g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008826
Unique Nameg.arboreum_cottongen_reftransV1_0008826
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr2chromosomeg.arboreum_cottongen_reftransV1_0008826:1..331 .
Chr2:74909857..74910377 +
n/a
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: B9GX37_POPTR (Potassium transporter OS=Populus trichocarpa GN=POPTR_0003s13370g PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.852e-28
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K+F E HKK KTALL+LVLFG  + I +   TPAISI S++EG++VR+  LH+G+++IIA  LL+GLFVLQH G +RVAF+FAPIVILW LS A +G+YNI+
Sbjct:  122 RNVVSSRFKKFVEGHKKMKTALLVLVLFGAAVFITIAIFTPAISILSSVEGLQVRAKNLHHGMLVIIALFLLIGLFVLQHYGMHRVAFIFAPIVILWLLSIAFVGIYNII 231          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: K7V1X3_MAIZE (Potassium transporter OS=Zea mays GN=HAK2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.817e-28
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP  +RF E+HKK +T  LL+VL G  ++I  G LTPAIS+ S++ G+ VR++ LH+  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS   IG+YNIL
Sbjct:  133 RNGSSPWSRRFLEKHKKMRTLFLLIVLCGASMVIGDGVLTPAISVLSSMSGLHVRATGLHHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIL 242          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: C5XH54_SORBI (Potassium transporter OS=Sorghum bicolor GN=Sb03g045180 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.985e-28
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP +KRF E+HKK +T LLL+VL G  ++I  G LTPAIS+ S++ G++VR++ L +  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS   IG+YNI 
Sbjct:  133 RNGSSPWLKRFLEKHKKMRTVLLLIVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIF 242          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q94IL7_9ROSI (Potassium transporter OS=Populus tremula x Populus tremuloides GN=kup1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.884e-27
Identity = 64/110 (58.18%), Postives = 86/110 (78.18%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ +   K+F E HKK KTALL+LVLFG  + I +   TPAISI S++EG++VR+  LH+G+++IIA  LL+GLFVLQH G +RVAF+F+PIVILW LS A +G+YNI+
Sbjct:  122 RNVVTSRFKKFVEGHKKMKTALLVLVLFGAAVFITIAIFTPAISILSSVEGLQVRAKNLHHGMLVIIALFLLIGLFVLQHYGMHRVAFIFSPIVILWLLSIAFVGIYNII 231          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q9FSI4_HORVU (Potassium transporter (Fragment) OS=Hordeum vulgare GN=hak4 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.017e-27
Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = -2
Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            SP ++RF E+HK  KT LL++VL    ++I  G LTPAIS+ S++ G++VR++ L    V++++CI+LVGLF LQHRGT++VAFMFAPIVI+W L    IG+YNI+
Sbjct:   32 SPWLRRFLEKHKTVKTGLLVVVLCAASMVIGDGVLTPAISVLSSMSGLQVRATGLQERSVVLLSCIVLVGLFSLQHRGTHKVAFMFAPIVIIWLLCIGGIGLYNIV 137          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A067GLR3_CITSI (Potassium transporter OS=Citrus sinensis GN=CISIN_1g004065mg PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.325e-27
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K F ERHKK KT LLLLVL G  L+  +G LTPAIS+ S+I+G++V+    H  +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST  IG+YN++
Sbjct:  123 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 232          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: V4VJ57_9ROSI (Potassium transporter OS=Citrus clementina GN=CICLE_v10018953mg PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.357e-27
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K F ERHKK KT LLLLVL G  L+  +G LTPAIS+ S+I+G++V+    H  +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST  IG+YN++
Sbjct:  122 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 231          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A067GM05_CITSI (Potassium transporter OS=Citrus sinensis GN=CISIN_1g004065mg PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.357e-27
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K F ERHKK KT LLLLVL G  L+  +G LTPAIS+ S+I+G++V+    H  +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST  IG+YN++
Sbjct:  122 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 231          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A068F7G5_ELAGV (Potassium transporter OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.718e-27
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ +  +KRF E+HK+ +T LLL+VLFG C++I  G LTPAIS+ S+I G++VR+ +LH   V+I+ACI+LVGLF LQHRGT+RVAF+FAP+VI+W L    IG+YN++
Sbjct:  134 RNMITSPLKRFLEKHKRLRTCLLLIVLFGACMVIGDGVLTPAISVLSSISGLQVRAKKLHDAEVIIMACIVLVGLFALQHRGTHRVAFLFAPVVIIWLLCIGVIGLYNVI 243          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0C5AVN0_9POAL (Potassium transporter (Fragment) OS=Saccharum hybrid cultivar ROC22 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.903e-27
Identity = 62/110 (56.36%), Postives = 85/110 (77.27%), Query Frame = -2
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP ++RF E+HKK +T LLL+VL G  ++I  G LTPAIS+ S++ G++VR++ L +  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W L    IG+YNIL
Sbjct:   44 RNGSSPWLRRFLEKHKKMRTVLLLIVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLFIGGIGLYNIL 153          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK26_ORYSJ (Potassium transporter 26 OS=Oryza sativa subsp. japonica GN=HAK26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.898e-14
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = -2
Query:    1 RFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 303
            +F E+  K +  +  +VL GTC+++  G LTPAIS+ SA++G++ RSS +    V++++ I+L  LF  Q  GT +V+F F+PI+ILW    A IG+YNI+
Sbjct:  189 KFLEQSTKWQAVITYIVLAGTCMVLGDGALTPAISVLSAVQGIQSRSSSITQAHVVLLSVIILFILFFFQKHGTSKVSFTFSPIMILWFTFVAFIGLYNII 289          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK4_ORYSJ (Probable potassium transporter 4 OS=Oryza sativa subsp. japonica GN=HAK4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.836e-13
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = -2
Query:    4 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNI 309
            ++RF E    A+  LLL  + G C+LI  G LTPAIS+ SAI+G++     +    V  ++  +LVGLF+LQ  GT +V+FMF+PI+  W+ +T  IGVY+I
Sbjct:  140 LRRFIESSIIARRLLLLTAILGMCMLIGDGILTPAISVLSAIDGLRGPFPSVSKPAVEGLSAAILVGLFLLQKYGTSKVSFMFSPIMAAWTFATPVIGVYSI 241          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT10_ARATH (Potassium transporter 10 OS=Arabidopsis thaliana GN=POT10 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.937e-12
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = -2
Query:    4 KRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNI 306
            KR+ E     K ALL+LVL GTC++I  G LTPAIS+ SA  G++V    ++ G+V+++A ++LV LF +QH GT RV ++FAPIV LW L  A+IG++NI
Sbjct:  171 KRWLENGTSRKNALLILVLVGTCMVIGDGILTPAISVLSAAGGLRVNLPHINNGIVVVVAVVILVSLFSVQHYGTDRVGWLFAPIVFLWFLFIASIGMFNI 271          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPA (Probable potassium transport system protein kup 1 OS=Legionella pneumophila (strain Paris) GN=kup1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.453e-12
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = -2
Query:    1 GFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 222
            G LTPAIS+ SA+EG+   S +L Y  VL IA ++LV LF LQ +GT R+ ++F P++++W ++ A +G+  IL
Sbjct:  111 GMLTPAISVVSAVEGLGTLSDKL-YPYVLPIASLILVLLFSLQAKGTARIGYLFGPLILIWFITIAILGILQIL 183          
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK17_ORYSJ (Probable potassium transporter 17 OS=Oryza sativa subsp. japonica GN=HAK17 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 2.465e-12
Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = -2
Query:    1 RFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 303
            +F E+   A+  LL + + G C+LI  G LTPAIS+ SAI+G++     +   VV  ++  +L+GLF+LQ  GT +V+F+F+PI+  W+ +T  IG+Y+I+
Sbjct:  147 KFFEQSITARRVLLFVAVLGMCMLIGDGILTPAISVLSAIDGIRGPFPTVSKPVVEALSAAILIGLFLLQKYGTSKVSFLFSPIMAAWTFTTPIIGLYSIV 247          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
B9GX37_POPTR2.852e-2860.00Potassium transporter OS=Populus trichocarpa GN=PO... [more]
K7V1X3_MAIZE3.817e-2857.27Potassium transporter OS=Zea mays GN=HAK2 PE=2 SV=... [more]
C5XH54_SORBI5.985e-2857.27Potassium transporter OS=Sorghum bicolor GN=Sb03g0... [more]
Q94IL7_9ROSI1.884e-2758.18Potassium transporter OS=Populus tremula x Populus... [more]
Q9FSI4_HORVU3.017e-2753.77Potassium transporter (Fragment) OS=Hordeum vulgar... [more]
A0A067GLR3_CITSI4.325e-2757.27Potassium transporter OS=Citrus sinensis GN=CISIN_... [more]
V4VJ57_9ROSI4.357e-2757.27Potassium transporter OS=Citrus clementina GN=CICL... [more]
A0A067GM05_CITSI4.357e-2757.27Potassium transporter OS=Citrus sinensis GN=CISIN_... [more]
A0A068F7G5_ELAGV4.718e-2757.27Potassium transporter OS=Elaeis guineensis var. te... [more]
A0A0C5AVN0_9POAL4.903e-2756.36Potassium transporter (Fragment) OS=Saccharum hybr... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HAK26_ORYSJ6.898e-1442.57Potassium transporter 26 OS=Oryza sativa subsp. ja... [more]
HAK4_ORYSJ9.836e-1344.12Probable potassium transporter 4 OS=Oryza sativa s... [more]
POT10_ARATH1.937e-1250.50Potassium transporter 10 OS=Arabidopsis thaliana G... [more]
KUP1_LEGPA2.453e-1245.95Probable potassium transport system protein kup 1 ... [more]
HAK17_ORYSJ2.465e-1240.59Probable potassium transporter 17 OS=Oryza sativa ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003855Potassium transporterPFAMPF02705K_transcoord: 7..107
e-value: 6.0E-29
score: 100.9
NoneNo IPR availablePANTHERPTHR30540OSMOTIC STRESS POTASSIUM TRANSPORTERcoord: 1..107
NoneNo IPR availablePANTHERPTHR30540:SF9POTASSIUM TRANSPORTER 4coord: 1..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..87
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 38..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..108
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availableTMHMMTMhelixcoord: 57..76
NoneNo IPR availableTMHMMTMhelixcoord: 83..105
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008826 ID=g.arboreum_cottongen_reftransV1_0008826; Name=g.arboreum_cottongen_reftransV1_0008826; organism=Gossypium arboreum; type=contig; length=331bp
AAGGATATTGTAAACACCAATAGCCGCAGTGGACAATGACCATAAAATCA
CAATGGGAGCAAACATGAAGGCCACTCTATAGGTGCCACGGTGTTGCAAA
ACAAAGAGGCCAACCAACAAAATACAGGCTATGATAAGCACCACACCATA
ATGCAGTTCGCTTGATCGAACTTTGACCCCTTCAATGGCCGAACGAATGG
AAATTGCCGGCGTGAGAAAGCCAACACAAATAAGCAGGCAAGTACCAAAC
AAAACTAGAAGCAGCAAAGCAGTTTTTGCCTTTTTATGCCTCTCGGCAAA
CCTTTTGACTGTCGGAGACTGCAGATTTCTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003855K+_transporter
Vocabulary: Molecular Function
TermDefinition
GO:0015079potassium ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport