g.arboreum_cottongen_reftransV1_0020566, g.arboreum_cottongen_reftransV1_0020566 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020566
Unique Nameg.arboreum_cottongen_reftransV1_0020566
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0020566:1..1485 .
Chr9:83401814..83406570 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FZ64_THECC (OB-fold nucleic acid binding domain-containing protein isoform 5 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 480.715 bits (1236), Expect = 2.858e-164
Identity = 271/337 (80.42%), Postives = 293/337 (86.94%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSG 1080
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE       S   KK     +    +KKAPE EASDKDKELSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSG
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAE--VNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSG 335
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FRZ8_THECC (OB-fold nucleic acid binding domain-containing protein isoform 6 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 480.33 bits (1235), Expect = 4.228e-164
Identity = 263/361 (72.85%), Postives = 283/361 (78.39%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLF 1152
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ      K  V    K     T+ +DK D E                                      LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP  F
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQKKAKGDKEAVQEKKKAP--ETEASDK-DKE--------------------------------------LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPVCF 320
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: B9S4F8_RICCO (Methionyl-tRNA synthetase, putative OS=Ricinus communis GN=RCOM_0690060 PE=4 SV=1)

HSP 1 Score: 476.478 bits (1225), Expect = 8.489e-162
Identity = 271/392 (69.13%), Postives = 304/392 (77.55%), Query Frame = 1 
Query:   73 ATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQ-NNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            A N +  +KR Q I S+L KH SL      S+  G+DIK+LY+NILKSSGK S Q  NDEVMKWI FA+SFP D+ AC+  LN LN  LA KSVLLGNG TPSEADVIVFSVIHSSVI LS  EKEKL  VMRWMDYIQ+ E      E+ILLEKP FEP   KA AK EV S+ K ++Q+TK  +KPDAE + KKSD+     + +  +E     +    E   +   +SVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAK+RQVVSGLAK+C+P++L NR VVLITNVKPGKLRDV SEGLVLCASN DH+ VEPLLPPEGAK GE +SFSG DGKPEDVLNPKKKQLEKITPNLFTD+KGVATFKGIPFMTS GPCTSSIPKASIK
Sbjct:    3 AANESITLKRNQLIASALSKHLSLHSGTSLSECRGDDIKSLYVNILKSSGKWSQQKENDEVMKWIDFAESFPVDTSACFNALNGLNQHLALKSVLLGNGVTPSEADVIVFSVIHSSVIGLSHSEKEKLTQVMRWMDYIQHKETFVDPAERILLEKPAFEPLSTKAVAKIEVDSNVKKSMQSTKNTEKPDAEHSRKKSDAGKKVTEKESVQEKKKPAQTEPAEKEKE---VSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKFCTPDELMNRHVVLITNVKPGKLRDVASEGLVLCASNGDHSVVEPLLPPEGAKIGERVSFSGFDGKPEDVLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSGGPCTSSIPKASIK 391
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A067FJD9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015335mg PE=4 SV=1)

HSP 1 Score: 474.937 bits (1221), Expect = 4.995e-161
Identity = 279/413 (67.55%), Postives = 307/413 (74.33%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQ------------NTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MA NG+ +  RKQ IVS LCKH SLD K FSS     DIKTLY +ILKSSGK S   NDEVMKWI FA+SFP DSKAC+  L +LN +LA KSVLLGNG   SEADVIVFS +HS V+ L+  ++ K+PHVMRWMDYIQ+ E LG  F  I LEKP FEP +    AK  V S+AK TVQ            N K  D    +   ++       +    DK             +KK+ E  A DKDKELSVSLLNIQVGLIRK+WKHPSADSLLVEEIDVGEAK+RQVVSGLAKYC+P+DLTNRRV LITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAK GE ISFSGIDGKPE+VLNPKKKQLEKITPNLFTD+KGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MAANGSKNPTRKQLIVSILCKHLSLDHKDFSSNAAEKDIKTLYSDILKSSGKSS---NDEVMKWIEFAESFPADSKACFDVLIKLNEELATKSVLLGNGLRTSEADVIVFSAVHSFVVGLANLDQGKMPHVMRWMDYIQSKEALGDLFGTISLEKPGFEPPLH--GAKSAVDSNAKKTVQSTNHAEKSEAPSNLKSGDAKKGDTALQEKKKSVETEAVDKDKTKKAVGDKEAGQEKKKSSETAAVDKDKELSVSLLNIQVGLIRKSWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCNPDDLTNRRVALITNVKPGKLRDVMSEGLVLCASNEDHTNVEPLLPPEGAKIGERISFSGIDGKPEEVLNPKKKQLEKITPNLFTDDKGVATFKGIPFMTSAGPCTSSIPKASIK 408
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A067JFS8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03314 PE=4 SV=1)

HSP 1 Score: 474.552 bits (1220), Expect = 5.221e-161
Identity = 272/384 (70.83%), Postives = 310/384 (80.73%), Query Frame = 1 
Query:   94 IKRKQGIVSSLCKHFSLDPKAFSSQVPGND-IKTLYINILKSSGKESPQ-NNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKAS 1239
            +KRKQ + S+L KH  L+   + + V G D IK+LY NILKSSGK  PQ  NDEVMKWI FA+SFP DS+AC+  LN LN +LA KSV+LGNG TPSE DVIVFSV+H SVI LS  E+EKL +VMRWMDYIQN E+L   FEKILLEKP+FEP  A+ AAK E+ S+AK   QNTK  +K +A+KN KKSD+     ++K  K+   +    E    DK+  +SVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE+K+RQVVSGLAKYCSP++LTNRRVVLITNVK GKLRDVMSEGLVLCASNEDH+ VEPLLPPEGAK GE ISFSGIDGKPEDVLNPKKKQL+KITPNLFTD+KGVAT+KGIPFMTS GPCTSSIPK S
Sbjct:   10 LKRKQTVASALSKHLDLN---YGASVSGEDNIKSLYTNILKSSGKWLPQKENDEVMKWIEFAESFPIDSQACFDALNRLNQELAPKSVILGNGLTPSEVDVIVFSVVHPSVIRLSHSEREKLTYVMRWMDYIQNKEELVDLFEKILLEKPLFEPLGARDAAKAEIDSNAKKISQNTKNTEKSEADKNVKKSDAGAKVTESKDAKQEKKKPPQTEPAEKDKE--VSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGESKLRQVVSGLAKYCSPDELTNRRVVLITNVKSGKLRDVMSEGLVLCASNEDHSVVEPLLPPEGAKIGERISFSGIDGKPEDVLNPKKKQLDKITPNLFTDDKGVATYKGIPFMTSGGPCTSSIPKLS 388
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: B9IQ63_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s08680g PE=4 SV=1)

HSP 1 Score: 474.937 bits (1221), Expect = 1.077e-160
Identity = 269/385 (69.87%), Postives = 309/385 (80.26%), Query Frame = 1 
Query:   94 IKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESP-QNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            ++RKQ I S+L KH SL P+A S  +   DIK+LY+NILKSSGK SP + ++EVMKWI+FA+ FP DS  C+  L+ LN DLA  SVLLGNG TPSEAD+IVFSVIHSSVI LS  E+EKL HVMRWMDYIQN  D G  FEK+LLEK  FE Q  K  AK E+ ++AK TV+NTK  +K +A+ + KKSD+    KK    ++  P +    ++  +    LSVSLLNIQVGLIRKAWKHPSADSLLVEEID+G+AK+RQVVSGLAK+ SP+DLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAK GE +SF GIDGKPEDVLNPKKKQLEKITPNLF+D+KGVATFKGIPFMTS GPCTSSIPKASIK
Sbjct:   45 LQRKQIISSALSKHLSLSPEAPSGDLGEYDIKSLYLNILKSSGKRSPSKESEEVMKWISFAEIFPIDSPTCFDALSGLNKDLALNSVLLGNGLTPSEADIIVFSVIHSSVIGLSHLEREKLVHVMRWMDYIQNKVDFGKLFEKVLLEKGAFELQGIKGDAKSEIDTNAKKTVENTKNKEKSEADLSMKKSDNKSTGKKESAQEKKKPSETEAGEKDKE----LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDIGDAKLRQVVSGLAKFYSPDDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTIVEPLLPPEGAKVGERVSFLGIDGKPEDVLNPKKKQLEKITPNLFSDDKGVATFKGIPFMTSGGPCTSSIPKASIK 425
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: D7T4B9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03060 PE=4 SV=1)

HSP 1 Score: 471.47 bits (1212), Expect = 8.445e-160
Identity = 269/384 (70.05%), Postives = 311/384 (80.99%), Query Frame = 1 
Query:   94 IKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            ++RKQ IVSSLCKH SLDPK F   +  NDIK+L  NILKSSG+ +P+N+DEV KWI+FA+S+P DSKAC+G L+ +N +LA+KSVL+G+G  PSEADVIVFS++H  VI L   E++KLPH++RWM+YIQ+ E+ G  F KILLE  V E    K   K E   +AK TVQ+TK AD  + E N     S   KK    +  A  +KK PEKEA +KDKE+S+SLLNIQVGLIRKAWKHPSADSLLVEEIDVG+AK+RQVVSGLAKYCSPE+LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAK GE +SFSG +GKPEDVLNPKKKQLEKITP+LFTD+KGVATFKGIPFMTS GPCT SIPKASIK
Sbjct:   12 LRRKQSIVSSLCKHLSLDPKIFLDSIVENDIKSLCANILKSSGR-APKNSDEVSKWISFAESYPVDSKACFGALHVINEELAEKSVLMGDGLKPSEADVIVFSLLHPFVIGLPNTERQKLPHLVRWMEYIQSKENFGELFPKILLENDVIELPKPKIVVKLEADPNAKKTVQSTKNAD--NTEANPNSKKSDVVKKVTGNNAAAEQKKKLPEKEAVEKDKEVSISLLNIQVGLIRKAWKHPSADSLLVEEIDVGDAKLRQVVSGLAKYCSPEELTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTGVEPLLPPEGAKIGERVSFSGNEGKPEDVLNPKKKQLEKITPHLFTDDKGVATFKGIPFMTSGGPCTCSIPKASIK 392
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: M5X055_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006649mg PE=4 SV=1)

HSP 1 Score: 464.151 bits (1193), Expect = 6.782e-157
Identity = 264/401 (65.84%), Postives = 316/401 (78.80%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKE-SPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFE------PQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MA NG++ + RK+ I S+LCKHF LDPK F   +  ++I + Y  ILKS+  + S +  D V++WI +AD FP D +A +  L  LN  LA  SVLLGNGFTPSEADVIVF+V+HSSVI LS  +++KLPH++RW+D+IQN  D G   +KI++EK  F+       + AK+A K E+ S+AK TVQ+ K ADKP+A+ N KKSD+       K   +   ++K      EA +KDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVG+AK+RQVVSGLAKYCSPE+LTNR+VVLITNVKPGKLRDV SEGLVLCASNEDHT+VEPLLPPEGA+PGE +SFSG+DGKPEDVLNPKKKQLEKITP+LFTD+KGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MAANGSTSLDRKRLIASALCKHFYLDPKTFPENIAEDEITSFYTTILKSAKNDASVEVQDGVLQWIRYADGFPTDPQAFFEVLKGLNDTLADVSVLLGNGFTPSEADVIVFAVVHSSVIGLSNSDRQKLPHLLRWVDHIQNKVDFGDLLKKIVIEKVPFDFLKLYALRGAKSAGKVEIDSNAKKTVQSAKSADKPEADLNTKKSDAEIKATGDKKTDKKATQEKKKSPETEAVEKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGDAKLRQVVSGLAKYCSPEELTNRKVVLITNVKPGKLRDVASEGLVLCASNEDHTRVEPLLPPEGARPGERVSFSGVDGKPEDVLNPKKKQLEKITPHLFTDDKGVATFKGIPFMTSAGPCTSSIPKASIK 401
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: R0HSK8_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10023092mg PE=4 SV=1)

HSP 1 Score: 455.292 bits (1170), Expect = 4.720e-152
Identity = 259/403 (64.27%), Postives = 315/403 (78.16%), Query Frame = 1 
Query:   46 RKREENPDMAT--NGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            R+R +  ++A   N T D K KQ I+S+LCKHFSLDP+ F      +D+KTLY N+LK+SGKE    N+EV+KW+ F+++FP  SK C+  L +LN +LA KSVLLGNG TPS ADV VFS +HSSV+ LS  +KEK+PHV+RW++YIQN EDL   F  I ++  VF+ +++K+  K E  S+AK   +  K  DK + +   KK++  + KKKA  +K+A  EKK P +   ++KD ELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE KVRQVVSGLAK+C+P+DL NR V LITNVKPGKLRDVMS+GLVLCASNEDH+ VEPLLPP GAKPGE +SFSGI+GKPEDVLNPKKKQLEKITP L+TDE GVAT+KGIPFMTSAGPCTSSIPKA+IK
Sbjct:   87 RRRTQISEIAKEKNFTMDSKTKQMILSALCKHFSLDPENFLGGASQSDVKTLYSNVLKASGKEVSAQNNEVLKWLDFSEAFPAISKDCFAALEKLNVELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSDKEKVPHVIRWINYIQNKEDLSTLFAPIPVKLSVFDFEVSKSVPKVEANSNAKKATEGVKPVDKSEVQPITKKTEPEEPKKKATKEKDAKKEKKKPAETEPANKDVELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEEKVRQVVSGLAKFCNPDDLANRLVALITNVKPGKLRDVMSQGLVLCASNEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPKKKQLEKITPGLYTDENGVATYKGIPFMTSAGPCTSSIPKATIK 489
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: D7LFT2_ARALL (tRNA-binding region domain-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483125 PE=4 SV=1)

HSP 1 Score: 450.284 bits (1157), Expect = 1.600e-151
Identity = 250/388 (64.43%), Postives = 294/388 (75.77%), Query Frame = 1 
Query:   91 DIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAE---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            D K KQ I+S+LCKHFSLDP+ F      +D++TLY N+LK+SGKE    NDEV+KW+ FA+ F  +SK CY  L +LN +LA KSVLLGNG TPS ADV VFS +HSSV+ LS   KEK+PHV+RW++YIQN E+L   F  I ++ P F+ +++K A K E  S+ K   +  K  DK DA+      K       K   K       +KK  E E + K+ ELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGE KVRQVVSGLAK+C+P+DLTNR V LITNVKPGKLRDVMS+GLVLCAS+EDH+ VEPLLPP GAKPGE +SFSGI+GKPEDVLNPKKKQLEKITP L+TDE GVAT+KGIPFMTSAGPCTSSIPKA+IK
Sbjct:    2 DSKTKQMILSALCKHFSLDPEPFLGGAGDSDVRTLYSNVLKASGKEVSAQNDEVLKWLDFAEGFSANSKDCYAALEKLNLELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSNKEKVPHVIRWVNYIQNKEELSTLFAPIPVKLPEFDFEVSKPAIKVEANSNTKKAAEGVKPVDKSDAQPQPITKKTEPEEPKKNATKEKDAKKEKKKPAESEPAKKEAELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCNPDDLTNRLVALITNVKPGKLRDVMSQGLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPKKKQLEKITPGLYTDENGVATYKGIPFMTSAGPCTSSIPKATIK 389
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.055e-41
Identity = 84/164 (51.22%), Postives = 113/164 (68.90%), Query Frame = 1 
Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPC-TSSIPKASIK 1245
            ++V+ L+I+VGLIRKA KHP ADSL VEEIDVGE   R VVSGL K+   E++ NR+V ++ N+KP  +R + S  +VL ASNEDHTKVE + PPE A  GE ++F+G  G+PE  LN K K  EK++ +L ++ + VA +K +PF TSAG C   SI    I+
Sbjct:  638 VTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQNRKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYMC_ARATH (Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.358e-41
Identity = 82/164 (50.00%), Postives = 116/164 (70.73%), Query Frame = 1 
Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPC-TSSIPKASIK 1245
            ++++ L+I+VG I KA KHP AD+L VEEIDVG  ++R VVSGL KY   E++ NR V ++ N+KP K+RD++S+ +VL AS+ D +KVE + PP+ A  GE ++F G +G+P+DVLNPKKK  E +  +L T E  VA +K +PF TSAG C  SSI   +I+
Sbjct:  634 ITMARLDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.931e-38
Identity = 74/156 (47.44%), Postives = 107/156 (68.59%), Query Frame = 1 
Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF-MTSAGPCTS 1221
            + VS L++++G I  A KHP ADSL VEE+DVGE   R VVSGL  +   E + NR V+L+ N+KP K+R V+S+ +V+CAS+ +  K+E L PP G+ PG+ I+F    G+P+  LNPKKK  E+I P+L T+++ VAT+KG+PF +   G C +
Sbjct:  150 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRA 303
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.202e-38
Identity = 74/146 (50.68%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF 1194
            +  S L++++G I  A KHP ADSL VEE+DVGEA  R VVSGL  +   E + NR VVL+ N+KP K+R V+S+ +V+CAS+ +  KVE L PP G+ PG+ I+F    G+P+  LNPKKK  E+I P+L T+ + VAT+KG PF
Sbjct:  148 IDASRLDLRIGCIVTAKKHPDADSLYVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPF 291
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.904e-36
Identity = 71/146 (48.63%), Postives = 101/146 (69.18%), Query Frame = 1 
Query:  757 LSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPF 1194
            + VS L++++G I    KHP ADSL VEE+DVGEA  R V+SGL  +   + + NR VVL+ N+KP K+R ++S+ +V+CAS+ +  KVE L PP G+ PG+ I+F    G+P+  LNPKKK  E+I P+L T+ + VAT+KG PF
