g.arboreum_cottongen_reftransV1_0020566, g.arboreum_cottongen_reftransV1_0020566 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0020566
Unique Nameg.arboreum_cottongen_reftransV1_0020566
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr9chromosomeg.arboreum_cottongen_reftransV1_0020566:1..1485 .
Chr9:83401814..83406570 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0B0N3L3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_34425 PE=4 SV=1)

HSP 1 Score: 682.174 bits (1759), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSVIALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEKNAKKSDSVDAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSVIALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEKNAKKSDSVDAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 392
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2UW45_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 662.914 bits (1709), Expect = 0.000e+0
Identity = 383/392 (97.70%), Postives = 387/392 (98.72%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD EKNAKKSDS DAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTEKNAKKSDSADAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 392
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2RQS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 658.677 bits (1698), Expect = 0.000e+0
Identity = 374/392 (95.41%), Postives = 380/392 (96.94%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD E   K +   D+ KKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTE---KNAKKSDSAKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 389
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2UWF8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 595.119 bits (1533), Expect = 0.000e+0
Identity = 350/361 (96.95%), Postives = 354/361 (98.06%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLF 1152
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD EKNAKKSDS DAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSGIDGKPEDVLNPKKKQLEKITP  F
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTEKNAKKSDSADAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITPVCF 361
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FTH7_THECC (OB-fold nucleic acid binding domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 586.645 bits (1511), Expect = 0.000e+0
Identity = 320/392 (81.63%), Postives = 345/392 (88.01%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE NAKKSDS    K  K   +   +    E    DK+  LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP+LFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKE--LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 390
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FRZ3_THECC (OB-fold nucleic acid binding domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 320/411 (77.86%), Postives = 345/411 (83.94%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSG-------------------IDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE NAKKSDS    K  K   +   +    E    DK+  LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSG                   IDGKP+DVLNPKKKQLEKITP+LFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKE--LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGHCCLSLLNVWSVLVQLILRIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 409
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A0D2VPV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 328/337 (97.33%), Postives = 332/337 (98.52%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSG 1080
            MATNGTSD+KRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFP DSKAC+GGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSS+IALSTPEKEKLPHVMRWMDYIQNSEDLGA FEKILLEKPVFEPQ+AKAAAKPEVTSSAKGTVQNTKIADKPD EKNAKKSDS DAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGE ISFSG
Sbjct:    1 MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIALSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTVQNTKIADKPDTEKNAKKSDSADAKKKAKGDKEAVPEKKAPEKEASDKDKELSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSG 337
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FSM4_THECC (OB-fold nucleic acid binding domain-containing protein isoform 7 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 546.969 bits (1408), Expect = 0.000e+0
Identity = 295/392 (75.26%), Postives = 316/392 (80.61%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 1245
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ      K  V    K     T+ +DK D E                                      LSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP+LFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQKKAKGDKEAVQEKKKAP--ETEASDK-DKE--------------------------------------LSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPHLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 351
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FSM1_THECC (OB-fold nucleic acid binding domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 518.85 bits (1335), Expect = 1.348e-178
Identity = 292/361 (80.89%), Postives = 315/361 (87.26%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVLNPKKKQLEKITPNLF 1152
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE       S   KK     +    +KKAPE EASDKDKELSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSGIDGKP+DVLNPKKKQLEKITP  F
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAE--VNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPVCF 359
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Match: A0A061FT10_THECC (OB-fold nucleic acid binding domain-containing protein isoform 4 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 481.871 bits (1239), Expect = 1.408e-164
Identity = 272/346 (78.61%), Postives = 297/346 (85.84%), Query Frame = 1 
Query:   70 MATNGTSDIKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGKESPQNNDEVMKWIAFADSFPGDSKACYGGLNELNTDLAKKSVLLGNGFTPSEADXXXXXXXXXXXXALSTPEKEKLPHVMRWMDYIQNSEDLGAHFEKILLEKPVFEPQMAKAAAKPEVTSSAKGTVQNTKIADKPDAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVSLLNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPISFSGIDGKPEDVL 1107
            MAT+G +D KR+Q IVSS+CKHFSLDPKAFSS+VPGNDIK LY+NILKSSGKESP+NNDEVMKWIAFA+SFP DSKAC+G LNELN DLA+KSVLLGNGFTPSEADVIVFS +H+SVI LS  EK+KLPHVMRWMDYIQ+ EDLGA F+KILLEKP FEPQ AKAAAKPE+  +AK TVQ+TKIADK  AE       S   KK     +    +KKAPE EASDKDKELSVSLLNIQVGLI KAWKHPSADSLLVEEIDVGEAK+RQVVSGLAKYCSPE LTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHT VEPLLPPEGAKPGE +SFSG+    +D +
Sbjct:    1 MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGKESPKNNDEVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIGLSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTVQSTKIADKSVAE--VNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGLICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGLFSGHQDTV 344
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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_THEKO (Methionine--tRNA ligase OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=metG PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.918e-13
Identity = 43/99 (43.43%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:  772 LNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPI 1068
            L+++VG I +   HP+AD L V ++D+G+ +VRQ+V+GL KY  PE+L    VV+I N++P KLR V S+G++L A  +D  +V  L+P +  K G  I
Sbjct:  645 LDLRVGKIIEVNDHPNADRLYVVKVDLGD-EVRQLVAGLKKYYKPEELLGHYVVIIANLEPKKLRGVESQGMLLAA--DDGERVALLMPDKEVKLGARI 740
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_ACIAD (Methionine--tRNA ligase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) GN=metG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.711e-13
Identity = 40/100 (40.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:  772 LNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGEPIS 1071
            ++++V L+++A     +D LL   +DVGEA+ R V SG+ ++  PEDL  + VV++ N+ P K+R  +S G+VL A N D   V  + P  GAKPG+ +S
Sbjct:  588 VDLRVALVQEAATVEGSDKLLQLTLDVGEAEPRNVFSGIREFYQPEDLKGKLVVMVANLAPRKMRFGISNGMVLAAGNGDGVWV--ISPDSGAKPGDKVS 685
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_LISIN (Methionine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=metG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.260e-12
Identity = 31/79 (39.24%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  772 LNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNE 1008
            ++++V  +++  K   AD LL  ++D+GE K+RQV+SG+A++  PE+L  ++V++++N+KP KLR +MSEG++L    +
Sbjct:  567 IDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVSNLKPVKLRGLMSEGMILSGEKD 645
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_LISMF (Methionine--tRNA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=metG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.295e-12
Identity = 31/79 (39.24%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  772 LNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNE 1008
            ++++V  +++  K   AD LL  ++D+GE K+RQV+SG+A++  PE+L  ++V++++N+KP KLR +MSEG++L    +
Sbjct:  568 IDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVSNLKPVKLRGLMSEGMILSGEKD 646
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Match: SYM_LISMO (Methionine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=metG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.375e-12
Identity = 31/79 (39.24%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  772 LNIQVGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDVMSEGLVLCASNE 1008
            ++++V  +++  K   AD LL  ++D+GE K+RQV+SG+A++  PE+L  ++V++++N+KP KLR +MSEG++L    +
Sbjct:  567 IDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVSNLKPVKLRGLMSEGMILSGEKD 645
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0N3L3_GOSAR0.000e+0100.00Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0D2UW45_GOSRA0.000e+097.70Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RQS7_GOSRA0.000e+095.41Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2UWF8_GOSRA0.000e+096.95Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FTH7_THECC0.000e+081.63OB-fold nucleic acid binding domain-containing pro... [more]
A0A061FRZ3_THECC0.000e+077.86OB-fold nucleic acid binding domain-containing pro... [more]
A0A0D2VPV8_GOSRA0.000e+097.33Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061FSM4_THECC0.000e+075.26OB-fold nucleic acid binding domain-containing pro... [more]
A0A061FSM1_THECC1.348e-17880.89OB-fold nucleic acid binding domain-containing pro... [more]
A0A061FT10_THECC1.408e-16478.61OB-fold nucleic acid binding domain-containing pro... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0020566 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SYM_THEKO4.918e-1343.43Methionine--tRNA ligase OS=Thermococcus kodakarens... [more]
SYM_ACIAD5.711e-1340.00Methionine--tRNA ligase OS=Acinetobacter baylyi (s... [more]
SYM_LISIN1.260e-1239.24Methionine--tRNA ligase OS=Listeria innocua serova... [more]
SYM_LISMF1.295e-1239.24Methionine--tRNA ligase OS=Listeria monocytogenes ... [more]
SYM_LISMO1.375e-1239.24Methionine--tRNA ligase OS=Listeria monocytogenes ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 237..331
e-value: 3.7E-26
score: 90.9
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 231..334
score: 29.879
IPR010987Glutathione S-transferase, C-terminal-likeGENE3D1.20.1050.10coord: 82..150
e-value: 8.0E-5
score: 21.8
IPR010987Glutathione S-transferase, C-terminal-likeSUPERFAMILY47616GST C-terminal domain-likecoord: 49..147
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 232..386
e-value: 9.2E-43
score: 145.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 231..383
NoneNo IPR availablePANTHERPTHR11586FAMILY NOT NAMEDcoord: 4..392
NoneNo IPR availablePANTHERPTHR11586:SF1NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEINcoord: 4..392

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0020566 ID=g.arboreum_cottongen_reftransV1_0020566; Name=g.arboreum_cottongen_reftransV1_0020566; organism=Gossypium arboreum; type=contig; length=1485bp
CAAAAACCCTACGTCTGTTTCTTGGTCTAAATAGCTCTTCAAGGGAGAAA
AAGAGAAGAAAACCCAGACATGGCAACCAATGGAACCAGTGATATCAAAA
GGAAGCAAGGAATAGTATCATCTCTTTGCAAGCACTTCTCTTTGGATCCT
AAGGCTTTTTCAAGTCAAGTCCCTGGAAATGATATTAAGACCCTTTACAT
AAACATTTTGAAGTCATCAGGGAAGGAGTCACCGCAAAATAACGATGAGG
TGATGAAGTGGATAGCTTTTGCAGACAGCTTTCCTGGTGATTCTAAGGCA
TGCTATGGTGGTTTGAATGAATTAAACACTGACTTGGCTAAAAAATCTGT
ACTTTTGGGCAATGGATTTACACCCTCAGAAGCCGATGTTATTGTTTTTT
CAGTCATACATAGTTCAGTGATTGCCCTTTCAACTCCAGAGAAGGAGAAA
TTGCCACATGTGATGCGATGGATGGATTATATCCAGAATAGTGAGGATCT
TGGTGCACATTTTGAGAAGATATTGCTGGAGAAGCCTGTTTTTGAGCCTC
AGATGGCAAAAGCTGCAGCTAAGCCAGAAGTAACTTCAAGTGCTAAAGGG
ACTGTTCAAAACACAAAAATTGCAGACAAGCCAGATGCAGAAAAAAATGC
AAAGAAAAGTGATTCCGTGGATGCCAAGAAAAAGGCTAAGGGAGATAAGG
AAGCTGTTCCAGAGAAGAAAGCACCTGAAAAAGAAGCATCTGATAAAGAC
AAAGAACTCAGTGTCAGTTTACTGAATATACAGGTTGGTCTTATACGTAA
AGCATGGAAACATCCATCTGCTGATAGTTTACTGGTAGAGGAGATAGATG
TCGGAGAGGCTAAAGTACGACAGGTTGTTAGTGGATTGGCCAAGTATTGC
AGTCCAGAAGACTTGACGAATCGTCGTGTTGTGCTGATTACAAATGTAAA
ACCTGGAAAGCTACGAGATGTGATGTCAGAGGGACTGGTGCTTTGTGCTT
CTAATGAAGATCATACCAAGGTAGAGCCATTACTGCCCCCTGAAGGTGCT
AAACCTGGCGAGCCCATTTCATTTTCAGGGATCGATGGAAAGCCAGAAGA
TGTCCTAAATCCAAAGAAGAAGCAGTTGGAGAAAATAACACCGAATCTTT
TCACTGATGAGAAGGGTGTGGCCACATTTAAAGGTATTCCATTTATGACC
TCAGCAGGGCCATGCACATCTTCCATTCCTAAAGCTAGCATCAAATGAAA
GACAAAAACGATACGTGGACGCACATGTTACCCTTTGTAAGGTTCCAATT
GTAGTTCTAGCAGTCAACATTGCTTGCTGCTGGAACAAAAAAGAGCCCTT
GTAAGATGCAATTGTTTTTTTTTTAACTCACTGAATTGTCGTTCCTTGTC
CCTCACAATCTAACATCAAAGAATTTTGTTTCTAGTACATTCATTTGGAA
TTTGGTGATCCAGAAAATTAAGCAAAAAATATTTT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR010987Glutathione-S-Trfase_C-like
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding