g.arboreum_cottongen_reftransV1_0008555, g.arboreum_cottongen_reftransV1_0008555 (contig) Gossypium arboreum
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: V4TPT3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016887mg PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 1.419e-57 Identity = 119/166 (71.69%), Postives = 136/166 (81.93%), Query Frame = -2 Query: 310 IAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPP-SCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 804 IAF LAVAAEQRRSTA + N +YC YD+DIATGLG GSFLFLL+SQI+IM SRCLCCG+AMRPSG+R WA+VLFITCW+FF IAE+CLLAG VRNAYHTKY+ + SC TLRKGVF AGAAF LT ++SELYYVSYS+AND +Y KDTG+RMGNL Sbjct: 16 IAFGLAVAAEQRRSTAHIANGDGFTYCSYDKDIATGLGAGSFLFLLISQIVIMAASRCLCCGRAMRPSGARVWAIVLFITCWVFFLIAEICLLAGLVRNAYHTKYRRYMGGRNLSCETLRKGVFGAGAAFVVLTGIISELYYVSYSRANDGQASYNKDTGIRMGNL 181
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A0A0L071_CUCSA (Fiber protein Fb34 OS=Cucumis sativus GN=Csa_4G638370 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 2.992e-57 Identity = 119/173 (68.79%), Postives = 140/173 (80.92%), Query Frame = -2 Query: 313 VFVIDLIAFALAVAAEQRRSTASVGNNGKE--SYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822 VFV+D+IAF LAVAAEQRRSTA+V + ++ +YCVYD DI+TG GVG+FL L+ SQ LIM SRC CCGK++ P GSRAWAV+LFI CW+FFFIAEVCL AGSVRNAYHTKY+ + D PPSC TLRKGVF AGAAF FL A+VSELYYV YSKA ++ + YG +TGV MG Sbjct: 10 VFVLDIIAFGLAVAAEQRRSTANVVQDKEKEYNYCVYDSDISTGYGVGAFLLLMASQTLIMAASRCFCCGKSLSPGGSRAWAVILFIICWVFFFIAEVCLFAGSVRNAYHTKYRTMFGDNPPSCQTLRKGVFGAGAAFIFLNAIVSELYYVFYSKARESFLPYGGETGVGMGT 182
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9T1A3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0163950 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 4.449e-57 Identity = 118/173 (68.21%), Postives = 139/173 (80.35%), Query Frame = -2 Query: 313 VFVIDLIAFALAVAAEQRRSTASVGNNGK--ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822 VF+ DLIAF LAVAAEQRRSTA + + + +YCVYD DIATG GVG+FLFL+LSQ++IMV S+C CCGKA+ P GSRAWAV+LFITCW+FFFIAEVCLLAGSVRNAYHTKY+ + +D PP C LRKGVF AGAAF+ T +VS+ YYV YSKA D YG++TGV MG Sbjct: 10 VFIFDLIAFGLAVAAEQRRSTAVIKQDAEVNYNYCVYDSDIATGYGVGAFLFLMLSQVIIMVASQCFCCGKALNPGGSRAWAVILFITCWVFFFIAEVCLLAGSVRNAYHTKYRTVFSDNPPDCQMLRKGVFGAGAAFSLFTLIVSQFYYVCYSKARDGFQPYGRETGVPMGT 182
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: V7CPW9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G226000g PE=4 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 5.412e-57 Identity = 119/173 (68.79%), Postives = 139/173 (80.35%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASV-GNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFV DLIAFALAVAAEQRR+TAS+ ++ YC YD DIATGLGVGS L+ SQ++IMV +RCLCCGKAMRPSGSR+WA+ LFIT W+ F I CLLAGSVRNAYHTKY++L+ + PSC TLRKGVFAAGAAF LT + SELYYVS+SKAN+ Y +D+GVRMGNL Sbjct: 10 VFVFDLIAFALAVAAEQRRNTASLTEDSAGRKYCEYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGKAMRPSGSRSWAICLFITSWVTFIIGASCLLAGSVRNAYHTKYRDLMGERAPSCETLRKGVFAAGAAFIVLTGITSELYYVSFSKANNGPPPYARDSGVRMGNL 182
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B7FH32_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 3.415e-55 Identity = 120/174 (68.97%), Postives = 139/174 (79.89%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGK-ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATV-NYGKDTGVRMGNL 822 VFV DLIAFALAVAAEQRRS+A++ N + YC YD DIATGLGVGS L+ SQ++IMV +RCLCCG+AMRPSGSR+WA+ LFIT WL F IA CLLAGSV+NAYHTKY++LL + PSC TLRKGVF AGAAF LT +VSELYYVS+SKAN+ V Y +DTGV M NL Sbjct: 10 VFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTMSNL 183
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: I3S222_MEDTR (Fiber protein Fb34 OS=Medicago truncatula GN=MTR_4g089100 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 3.415e-55 Identity = 120/174 (68.97%), Postives = 139/174 (79.89%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGK-ESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLND-PPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATV-NYGKDTGVRMGNL 822 VFV DLIAFALAVAAEQRRS+A++ N + YC YD DIATGLGVGS L+ SQ++IMV +RCLCCG+AMRPSGSR+WA+ LFIT WL F IA CLLAGSV+NAYHTKY++LL + PSC TLRKGVF AGAAF LT +VSELYYVS+SKAN+ V Y +DTGV M NL Sbjct: 10 VFVFDLIAFALAVAAEQRRSSANLAKNIEGRKYCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICLFITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKANNGGVPPYARDTGVTMSNL 183
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9H262_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03890g PE=4 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 9.107e-55 Identity = 126/172 (73.26%), Postives = 142/172 (82.56%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPP-SCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VFV DL+AFALAVAAEQRR+TA + G +SYC YD DIATGLGVGS L L+ SQ+LIMV SRCLCCGKAMRPSGSRAWA+VLFITCW+FFFIAE+CLL SVRN YHTKY L+DP SC +RKG+F AGAAF LT +VSELYYVSYSKAND +Y +DTG+RMGNL Sbjct: 11 VFVFDLVAFALAVAAEQRRNTAKIEKVGNDSYCRYDSDIATGLGVGSLLLLMASQLLIMVASRCLCCGKAMRPSGSRAWAIVLFITCWVFFFIAEICLLVASVRNGYHTKY---LSDPSHSCQKVRKGIFGAGAAFVVLTGIVSELYYVSYSKANDEQPSYDRDTGIRMGNL 179
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A9P8A6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.422e-54 Identity = 114/172 (66.28%), Postives = 136/172 (79.07%), Query Frame = -2 Query: 313 VFVIDLIAFALAVAAEQRRSTASVGNNGKE--SYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822 V V D+IAF LAVAAEQRRSTA+V + ++ SYC+YD DIATG GVG+FLFL+ SQ+LIM S+C CCGK + P GSRAWAV+L+ITCW+FFFIAE+CLLAGSVRNAYHT+YKN + C +LRKGVF AGAAF TA+VSELYY+ YSKA+D+ YG D GV MG Sbjct: 10 VSVFDIIAFGLAVAAEQRRSTATVQPDTEKDYSYCIYDSDIATGFGVGAFLFLMASQVLIMFASKCFCCGKPLSPGGSRAWAVILYITCWVFFFIAEICLLAGSVRNAYHTRYKNFFGETLDCPSLRKGVFGAGAAFTLFTAIVSELYYICYSKASDSFQPYGGDVGVGMGT 181
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: B9HZX7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12340g PE=4 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.448e-54 Identity = 115/172 (66.86%), Postives = 137/172 (79.65%), Query Frame = -2 Query: 313 VFVIDLIAFALAVAAEQRRSTASVGNNGKE--SYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLLNDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGN 822 V V D+IAF LAVAAEQRRSTA+V + ++ SYC+YD DIATGLGVG+FLFL+ SQ+LIM S+C CCGK + P GSRAWAV+L+ITCW+FFFIAE+CLLAGSVRNAYHT+YKN + C +LRKGVF AGAAF TA+VSELYY+ YSKA+D+ YG D GV MG Sbjct: 10 VSVFDIIAFGLAVAAEQRRSTATVQPDTEKDYSYCIYDSDIATGLGVGAFLFLMASQVLIMFASKCFCCGKPLSPGGSRAWAVILYITCWVFFFIAEICLLAGSVRNAYHTRYKNFFGETLDCPSLRKGVFGAGAAFTLFTAIVSELYYICYSKASDSFQPYGGDVGVGMGT 181
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Match: A0A068TUF2_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_4 OS=Coffea canephora GN=GSCOC_T00029225001 PE=4 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 3.968e-54 Identity = 115/172 (66.86%), Postives = 138/172 (80.23%), Query Frame = -2 Query: 310 VFVIDLIAFALAVAAEQRRSTASVGNNGKESYCVYDEDIATXXXXXXXXXXXXXXXXIMVTSRCLCCGKAMRPSGSRAWAVVLFITCWLFFFIAEVCLLAGSVRNAYHTKYKNLL-NDPPSCATLRKGXXXXXXXXXXXXXXVSELYYVSYSKANDATVNYGKDTGVRMGNL 822 VF+IDLIAFALAVAAEQRR++A+ N +YCVY+ D+ATGLGVGS L LL SQ+L+M SRCLCCG+A+RP R WA+VLFITCWL FFIAEVCLLAGSV+NAYHTKY+ ++ +PPSC TLRKGVF A AAF T V+SELYYVSYS+A+D + +D G+RMG L Sbjct: 11 VFIIDLIAFALAVAAEQRRASATTTTNATSNYCVYESDVATGLGVGSLLCLLASQLLVMFASRCLCCGRALRPGRPRTWAIVLFITCWLTFFIAEVCLLAGSVKNAYHTKYRTIVSQNPPSCETLRKGVFGAAAAFIVFTGVLSELYYVSYSRADDGYLPNVRDAGIRMGAL 182 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.arboreum_cottongen_reftransV1_0008555 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008555 ID=g.arboreum_cottongen_reftransV1_0008555; Name=g.arboreum_cottongen_reftransV1_0008555; organism=Gossypium arboreum; type=contig; length=967bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|