postives = 311/384 (80.99%), Query Frame = 1 Query: 94 IKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 ++RKQ IVSSLCKH SLDPK F + NDIK+L NILKSSG+ +P+N+DEV KWI+FA+S+P DSKAC+G L+ +N +LA+KSVL+G+G PSEADVIVFS++H VI L E++KLPH++RWM+YIQ+ E+ G F KILLE V E K K E +AK TVQ+TK AD + E N S KK + A +KK PEKEA +KDKE+S+SLLNIQVGLIRKAWKHPSADSLLVEEIDVG+AK+RQVVSGLAKYCSPE+LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAK GE +SFSG +GKPEDVLNPKKKQLEKITP+LFTD+KGVATFKGIPFMTS GPCT SIPKASIK Sbjct: 12 LRRKQSIVSSLCKHLSLDPKIFLDSIVENDIKSLCANILKSSGR-APKNSDEVSKWISFAESYPVDSKACFGALHVINEELAEKSVLMGDGLKPSEADVIVFSLLHPFVIGLPNTERQKLPHLVRWMEYIQSKENFGELFPKILLENDVIELPKPKIVVKLEADPNAKKTVQSTKNAD--NTEANPNSKKSDVVKKVTGNNAAAEQKKKLPEKEAVEKDKEVSISLLNIQVGLIRKAWKHPSADSLLVEEIDVGDAKLRQVVSGLAKYCSPEELTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTGVEPLLPPEGAKIGERVSFSGNEGKPEDVLNPKKKQLEKITPHLFTDDKGVATFKGIPFMTSGGPCTCSIPKASIK 392
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: M5X055_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006649mg PE=4 SV=1) HSP 1 Score: 464.151 bits (1193), Expect = 6.782e-157 Identity = 264/401 (65.84%), Postives = 316/401 (78.80%), Query Frame = 1 Query: 70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKE-SPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFE------PQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 MA NG++ + RK+ I S+LCKHF LDPK F + ++I + Y ILKS+ + S + D V++WI +AD FP D +A + L LN LA SVLLGNGFTPSEADVIVF+V+HSSVI LS +++KLPH++RW+D+IQN D G +KI++EK F+ + AK+A K E+ S+AK TVQ+ K ADKP+A+ N KKSD+ K + ++K EA +KDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVG+AK+RQVVSGLAKYCSPE+LTNR+VVLITNVKPGKLRDV SEGLVLCASNEDHT+VEPLLPPEGA+PGE +SFSG+DGKPEDVLNPKKKQLEKITP+LFTD+KGVATFKGIPFMTSAGPCTSSIPKASIK Sbjct: 1 MAANGSTSLDRKRLIASALCKHFYLDPKTFPENIAEDEITSFYTTILKSAKNDASVEVQDGVLQWIRYADGFPTDPQAFFEVLKGLNDTLADVSVLLGNGFTPSEADVIVFAVVHSSVIGLSNSDRQKLPHLLRWVDHIQNKVDFGDLLKKIVIEKVPFDFLKLYALRGAKSAGKVEIDSNAKKTVQSAKSADKPEADLNTKKSDAEIKATGDKKTDKKATQEKKKSPETEAVEKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGDAKLRQVVSGLAKYCSPEELTNRKVVLITNVKPGKLRDVASEGLVLCASNEDHTRVEPLLPPEGARPGERVSFSGVDGKPEDVLNPKKKQLEKITPHLFTDDKGVATFKGIPFMTSAGPCTSSIPKASIK 401
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: R0HSK8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023092mg PE=4 SV=1) HSP 1 Score: 455.292 bits (1170), Expect = 4.720e-152 Identity = 259/403 (64.27%), Postives = 315/403 (78.16%), Query Frame = 1 Query: 46 RKREENPDMAT--NGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 R+R + ++A N T D K KQ I+S+LCKHFSLDP+ F +D+KTLY N+LK+SGKE N+EV+KW+ F+++FP SK C+ L +LN +LA KSVLLGNG TPS ADV VFS +HSSV+ LS +KEK+PHV+RW++YIQN EDL F I ++ VF+ +++K+ K E S+AK + K DK + + KK++ + KKKA +K+A EKK P + ++KD ELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE KVRQVVSGLAK+C+P+DL NR V LITNVKPGKLRDVMS+GLVLCASNEDH+ VEPLLPP GAKPGE +SFSGI+GKPEDVLNPKKKQLEKITP L+TDE GVAT+KGIPFMTSAGPCTSSIPKA+IK Sbjct: 87 RRRTQISEIAKEKNFTMDSKTKQMILSALCKHFSLDPENFLGGASQSDVKTLYSNVLKASGKEVSAQNNEVLKWLDFSEAFPAISKDCFAALEKLNVELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSDKEKVPHVIRWINYIQNKEDLSTLFAPIPVKLSVFDFEVSKSVPKVEANSNAKKATEGVKPVDKSEVQPITKKTEPEEPKKKATKEKDAKKEKKKPAETEPANKDVELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEEKVRQVVSGLAKFCNPDDLANRLVALITNVKPGKLRDVMSQGLVLCASNEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPKKKQLEKITPGLYTDENGVATYKGIPFMTSAGPCTSSIPKATIK 489
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: D7LFT2_ARALL (tRNA-binding region domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483125 PE=4 SV=1) HSP 1 Score: 450.284 bits (1157), Expect = 1.600e-151 Identity = 250/388 (64.43%), Postives = 294/388 (75.77%), Query Frame = 1 Query: 91 DIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245 D K KQ I+S+LCKHFSLDP+ F +D++TLY N+LK+SGKE NDEV+KW+ FA+ F +SK CY L +LN +LA KSVLLGNG TPS ADV VFS +HSSV+ LS KEK+PHV+RW++YIQN E+L F I ++ P F+ +++K A K E S+ K + K DK DA+ K K K +KK E E + K+ ELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE KVRQVVSGLAK+C+P+DLTNR V LITNVKPGKLRDVMS+GLVLCAS+EDH+ VEPLLPP GAKPGE +SFSGI+GKPEDVLNPKKKQLEKITP L+TDE GVAT+KGIPFMTSAGPCTSSIPKA+IK Sbjct: 2 DSKTKQMILSALCKHFSLDPEPFLGGAGDSDVRTLYSNVLKASGKEVSAQNDEVLKWLDFAEGFSANSKDCYAALEKLNLELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSNKEKVPHVIRWVNYIQNKEELSTLFAPIPVKLPEFDFEVSKPAIKVEANSNTKKAAEGVKPVDKSDAQPQPITKKTEPEEPKKNATKEKDAKKEKKKPAESEPAKKEAELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCNPDDLTNRLVALITNVKPGKLRDVMSQGLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPKKKQLEKITPGLYTDENGVATYKGIPFMTSAGPCTSSIPKATIK 389
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_XENTR (Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 7.646e-31 Identity = 75/170 (44.12%), Postives = 100/170 (58.82%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNE-DHTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK*KTKTIRG 1269 SLL+++VG I +HP ADSL VE +DVGE R VVSGL +Y + L R VVL+ N+KP K+R + S+G++LCAS E + +VEPL PP G+ PGE I G + G+PE L PKKK EK+ + + A +KG F+T G T KT+RG Sbjct: 366 SLLDLRVGKILSVRQHPDADSLYVESVDVGEENPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVT-----------CKTLRG 524
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_RAT (Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 9.984e-31 Identity = 72/150 (48.00%), Postives = 99/150 (66.00%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTK-VEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209 S L+I+VG I KHP ADSL VE+IDVGEA+ R VVSGL ++ E+L +R VV++ N+KP K+R V S+G++LCAS E ++ VEPL PP G+ PGE + G + G+P++ L PKKK EK+ + + VA +K FMT G Sbjct: 366 SRLDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISDDCVAQWKQTNFMTKLG 515
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_DANRE (Tyrosine--tRNA ligase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 9.741e-30 Identity = 74/159 (46.54%), Postives = 97/159 (61.01%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDH-TKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKA 1236 S L+I+VG + KHP ADSL +E+IDVGE + R VVSGL Y + E L +R VVL+ N+KP K+R + S+ +VLCAS E KVEPL PPEG+ G+ + G + GKP+D L PKKK EK+ +L + VA +K MT G T K Sbjct: 367 SRLDIRVGKVISVEKHPDADSLYLEKIDVGEEQPRTVVSGLVAYITEEQLQDRLVVLLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCKTLKG 525
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_CHICK (Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.775e-28 Identity = 70/150 (46.67%), Postives = 94/150 (62.67%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASN-EDHTKVEPLLPPEGAKPGEPISFSGI-DGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209 S L+I+VG + KHP ADSL VE+IDVGE + R VVSGL ++ E L +R VVL+ N+KP K+R V S+G+VLCAS+ + +VEPL PP GE + G DG+P+D L PKKK EK+ + E +A +K F+T G Sbjct: 365 SRLDIRVGKVVSVEKHPDADSLYVEKIDVGEPEPRTVVSGLVQFVPKEQLQDRLVVLLCNLKPQKMRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERVYVEGYEDGEPDDELKPKKKVFEKLQADFRISEDCIAQWKERNFLTKLG 514
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: ARC1_SCHPO (tRNA-aminoacylation cofactor arc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC30C2.04 PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 4.507e-27 Identity = 60/141 (42.55%), Postives = 89/141 (63.12%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAK-VRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDG-KPEDVLNPKKKQLEKITPNLFTDEKGVATFK 1182 S+++ ++G I KA KHP+ADSL V I G+A+ R V SGL KY E + R+V+++ N+KP +R V S+ +V CAS+ D + VE +LPPE A+ G+ ++F G D +PE LNPK+K E I P + E + +K Sbjct: 280 SMIDFRIGFIEKAVKHPNADSLYVSTIHCGDAEGPRTVCSGLVKYIPLEQMQQRKVIVVANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGFDTEEPEAQLNPKRKIWEAIQPGFTSGEDLICGYK 420
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYMC_CAEEL (Methionine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.151e-26 Identity = 63/147 (42.86%), Postives = 92/147 (62.59%), Query Frame = 1 Query: 757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFM 1197 + V L+++VG I K KHP AD+L VE+IDVGE+ R VVSGL ++ + + NR VV++ N+KP K+R V S +V+CAS+ D KVE + P +KPG P+ +P++ LNPKKK E + +L +G A +KG P + Sbjct: 755 IDVGRLDMRVGRIIKCEKHPDADALYVEQIDVGESAPRTVVSGLVRHVPLDQMQNRLVVVLCNLKPAKMRGVESRAMVMCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKGQPLL 899
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: ARC1_YEAST (tRNA-aminoacylation cofactor ARC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC1 PE=1 SV=2) HSP 1 Score: 103.605 bits (257), Expect = 7.486e-23 Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 1 Query: 766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVG-EAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGI-DGKPEDVLNPKKKQLEKITPNLFTDEKGVATFK 1182 S ++ +VG I+KA KHP ADSL V IDVG E R V SGL K+ + + R VV++ N+KP +R + S +VLC SN+D KVE + PP+ +K G+ + F G D P LNPKKK E + P+ T++ FK Sbjct: 207 SAIDFRVGFIQKAIKHPDADSLYVSTIDVGDEEGPRTVCSGLVKHFPLDAMQERYVVVVCNLKPVNMRGIKSTAMVLCGSNDD--KVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTNDGLEVIFK 345
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_THEON (Methionine--tRNA ligase OS=Thermococcus onnurineus (strain NA1) GN=metG PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.097e-13 Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 1 Query: 772 LNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPI 1068 L+++VG I HP+AD L V ++D+G +VRQ+V+GL KY S +DL NR VV+I N++P KLR + S+G++L A +D V L+P + K G I Sbjct: 637 LDLRVGKIVDVQDHPNADKLYVVKVDLGN-EVRQLVAGLKKYYSKDDLLNRYVVIIANLEPKKLRGIESQGMLLAA--DDGENVALLMPDKEVKLGARI 732
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_PYRFU (Methionine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=metG PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.059e-13 Identity = 41/103 (39.81%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 763 VSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPIS 1071 S +++++G I + HP+AD L V ++D+G ++R +V+GL KY PE+L NR VV++ N++P KLR V S+G++L A +D KV L+P + K G + Sbjct: 625 FSKIDLRIGKIVEVQDHPNADKLYVVKVDLG-GEIRTLVAGLKKYYKPEELLNRYVVIVANLEPKKLRGVESQGMLLAA--DDGEKVALLMPDKEVKLGAKVR 724
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_PYRAB (Methionine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=metG PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.839e-13 Identity = 41/100 (41.00%), Postives = 67/100 (67.00%), Query Frame = 1 Query: 772 LNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPIS 1071 L+++VG I + HP+AD L V ++D+G+ +VR +V+GL KY PE+L NR VV++ N++P KLR + S+G++L A +D +V L+P + K G + Sbjct: 626 LDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLLAA--DDGERVALLMPDKEVKLGAKVR 722 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0020566 ID=g.arboreum_cottongen_reftransV1_0020566; Name=g.arboreum_cottongen_reftransV1_0020566; organism=Gossypium arboreum; type=contig; length=1485bpback to top |