g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008826
Unique Nameg.arboreum_cottongen_reftransV1_0008826
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0008826:1..331 .
Chr2:74909857..74910377 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q9M7J8_HORVD (HAK4 (Fragment) OS=Hordeum vulgare var. distichum GN=HAK4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.554e-27
Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = -2
Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            SP ++RF E+HK  KT LL++VL    ++I  G LTPAIS+ S++ G++VR++ L    V++++CI+LVGLF LQHRGT++VAFMFAPIVI+W L    IG+YNI+
Sbjct:   48 SPWLRRFLEKHKTVKTGLLVVVLCAASMVIGDGVLTPAISVLSSMSGLQVRATGLQERSVVLLSCIVLVGLFSLQHRGTHKVAFMFAPIVIIWLLCIGGIGLYNIV 153          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A078J4W4_BRANA (Potassium transporter OS=Brassica napus GN=BnaC01g15360D PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.620e-27
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNL S   K   ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+  ++S L++  V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW LS A +GVYNI+
Sbjct:   52 RNLPSSAFKSLIERNKRSKTALLILVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LNHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLSIATVGVYNIV 160          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0D3A5N2_BRAOL (Potassium transporter OS=Brassica oleracea var. oleracea GN=TRH1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.067e-27
Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNL S   K   ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+  ++S L++  V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW LS A +GVYNI+
Sbjct:  122 RNLPSSAFKSLIERNKRSKTALLILVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LNHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLSIATVGVYNIV 230          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: K3XEQ8_SETIT (Potassium transporter OS=Setaria italica GN=Si000375m.g PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.889e-27
Identity = 61/110 (55.45%), Postives = 85/110 (77.27%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  +P ++RF E+HKK +T LLL+VL G  ++I  G LTPAIS+ S++ G++VR++ L +  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W  S   IG+YNIL
Sbjct:  133 RNGSAPWLRRFLEKHKKVRTVLLLVVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHRSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLFSIGGIGLYNIL 242          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: M4DB58_BRARP (Potassium transporter OS=Brassica rapa subsp. pekinensis GN=Bra013718 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.567e-26
Identity = 66/110 (60.00%), Postives = 87/110 (79.09%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNL S   K   ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+  ++S L +  V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW LS A +GVYNI+
Sbjct:  122 RNLPSSAFKSLIERNKRSKTALLILVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLSIATVGVYNIV 230          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK2_ORYSJ (Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.479e-27
Identity = 58/105 (55.24%), Postives = 81/105 (77.14%), Query Frame = -2
Query:    1 PTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 315
            P ++RF E+HK A+T LLL+VL G  ++I  G LTPAIS+ S++ G+KVR++ LH   V++++CI+LVGLF LQHRGT +VAFMFAPIV++W      IG+YNI+
Sbjct:  138 PWLRRFMEKHKNARTVLLLIVLCGASMMIGDGILTPAISVLSSMSGLKVRATGLHDRSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVVIWLFCIGGIGLYNII 242          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.277e-27
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNL S   K   ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+  ++S L +  V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW L  A  GVYNI+
Sbjct:  122 RNLPSSAFKSLIERNKRSKTALLVLVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLIIATAGVYNIV 230          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK7_ORYSJ (Potassium transporter 7 OS=Oryza sativa subsp. japonica GN=HAK7 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.429e-24
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = -2
Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRS-SELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            S  +KRF E+H+K +T LLL VLFG C++I  G  TPAIS+ SAI G+K      +  G V+ IACI+LVGLF LQHRGT+RVAFMFAPIV++W LS   IG+YNI+
Sbjct:  164 SSPLKRFLEKHRKLRTCLLLFVLFGACMVIGDGVFTPAISVLSAISGLKDPGPGGIPDGWVVFIACIVLVGLFALQHRGTHRVAFMFAPIVVVWLLSIGVIGLYNII 270          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT1_ARATH (Potassium transporter 1 OS=Arabidopsis thaliana GN=POT1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.808e-21
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2
Query:    1 QSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 321
            QS  VK F E+H K++  LLL VL GTC+ I    LTP IS+ SA+ GVK++   LH   V+IIACI+LV +F +Q  GT+RVAF+FAPI   W LS ++IGVYN +
Sbjct:  138 QSAAVKSFFEKHPKSQKCLLLFVLLGTCMAIGDSVLTPTISVLSAVSGVKLKIPNLHENYVVIIACIILVAIFSVQRYGTHRVAFIFAPISTAWLLSISSIGVYNTI 244          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK3_ORYSJ (Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.251e-21
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = -2
Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            ++RF E H+K++T LL+ VLFG  L+I  G LTP +S+ S+  G++V S+ L  G V I++C +LV LF++QH GT+RVAF+FAP+VI+W L   A+GVYNI+
Sbjct:  155 LRRFLENHRKSRTFLLVTVLFGASLVIGDGVLTPPMSVLSSFSGLQVHSTALTSGEVEILSCTVLVCLFMVQHWGTHRVAFLFAPVVIVWLLLLGALGVYNIV 257          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT2_ARATH (Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.797e-20
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = -2
Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            VKR+ E+HK   TALLLLVL GTC++I  G LTPAIS+ SA+ G+++  S E H   V+ I C +LV LF LQH GT+RV F+FAPIV+ W L  + IG+YNI+
Sbjct:  139 VKRYLEKHKWLHTALLLLVLLGTCMVIGDGLLTPAISVFSAVSGLELNMSKEHHQYAVIPITCFILVCLFSLQHFGTHRVGFVFAPIVLTWLLCISGIGLYNII 242          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT4_ARATH (Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.102e-19
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = -2
Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            S   + F E+HK+ +TALLL+VLFG  ++I  G LTPA+S+ S++ G++     +  G +L++AC++LVGLF LQH GT+RVAFMFAPIVI+W +S   IG+YNI+
Sbjct:  139 SSPFRTFLEKHKRLRTALLLVVLFGAAMVIGDGVLTPALSVLSSLSGLQATEKNVTDGELLVLACVILVGLFALQHCGTHRVAFMFAPIVIIWLISIFFIGLYNII 244          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK9_ORYSJ (Probable potassium transporter 9 OS=Oryza sativa subsp. japonica GN=HAK9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.256e-19
Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = -2
Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            +K + E+HK  +TALL++V+ GTC++I  G LTPAIS+ SA+ G+++  S + H   V+ I C++LV LF LQH GT+RV F+FAPIV+ W +  + +G+YNI+
Sbjct:  137 IKEWLEKHKTLQTALLIMVMIGTCMVIGDGVLTPAISVFSAVSGLELSLSRDQHEYAVIPITCVILVFLFALQHYGTHRVGFLFAPIVLAWLICMSMLGLYNII 240          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT6_ARATH (Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.739e-19
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = -2
Query:    1 GFLTPAISIRSAIEGVKVRSSELHYGVV-LIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 222
            G LTPAIS+ SA+ GV++  S+ H+  + L  AC++L+GLF LQH GT+RV F+FAP+++LW +  +AIGVYNI 
Sbjct:  170 GVLTPAISVFSAVSGVELSMSKEHHKYIELPAACVILIGLFALQHYGTHRVGFLFAPVILLWLMCISAIGVYNIF 244          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK8_ORYSJ (Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.377e-18
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -2
Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLI-IACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            +K + E+HKK  TALL++VL GTC++I  G LTPAIS+ SA+ G++   S+ H    +I I C++L  LF LQH GT+RV F+FAPIV+ W +  +A+G+YNI+
Sbjct:  137 IKVWLEKHKKLHTALLIMVLIGTCMVIGDGVLTPAISVFSAVSGLEFSLSKDHREYAVIPITCVILAFLFALQHYGTHRVGFLFAPIVLAWLICMSALGLYNII 240          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
Q9M7J8_HORVD5.554e-2753.77HAK4 (Fragment) OS=Hordeum vulgare var. distichum ... [more]
A0A078J4W4_BRANA6.620e-2760.00Potassium transporter OS=Brassica napus GN=BnaC01g... [more]
A0A0D3A5N2_BRAOL9.067e-2760.00Potassium transporter OS=Brassica oleracea var. ol... [more]
K3XEQ8_SETIT9.889e-2755.45Potassium transporter OS=Setaria italica GN=Si0003... [more]
M4DB58_BRARP1.567e-2660.00Potassium transporter OS=Brassica rapa subsp. peki... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HAK2_ORYSJ2.479e-2755.24Probable potassium transporter 2 OS=Oryza sativa s... [more]
POT3_ARATH6.277e-2759.09Potassium transporter 3 OS=Arabidopsis thaliana GN... [more]
HAK7_ORYSJ2.429e-2458.88Potassium transporter 7 OS=Oryza sativa subsp. jap... [more]
POT1_ARATH1.808e-2153.27Potassium transporter 1 OS=Arabidopsis thaliana GN... [more]
HAK3_ORYSJ6.251e-2151.46Probable potassium transporter 3 OS=Oryza sativa s... [more]
POT2_ARATH4.797e-2055.77Potassium transporter 2 OS=Arabidopsis thaliana GN... [more]
POT4_ARATH5.102e-1951.89Potassium transporter 4 OS=Arabidopsis thaliana GN... [more]
HAK9_ORYSJ9.256e-1948.08Probable potassium transporter 9 OS=Oryza sativa s... [more]
POT6_ARATH9.739e-1953.33Potassium transporter 6 OS=Arabidopsis thaliana GN... [more]
HAK8_ORYSJ3.377e-1850.00Putative potassium transporter 8 OS=Oryza sativa s... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003855Potassium transporterPFAMPF02705K_transcoord: 7..107
e-value: 6.0E-29
score: 100.9
NoneNo IPR availablePANTHERPTHR30540OSMOTIC STRESS POTASSIUM TRANSPORTERcoord: 1..107
NoneNo IPR availablePANTHERPTHR30540:SF9POTASSIUM TRANSPORTER 4coord: 1..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..87
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 38..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..108
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availableTMHMMTMhelixcoord: 57..76
NoneNo IPR availableTMHMMTMhelixcoord: 83..105
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008826 ID=g.arboreum_cottongen_reftransV1_0008826; Name=g.arboreum_cottongen_reftransV1_0008826; organism=Gossypium arboreum; type=contig; length=331bp
AAGGATATTGTAAACACCAATAGCCGCAGTGGACAATGACCATAAAATCA
CAATGGGAGCAAACATGAAGGCCACTCTATAGGTGCCACGGTGTTGCAAA
ACAAAGAGGCCAACCAACAAAATACAGGCTATGATAAGCACCACACCATA
ATGCAGTTCGCTTGATCGAACTTTGACCCCTTCAATGGCCGAACGAATGG
AAATTGCCGGCGTGAGAAAGCCAACACAAATAAGCAGGCAAGTACCAAAC
AAAACTAGAAGCAGCAAAGCAGTTTTTGCCTTTTTATGCCTCTCGGCAAA
CCTTTTGACTGTCGGAGACTGCAGATTTCTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003855K+_transporter
Vocabulary: Molecular Function
TermDefinition
GO:0015079potassium ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport