g.arboreum_cottongen_reftransV1_0008555, g.arboreum_cottongen_reftransV1_0008555 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008555
Unique Nameg.arboreum_cottongen_reftransV1_0008555
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length967
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: V4TPT3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016887mg PE=4 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.419e-57
Identity = 119/166 (71.69%), Postives = 136/166 (81.93%), Query Frame = -2
Query:  310 IAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPP-SCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 804
            IAF LAVAAEQRRSTA + N    +YC YD+DIATGLG GSFLFLL+SQI+IM  SRCLCCG+AMRPSG+R WA+VLFITCW+FF IAE+CLLAG VRNAYHTKY+  +     SC TLRKGVF AGAAF  LT ++SELYYVSYS+AND   +Y KDTG+RMGNL
Sbjct:   16 IAFGLAVAAEQRRSTAHIANGDGFTYCSYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGLVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRMGNL 181          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0A0L071_CUCSA (Fiber protein Fb34 OS=Cucumis sativus GN=Csa_4G638370 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.992e-57
Identity = 119/173 (68.79%), Postives = 140/173 (80.92%), Query Frame = -2
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGKE--SYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822
            VFV+D+IAF LAVAAEQRRSTA+V  + ++  +YCVYD DI+TG GVG+FL L+ SQ LIM  SRC CCGK++ P GSRAWAV+LFI CW+FFFIAEVCL AGSVRNAYHTKY+ +  D PPSC TLRKGVF AGAAF FL A+VSELYYV YSKA ++ + YG +TGV MG 
Sbjct:   10 VFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFLLLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHTKYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGMGT 182          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9T1A3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0163950 PE=4 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.449e-57
Identity = 118/173 (68.21%), Postives = 139/173 (80.35%), Query Frame = -2
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGK--ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822
            VF+ DLIAF LAVAAEQRRSTA +  + +   +YCVYD DIATG GVG+FLFL+LSQ++IMV S+C CCGKA+ P GSRAWAV+LFITCW+FFFIAEVCLLAGSVRNAYHTKY+ + +D PP C  LRKGVF AGAAF+  T +VS+ YYV YSKA D    YG++TGV MG 
Sbjct:   10 VFIFDLIAFGLAVAAEQRRSTAVIKQDAEVNYNYCVYDSDIATGYGVGAFLFLMLSQVIIMVASQCFCCGKALNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHTKYRTVFSDNPPDCQMLRKGVFGAGAAFSLFTLIVSQFYYVCYSKARDGFQPYGRETGVPMGT 182          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: V7CPW9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G226000g PE=4 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.412e-57
Identity = 119/173 (68.79%), Postives = 139/173 (80.35%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASV-GNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFV DLIAFALAVAAEQRR+TAS+  ++    YC YD DIATGLGVGS   L+ SQ++IMV +RCLCCGKAMRPSGSR+WA+ LFIT W+ F I   CLLAGSVRNAYHTKY++L+ +  PSC TLRKGVFAAGAAF  LT + SELYYVS+SKAN+    Y +D+GVRMGNL
Sbjct:   10 VFVFDLIAFALAVAAEQRRNTASLTEDSAGRKYCEYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITSWVTFIIGASCLLAGSVRNAYHTKYRDLMGERAPSCETLRKGVFAAGAAFIVLTGITSELYYVSFSKANNGPPPYARDSGVRMGNL 182          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B7FH32_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.415e-55
Identity = 120/174 (68.97%), Postives = 139/174 (79.89%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGK-ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATV-NYGKDTGVRMGNL 822
            VFV DLIAFALAVAAEQRRS+A++  N +   YC YD DIATGLGVGS   L+ SQ++IMV +RCLCCG+AMRPSGSR+WA+ LFIT WL F IA  CLLAGSV+NAYHTKY++LL +  PSC TLRKGVF AGAAF  LT +VSELYYVS+SKAN+  V  Y +DTGV M NL
Sbjct:   10 VFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTMSNL 183          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: I3S222_MEDTR (Fiber protein Fb34 OS=Medicago truncatula GN=MTR_4g089100 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.415e-55
Identity = 120/174 (68.97%), Postives = 139/174 (79.89%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGK-ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATV-NYGKDTGVRMGNL 822
            VFV DLIAFALAVAAEQRRS+A++  N +   YC YD DIATGLGVGS   L+ SQ++IMV +RCLCCG+AMRPSGSR+WA+ LFIT WL F IA  CLLAGSV+NAYHTKY++LL +  PSC TLRKGVF AGAAF  LT +VSELYYVS+SKAN+  V  Y +DTGV M NL
Sbjct:   10 VFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTMSNL 183          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9H262_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03890g PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 9.107e-55
Identity = 126/172 (73.26%), Postives = 142/172 (82.56%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPP-SCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VFV DL+AFALAVAAEQRR+TA +   G +SYC YD DIATGLGVGS L L+ SQ+LIMV SRCLCCGKAMRPSGSRAWA+VLFITCW+FFFIAE+CLL  SVRN YHTKY   L+DP  SC  +RKG+F AGAAF  LT +VSELYYVSYSKAND   +Y +DTG+RMGNL
Sbjct:   11 VFVFDLVAFALAVAAEQRRNTAKIEKVGNDSYCRYDSDIATGLGVGSLLLLMASQLLIMVASRCLCCGKAMRPSGSRAWAIVLFITCWVFFFIAEICLLVASVRNGYHTKY---LSDPSHSCQKVRKGIFGAGAAFVVLTGIVSELYYVSYSKANDEQPSYDRDTGIRMGNL 179          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A9P8A6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.422e-54
Identity = 114/172 (66.28%), Postives = 136/172 (79.07%), Query Frame = -2
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGKE--SYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822
            V V D+IAF LAVAAEQRRSTA+V  + ++  SYC+YD DIATG GVG+FLFL+ SQ+LIM  S+C CCGK + P GSRAWAV+L+ITCW+FFFIAE+CLLAGSVRNAYHT+YKN   +   C +LRKGVF AGAAF   TA+VSELYY+ YSKA+D+   YG D GV MG 
Sbjct:   10 VSVFDIIAFGLAVAAEQRRSTATVQPDTEKDYSYCIYDSDIATGFGVGAFLFLMASQVLIMFASKCFCCGKPLSPGGSRAWAVILYITCWVFFFIAEICLLAGSVRNAYHTRYKNFFGETLDCPSLRKGVFGAGAAFTLFTAIVSELYYICYSKASDSFQPYGGDVGVGMGT 181          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9HZX7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12340g PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.448e-54
Identity = 115/172 (66.86%), Postives = 137/172 (79.65%), Query Frame = -2
Query:  313 VFVIDLIAFALAVAAEQRRSTASVGNNGKE--SYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822
            V V D+IAF LAVAAEQRRSTA+V  + ++  SYC+YD DIATGLGVG+FLFL+ SQ+LIM  S+C CCGK + P GSRAWAV+L+ITCW+FFFIAE+CLLAGSVRNAYHT+YKN   +   C +LRKGVF AGAAF   TA+VSELYY+ YSKA+D+   YG D GV MG 
Sbjct:   10 VSVFDIIAFGLAVAAEQRRSTATVQPDTEKDYSYCIYDSDIATGLGVGAFLFLMASQVLIMFASKCFCCGKPLSPGGSRAWAVILYITCWVFFFIAEICLLAGSVRNAYHTRYKNFFGETLDCPSLRKGVFGAGAAFTLFTAIVSELYYICYSKASDSFQPYGGDVGVGMGT 181          
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A068TUF2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029225001 PE=4 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.968e-54
Identity = 115/172 (66.86%), Postives = 138/172 (80.23%), Query Frame = -2
Query:  310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLL-NDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822
            VF+IDLIAFALAVAAEQRR++A+   N   +YCVY+ D+ATGLGVGS L LL SQ+L+M  SRCLCCG+A+RP   R WA+VLFITCWL FFIAEVCLLAGSV+NAYHTKY+ ++  +PPSC TLRKGVF A AAF   T V+SELYYVSYS+A+D  +   +D G+RMG L
Sbjct:   11 VFIIDLIAFALAVAAEQRRASATTTTNATSNYCVYESDVATGLGVGSLLCLLASQLLVMFASRCLCCGRALRPGRPRTWAIVLFITCWLTFFIAEVCLLAGSVKNAYHTKYRTIVSQNPPSCETLRKGVFGAAAAFIVFTGVLSELYYVSYSRADDGYLPNVRDAGIRMGAL 182          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
V4TPT3_9ROSI1.419e-5771.69Uncharacterized protein OS=Citrus clementina GN=CI... [more]
A0A0A0L071_CUCSA2.992e-5768.79Fiber protein Fb34 OS=Cucumis sativus GN=Csa_4G638... [more]
B9T1A3_RICCO4.449e-5768.21Putative uncharacterized protein OS=Ricinus commun... [more]
V7CPW9_PHAVU5.412e-5768.79Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
B7FH32_MEDTR3.415e-5568.97Putative uncharacterized protein OS=Medicago trunc... [more]
I3S222_MEDTR3.415e-5568.97Fiber protein Fb34 OS=Medicago truncatula GN=MTR_4... [more]
B9H262_POPTR9.107e-5573.26Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A9P8A6_POPTR2.422e-5466.28Putative uncharacterized protein OS=Populus tricho... [more]
B9HZX7_POPTR2.448e-5466.86Uncharacterized protein OS=Populus trichocarpa GN=... [more]
A0A068TUF2_COFCA3.968e-5466.86Coffea canephora DH200=94 genomic scaffold, scaffo... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009606Protein of unknown function DUF1218PFAMPF06749DUF1218coord: 56..150
e-value: 3.8E-28
score: 97.7
NoneNo IPR availablePANTHERPTHR31769:SF16SUBFAMILY NOT NAMEDcoord: 1..180
NoneNo IPR availablePANTHERPTHR31769FAMILY NOT NAMEDcoord: 1..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..47
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..116
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..135
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..157
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 158..180
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..89
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..21
score: 0.735
NoneNo IPR availableTMHMMTMhelixcoord: 137..159
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 90..112
NoneNo IPR availableTMHMMTMhelixcoord: 48..70

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008555 ID=g.arboreum_cottongen_reftransV1_0008555; Name=g.arboreum_cottongen_reftransV1_0008555; organism=Gossypium arboreum; type=contig; length=967bp
CTTAAAAACTCTTTTATAAATTCCCATGGAGATTACTATATATTATTGAA
AAAATACACTCTCAAATGTCACTCTAATCACTTCACATACTAAAAAAAAT
GAAACACTAAGCGCCTAGAAAACATGCAAAATGCTTAGCCAGAAACCTGC
AACGTAAAGTGGGAAAAACACAAGTACATGTCCATGTCCATGGTAAGACG
CATGTATACTAAATCACACATGCTGTAACCTAAGTTGTCTACAACAGAAA
CATTAAGGTCAATCAACAATGAATAAAATTTTATGACCGCCTCTGAGCAT
ATCCATCTACAGGTTTCCCATCCTCACTCCTGTGTCTTTGCCGTAGTTAA
CTGTTGCATCATTAGCCTTCGAATAACTCACATAGTAAAGCTCAGAGACT
ACGGCTGTTAGGAAAGCAAATGCAGCCCCAGCGGCAAAGACACCCTTTCT
CAGTGTCGCACACGATGGGGGATCATTTAAGAGATTCTTGTACTTGGTGT
GATAAGCATTCCGCACTGACCCTGCCAGCAGGCATACCTCCGCAATGAAA
AAGAACAACCAACAAGTGATGAACAGAACAACTGCCCATGCTCTAGATCC
ACTTGGTCTCATGGCCTTTCCACAGCATAAGCACCGACTTGTCACCATTA
TTAGTATCTGACTAAGCAGAAGGAATAGGAATGAACCCACACCCAAACCA
GTTGCAATATCCTCATCATAAACACAATAACTTTCTTTCCCATTATTGCC
AACAGAGGCAGTACTTCTCCTTTGCTCAGCAGCAACAGCAAGGGCGAAAG
CAATCAGATCAATCACAAAAACCAGAGCCAGTAGCAAGGTTGAAGCCATA
GTTCAAGCAAACAAAGAAGAAGGAAAATCTCGAGAAAATATGAGCCAGAG
AAGCAAAAAGACGCACACAAAAACAGTATTAATCAAAAGCGTTAAGCAAG
TGGAAACAATGCTGAAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR009606DEAL/Modifying_wall_lignin1/2