Sbjct:  197 VDVSRLDLRIGRIVTVKKHPDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPF 340
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_XENLA (Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.180e-31
Identity = 76/170 (44.71%), Postives = 101/170 (59.41%), Query Frame = 1 
Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNE-DHTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK*KTKTIRG 1269
            SLL+++VG I    +HP ADSL VE +DVGEA  R VVSGL +Y   + L  R VVL+ N+KP K+R + S+G++LCAS E +  +VEPL PP G+ PGE I   G + G+PE  L PKKK  EK+  +    +   A +KG  F+T  G  T            KT+RG
Sbjct:  366 SLLDLRVGKILSVSQHPDADSLYVESVDVGEANPRCVVSGLVQYVPSDQLLGRSVVLLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVT-----------CKTLRG 524
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_MOUSE (Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 2.792e-31
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTK-VEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209
            S L+I+VG I    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  ++ VEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    E+ +A +K   FMT  G
Sbjct:  366 SRLDIRVGKILSVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_HUMAN (Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4)

HSP 1 Score: 129.798 bits (325), Expect = 3.070e-31
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209
            S L+I+VG I    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  + +VEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    E+ +A +K   FMT  G
Sbjct:  366 SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 3.783e-31
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAG 1209
            S L+I+VG I    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  + +VEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    E+ +A +K   FMT  G
Sbjct:  366 SRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLG 515
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 6.085e-31
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:  766 SLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNED-HTKVEPLLPPEGAKPGEPISFSGID-GKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCT 1218
            S L+I+VG +    KHP ADSL VE+IDVGEA+ R VVSGL ++   E+L +R VV++ N+KP K+R V S+G++LCAS E  + KVEPL PP G+ PGE +   G + G+P++ L PKKK  EK+  +    ++ +A +K   FMT  G  +
Sbjct:  366 SRLDIRVGKVISVDKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVS 518
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061FZ64_THECC2.858e-16480.42OB-fold nucleic acid binding domain-containing pro... [more]
A0A061FRZ8_THECC4.228e-16472.85OB-fold nucleic acid binding domain-containing pro... [more]
B9S4F8_RICCO8.489e-16269.13Methionyl-tRNA synthetase, putative OS=Ricinus com... [more]
A0A067FJD9_CITSI4.995e-16167.55Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
A0A067JFS8_JATCU5.221e-16170.83Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
B9IQ63_POPTR1.077e-16069.87Uncharacterized protein OS=Populus trichocarpa GN=... [more]
D7T4B9_VITVI8.445e-16070.05Putative uncharacterized protein OS=Vitis vinifera... [more]
M5X055_PRUPE6.782e-15765.84Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
R0HSK8_9BRAS4.720e-15264.27Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
D7LFT2_ARALL1.600e-15164.43tRNA-binding region domain-containing protein OS=A... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SYM_ORYSJ1.055e-4151.22Probable methionine--tRNA ligase OS=Oryza sativa s... [more]
SYMC_ARATH8.358e-4150.00Methionine--tRNA ligase, cytoplasmic OS=Arabidopsi... [more]
AIMP1_HUMAN1.931e-3847.44Aminoacyl tRNA synthase complex-interacting multif... [more]
AIMP1_MOUSE3.202e-3850.68Aminoacyl tRNA synthase complex-interacting multif... [more]
AIMP1_CRIGR2.904e-3648.63Aminoacyl tRNA synthase complex-interacting multif... [more]
SYYC_XENLA1.180e-3144.71Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laev... [more]
SYYC_MOUSE2.792e-3148.00Tyrosine--tRNA ligase, cytoplasmic OS=Mus musculus... [more]
SYYC_HUMAN3.070e-3148.00Tyrosine--tRNA ligase, cytoplasmic OS=Homo sapiens... [more]
SYYC_PONAB3.783e-3148.00Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii... [more]
SYYC_BOVIN6.085e-3146.41Tyrosine--tRNA ligase, cytoplasmic OS=Bos taurus G... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 237..331
e-value: 3.7E-26
score: 90.9
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 231..334
score: 29.879
IPR010987Glutathione S-transferase, C-terminal-likeGENE3D1.20.1050.10coord: 82..150
e-value: 8.0E-5
score: 21.8
IPR010987Glutathione S-transferase, C-terminal-likeSUPERFAMILY47616GST C-terminal domain-likecoord: 49..147
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 232..386
e-value: 9.2E-43
score: 145.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 231..383
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 4..392
NoneNo IPR availablePANTHERPTHR11586:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 4..392

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020566 ID=g.arboreum_cottongen_reftransV1_0020566; Name=g.arboreum_cottongen_reftransV1_0020566; organism=Gossypium arboreum; type=contig; length=1485bp
CAAAAACCCTACGTCTGTTTCTTGGTCTAAATAGCTCTTCAAGGGAGAAA
AAGAGAAGAAAACCCAGACATGGCAACCAATGGAACCAGTGATATCAAAA
GGAAGCAAGGAATAGTATCATCTCTTTGCAAGCACTTCTCTTTGGATCCT
AAGGCTTTTTCAAGTCAAGTCCCTGGAAATGATATTAAGACCCTTTACAT
AAACATTTTGAAGTCATCAGGGAAGGAGTCACCGCAAAATAACGATGAGG
TGATGAAGTGGATAGCTTTTGCAGACAGCTTTCCTGGTGATTCTAAGGCA
TGCTATGGTGGTTTGAATGAATTAAACACTGACTTGGCTAAAAAATCTGT
ACTTTTGGGCAATGGATTTACACCCTCAGAAGCCGATGTTATTGTTTTTT
CAGTCATACATAGTTCAGTGATTGCCCTTTCAACTCCAGAGAAGGAGAAA
TTGCCACATGTGATGCGATGGATGGATTATATCCAGAATAGTGAGGATCT
TGGTGCACATTTTGAGAAGATATTGCTGGAGAAGCCTGTTTTTGAGCCTC
AGATGGCAAAAGCTGCAGCTAAGCCAGAAGTAACTTCAAGTGCTAAAGGG
ACTGTTCAAAACACAAAAATTGCAGACAAGCCAGATGCAGAAAAAAATGC
AAAGAAAAGTGATTCCGTGGATGCCAAGAAAAAGGCTAAGGGAGATAAGG
AAGCTGTTCCAGAGAAGAAAGCACCTGAAAAAGAAGCATCTGATAAAGAC
AAAGAACTCAGTGTCAGTTTACTGAATATACAGGTTGGTCTTATACGTAA
AGCATGGAAACATCCATCTGCTGATAGTTTACTGGTAGAGGAGATAGATG
TCGGAGAGGCTAAAGTACGACAGGTTGTTAGTGGATTGGCCAAGTATTGC
AGTCCAGAAGACTTGACGAATCGTCGTGTTGTGCTGATTACAAATGTAAA
ACCTGGAAAGCTACGAGATGTGATGTCAGAGGGACTGGTGCTTTGTGCTT
CTAATGAAGATCATACCAAGGTAGAGCCATTACTGCCCCCTGAAGGTGCT
AAACCTGGCGAGCCCATTTCATTTTCAGGGATCGATGGAAAGCCAGAAGA
TGTCCTAAATCCAAAGAAGAAGCAGTTGGAGAAAATAACACCGAATCTTT
TCACTGATGAGAAGGGTGTGGCCACATTTAAAGGTATTCCATTTATGACC
TCAGCAGGGCCATGCACATCTTCCATTCCTAAAGCTAGCATCAAATGAAA
GACAAAAACGATACGTGGACGCACATGTTACCCTTTGTAAGGTTCCAATT
GTAGTTCTAGCAGTCAACATTGCTTGCTGCTGGAACAAAAAAGAGCCCTT
GTAAGATGCAATTGTTTTTTTTTTAACTCACTGAATTGTCGTTCCTTGTC
CCTCACAATCTAACATCAAAGAATTTTGTTTCTAGTACATTCATTTGGAA
TTTGGTGATCCAGAAAATTAAGCAAAAAATATTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR010987Glutathione-S-Trfase_C-like
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding