g.arboreum_cottongen_reftransV1_0008555, g.arboreum_cottongen_reftransV1_0008555 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008555
Unique Nameg.arboreum_cottongen_reftransV1_0008555
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length967
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: E0CSP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g03190 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 4.837e-54
Identity = 117/174 (67.24%), Postives = 138/174 (79.31%), Query Frame = -2 
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGKESY--CVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLN-DPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNY-GKDTGVRMGN 822
            V + D+IAF LAVAAEQRRSTA V  + +++Y  CVYD DI+TGLGVG+ LFL  SQ +IMV SRC CCGKA+ P GSRAWAV+LFITCW+ F IAE+CLLAGSVRNAYHTKY+ + + DPPSC TLRKGVF AGAAF F TA++SELYYV YSKA  +   Y G++TGV MG 
Sbjct:   10 VLIFDVIAFGLAVAAEQRRSTAQVVTDSEDNYKYCVYDSDISTGLGVGALLFLFASQAIIMVASRCFCCGKALNPGGSRAWAVILFITCWVTFLIAEICLLAGSVRNAYHTKYRTIFSEDPPSCETLRKGVFGAGAAFTFFTAILSELYYVCYSKARGSFPAYGGRETGVGMGT 183
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A061F673_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031372 PE=4 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.885e-54
Identity = 116/174 (66.67%), Postives = 140/174 (80.46%), Query Frame = -2 
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGK--ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVN-YGKDTGVRMGN 822
            VF++DLIAF LA+AAEQRRSTA +  + +   +YCVYD DIATG GVG+FLFL+ SQ LIMV SRC CCGKA+ PSGSRAWAVVLFI CWLFF IAE+CLLAGSVRNAYHTKY+ + ++ PPSC T+RKGVF AGAAF FLT++V++ YY+ YS A + +   YG +TGV MG 
Sbjct:   10 VFILDLIAFGLAIAAEQRRSTAKIVQDSEVNYNYCVYDSDIATGYGVGAFLFLMASQALIMVASRCFCCGKALNPSGSRAWAVVLFIVCWLFFLIAEICLLAGSVRNAYHTKYRTIFSEQPPSCETVRKGVFGAGAAFIFLTSIVNKFYYICYSSARENSFQAYGGETGVGMGT 183
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A067GFD0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030041mg PE=4 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.354e-54
Identity = 118/173 (68.21%), Postives = 142/173 (82.08%), Query Frame = -2 
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGKESY--CVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822
            VFV DLIAF LAVAAEQRRSTA++  + +++Y  C+YD DI+TG+GVG+FLFLL SQ+LIM+ SRC CCGK + P GSRAWAV+LFI CW+FFFIAEVCLLAGSVRNAYHTKY+ +  + PPSC T+RKGVFAAGAAF F TA+VSE YY+ YSKA ++   YG +TGV MG 
Sbjct:   10 VFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGMGT 182
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: V4ULR8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009639mg PE=4 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.354e-54
Identity = 118/173 (68.21%), Postives = 142/173 (82.08%), Query Frame = -2 
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGKESY--CVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822
            VFV DLIAF LAVAAEQRRSTA++  + +++Y  C+YD DI+TG+GVG+FLFLL SQ+LIM+ SRC CCGK + P GSRAWAV+LFI CW+FFFIAEVCLLAGSVRNAYHTKY+ +  + PPSC T+RKGVFAAGAAF F TA+VSE YY+ YSKA ++   YG +TGV MG 
Sbjct:   10 VFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGGETGVGMGT 182
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0A0L5B8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104340 PE=4 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.452e-52
Identity = 116/171 (67.84%), Postives = 137/171 (80.12%), Query Frame = -2 
Query:  319 VFVIDLIAFALAVAAEQRRSTASVGNN--GKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRM 822
            VFV D+IAF LA+AAEQRRS A +  +   K +YCVYD DI+TGLGVG+FLFLL SQILIMV SRC CCGK + P GSRAWAVVL ITCW+FF IAE+CLLAGS RNAYHTKY+ LL + PPSC  LR+GVFAAGAAF F T++VS+ YYV YS+A ++  +Y KDTG+ M
Sbjct:   10 VFVFDVIAFGLAIAAEQRRSIAKIVEDPGAKTNYCVYDSDISTGLGVGAFLFLLASQILIMVASRCFCCGKPLSPGGSRAWAVVLLITCWVFFLIAEICLLAGSARNAYHTKYRTLLTETPPSCQMLRRGVFAAGAAFIFFTSIVSQFYYVCYSRARESFQSYSKDTGIGM 180
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
E0CSP2_VITVI4.837e-5467.24Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A061F673_THECC6.885e-5466.67Uncharacterized protein OS=Theobroma cacao GN=TCM_... [more]
A0A067GFD0_CITSI7.354e-5468.21Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
V4ULR8_9ROSI7.354e-5468.21Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0A0L5B8_CUCSA1.452e-5267.84Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Protein of unknown function DUF1218PFAMPF06749DUF1218coord: 56..150
e-value: 3.8E-28
score: 97.7
NoneNo IPR availablePANTHERPTHR31769:SF16SUBFAMILY NOT NAMEDcoord: 1..180
NoneNo IPR availablePANTHERPTHR31769FAMILY NOT NAMEDcoord: 1..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..116
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..135
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..157
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..89
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..21
score: 0.735
NoneNo IPR availableTMHMMTMhelixcoord: 137..159
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 48..70

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008555 ID=g.arboreum_cottongen_reftransV1_0008555; Name=g.arboreum_cottongen_reftransV1_0008555; organism=Gossypium arboreum; type=contig; length=967bp
CTTAAAAACTCTTTTATAAATTCCCATGGAGATTACTATATATTATTGAA
AAAATACACTCTCAAATGTCACTCTAATCACTTCACATACTAAAAAAAAT
GAAACACTAAGCGCCTAGAAAACATGCAAAATGCTTAGCCAGAAACCTGC
AACGTAAAGTGGGAAAAACACAAGTACATGTCCATGTCCATGGTAAGACG
CATGTATACTAAATCACACATGCTGTAACCTAAGTTGTCTACAACAGAAA
CATTAAGGTCAATCAACAATGAATAAAATTTTATGACCGCCTCTGAGCAT
ATCCATCTACAGGTTTCCCATCCTCACTCCTGTGTCTTTGCCGTAGTTAA
CTGTTGCATCATTAGCCTTCGAATAACTCACATAGTAAAGCTCAGAGACT
ACGGCTGTTAGGAAAGCAAATGCAGCCCCAGCGGCAAAGACACCCTTTCT
CAGTGTCGCACACGATGGGGGATCATTTAAGAGATTCTTGTACTTGGTGT
GATAAGCATTCCGCACTGACCCTGCCAGCAGGCATACCTCCGCAATGAAA
AAGAACAACCAACAAGTGATGAACAGAACAACTGCCCATGCTCTAGATCC
ACTTGGTCTCATGGCCTTTCCACAGCATAAGCACCGACTTGTCACCATTA
TTAGTATCTGACTAAGCAGAAGGAATAGGAATGAACCCACACCCAAACCA
GTTGCAATATCCTCATCATAAACACAATAACTTTCTTTCCCATTATTGCC
AACAGAGGCAGTACTTCTCCTTTGCTCAGCAGCAACAGCAAGGGCGAAAG
CAATCAGATCAATCACAAAAACCAGAGCCAGTAGCAAGGTTGAAGCCATA
GTTCAAGCAAACAAAGAAGAAGGAAAATCTCGAGAAAATATGAGCCAGAG
AAGCAAAAAGACGCACACAAAAACAGTATTAATCAAAAGCGTTAAGCAAG
TGGAAACAATGCTGAAG
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009606DEAL/Modifying_wall_lignin1/2