g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q9M7J8_HORVD (HAK4 (Fragment) OS=Hordeum vulgare var. distichum GN=HAK4 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 5.554e-27 Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = -2 Query: 1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318 SP ++RF E+HK KT LL++VL ++I G LTPAIS+ S++ G++VR++ L V++++CI+LVGLF LQHRGT++VAFMFAPIVI+W L IG+YNI+ Sbjct: 48 SPWLRRFLEKHKTVKTGLLVVVLCAASMVIGDGVLTPAISVLSSMSGLQVRATGLQERSVVLLSCIVLVGLFSLQHRGTHKVAFMFAPIVIIWLLCIGGIGLYNIV 153
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A078J4W4_BRANA (Potassium transporter OS=Brassica napus GN=BnaC01g15360D PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.620e-27 Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RNL S K ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+ ++S L++ V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW LS A +GVYNI+ Sbjct: 52 RNLPSSAFKSLIERNKRSKTALLILVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LNHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLSIATVGVYNIV 160
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0D3A5N2_BRAOL (Potassium transporter OS=Brassica oleracea var. oleracea GN=TRH1 PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.067e-27 Identity = 66/110 (60.00%), Postives = 88/110 (80.00%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RNL S K ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+ ++S L++ V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW LS A +GVYNI+ Sbjct: 122 RNLPSSAFKSLIERNKRSKTALLILVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LNHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLSIATVGVYNIV 230
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: K3XEQ8_SETIT (Potassium transporter OS=Setaria italica GN=Si000375m.g PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.889e-27 Identity = 61/110 (55.45%), Postives = 85/110 (77.27%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN +P ++RF E+HKK +T LLL+VL G ++I G LTPAIS+ S++ G++VR++ L + V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W S IG+YNIL Sbjct: 133 RNGSAPWLRRFLEKHKKVRTVLLLVVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHRSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLFSIGGIGLYNIL 242
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: M4DB58_BRARP (Potassium transporter OS=Brassica rapa subsp. pekinensis GN=Bra013718 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.567e-26 Identity = 66/110 (60.00%), Postives = 87/110 (79.09%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RNL S K ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+ ++S L + V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW LS A +GVYNI+ Sbjct: 122 RNLPSSAFKSLIERNKRSKTALLILVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLSIATVGVYNIV 230
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK2_ORYSJ (Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 2.479e-27 Identity = 58/105 (55.24%), Postives = 81/105 (77.14%), Query Frame = -2 Query: 1 PTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 315 P ++RF E+HK A+T LLL+VL G ++I G LTPAIS+ S++ G+KVR++ LH V++++CI+LVGLF LQHRGT +VAFMFAPIV++W IG+YNI+ Sbjct: 138 PWLRRFMEKHKNARTVLLLIVLCGASMMIGDGILTPAISVLSSMSGLKVRATGLHDRSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVVIWLFCIGGIGLYNII 242
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 6.277e-27 Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RNL S K ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+ ++S L + V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW L A GVYNI+ Sbjct: 122 RNLPSSAFKSLIERNKRSKTALLVLVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLIIATAGVYNIV 230
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK7_ORYSJ (Potassium transporter 7 OS=Oryza sativa subsp. japonica GN=HAK7 PE=2 SV=3) HSP 1 Score: 101.679 bits (252), Expect = 2.429e-24 Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = -2 Query: 1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRS-SELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318 S +KRF E+H+K +T LLL VLFG C++I G TPAIS+ SAI G+K + G V+ IACI+LVGLF LQHRGT+RVAFMFAPIV++W LS IG+YNI+ Sbjct: 164 SSPLKRFLEKHRKLRTCLLLFVLFGACMVIGDGVFTPAISVLSAISGLKDPGPGGIPDGWVVFIACIVLVGLFALQHRGTHRVAFMFAPIVVVWLLSIGVIGLYNII 270
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT1_ARATH (Potassium transporter 1 OS=Arabidopsis thaliana GN=POT1 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.808e-21 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2 Query: 1 QSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 321 QS VK F E+H K++ LLL VL GTC+ I LTP IS+ SA+ GVK++ LH V+IIACI+LV +F +Q GT+RVAF+FAPI W LS ++IGVYN + Sbjct: 138 QSAAVKSFFEKHPKSQKCLLLFVLLGTCMAIGDSVLTPTISVLSAVSGVKLKIPNLHENYVVIIACIILVAIFSVQRYGTHRVAFIFAPISTAWLLSISSIGVYNTI 244
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK3_ORYSJ (Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.251e-21 Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = -2 Query: 1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309 ++RF E H+K++T LL+ VLFG L+I G LTP +S+ S+ G++V S+ L G V I++C +LV LF++QH GT+RVAF+FAP+VI+W L A+GVYNI+ Sbjct: 155 LRRFLENHRKSRTFLLVTVLFGASLVIGDGVLTPPMSVLSSFSGLQVHSTALTSGEVEILSCTVLVCLFMVQHWGTHRVAFLFAPVVIVWLLLLGALGVYNIV 257
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT2_ARATH (Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 4.797e-20 Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = -2 Query: 1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309 VKR+ E+HK TALLLLVL GTC++I G LTPAIS+ SA+ G+++ S E H V+ I C +LV LF LQH GT+RV F+FAPIV+ W L + IG+YNI+ Sbjct: 139 VKRYLEKHKWLHTALLLLVLLGTCMVIGDGLLTPAISVFSAVSGLELNMSKEHHQYAVIPITCFILVCLFSLQHFGTHRVGFVFAPIVLTWLLCISGIGLYNII 242
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT4_ARATH (Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 5.102e-19 Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = -2 Query: 1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318 S + F E+HK+ +TALLL+VLFG ++I G LTPA+S+ S++ G++ + G +L++AC++LVGLF LQH GT+RVAFMFAPIVI+W +S IG+YNI+ Sbjct: 139 SSPFRTFLEKHKRLRTALLLVVLFGAAMVIGDGVLTPALSVLSSLSGLQATEKNVTDGELLVLACVILVGLFALQHCGTHRVAFMFAPIVIIWLISIFFIGLYNII 244
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK9_ORYSJ (Probable potassium transporter 9 OS=Oryza sativa subsp. japonica GN=HAK9 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.256e-19 Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = -2 Query: 1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309 +K + E+HK +TALL++V+ GTC++I G LTPAIS+ SA+ G+++ S + H V+ I C++LV LF LQH GT+RV F+FAPIV+ W + + +G+YNI+ Sbjct: 137 IKEWLEKHKTLQTALLIMVMIGTCMVIGDGVLTPAISVFSAVSGLELSLSRDQHEYAVIPITCVILVFLFALQHYGTHRVGFLFAPIVLAWLICMSMLGLYNII 240
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT6_ARATH (Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.739e-19 Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = -2 Query: 1 GFLTPAISIRSAIEGVKVRSSELHYGVV-LIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 222 G LTPAIS+ SA+ GV++ S+ H+ + L AC++L+GLF LQH GT+RV F+FAP+++LW + +AIGVYNI Sbjct: 170 GVLTPAISVFSAVSGVELSMSKEHHKYIELPAACVILIGLFALQHYGTHRVGFLFAPVILLWLMCISAIGVYNIF 244
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK8_ORYSJ (Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 3.377e-18 Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -2 Query: 1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLI-IACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309 +K + E+HKK TALL++VL GTC++I G LTPAIS+ SA+ G++ S+ H +I I C++L LF LQH GT+RV F+FAPIV+ W + +A+G+YNI+ Sbjct: 137 IKVWLEKHKKLHTALLIMVLIGTCMVIGDGVLTPAISVFSAVSGLEFSLSKDHREYAVIPITCVILAFLFALQHYGTHRVGFLFAPIVLAWLICMSALGLYNII 240 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008826 ID=g.arboreum_cottongen_reftransV1_0008826; Name=g.arboreum_cottongen_reftransV1_0008826; organism=Gossypium arboreum; type=contig; length=331bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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