g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: B9GX37_POPTR (Potassium transporter OS=Populus trichocarpa GN=POPTR_0003s13370g PE=3 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 2.852e-28 Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN+ S K+F E HKK KTALL+LVLFG + I + TPAISI S++EG++VR+ LH+G+++IIA LL+GLFVLQH G +RVAF+FAPIVILW LS A +G+YNI+ Sbjct: 122 RNVVSSRFKKFVEGHKKMKTALLVLVLFGAAVFITIAIFTPAISILSSVEGLQVRAKNLHHGMLVIIALFLLIGLFVLQHYGMHRVAFIFAPIVILWLLSIAFVGIYNII 231
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: K7V1X3_MAIZE (Potassium transporter OS=Zea mays GN=HAK2 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.817e-28 Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN SP +RF E+HKK +T LL+VL G ++I G LTPAIS+ S++ G+ VR++ LH+ V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS IG+YNIL Sbjct: 133 RNGSSPWSRRFLEKHKKMRTLFLLIVLCGASMVIGDGVLTPAISVLSSMSGLHVRATGLHHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIL 242
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: C5XH54_SORBI (Potassium transporter OS=Sorghum bicolor GN=Sb03g045180 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 5.985e-28 Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN SP +KRF E+HKK +T LLL+VL G ++I G LTPAIS+ S++ G++VR++ L + V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS IG+YNI Sbjct: 133 RNGSSPWLKRFLEKHKKMRTVLLLIVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIF 242
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q94IL7_9ROSI (Potassium transporter OS=Populus tremula x Populus tremuloides GN=kup1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.884e-27 Identity = 64/110 (58.18%), Postives = 86/110 (78.18%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN+ + K+F E HKK KTALL+LVLFG + I + TPAISI S++EG++VR+ LH+G+++IIA LL+GLFVLQH G +RVAF+F+PIVILW LS A +G+YNI+ Sbjct: 122 RNVVTSRFKKFVEGHKKMKTALLVLVLFGAAVFITIAIFTPAISILSSVEGLQVRAKNLHHGMLVIIALFLLIGLFVLQHYGMHRVAFIFSPIVILWLLSIAFVGIYNII 231
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q9FSI4_HORVU (Potassium transporter (Fragment) OS=Hordeum vulgare GN=hak4 PE=4 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.017e-27 Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = -2 Query: 1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318 SP ++RF E+HK KT LL++VL ++I G LTPAIS+ S++ G++VR++ L V++++CI+LVGLF LQHRGT++VAFMFAPIVI+W L IG+YNI+ Sbjct: 32 SPWLRRFLEKHKTVKTGLLVVVLCAASMVIGDGVLTPAISVLSSMSGLQVRATGLQERSVVLLSCIVLVGLFSLQHRGTHKVAFMFAPIVIIWLLCIGGIGLYNIV 137
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A067GLR3_CITSI (Potassium transporter OS=Citrus sinensis GN=CISIN_1g004065mg PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.325e-27 Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN+ S K F ERHKK KT LLLLVL G L+ +G LTPAIS+ S+I+G++V+ H +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST IG+YN++ Sbjct: 123 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 232
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: V4VJ57_9ROSI (Potassium transporter OS=Citrus clementina GN=CICLE_v10018953mg PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.357e-27 Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN+ S K F ERHKK KT LLLLVL G L+ +G LTPAIS+ S+I+G++V+ H +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST IG+YN++ Sbjct: 122 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 231
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A067GM05_CITSI (Potassium transporter OS=Citrus sinensis GN=CISIN_1g004065mg PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.357e-27 Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN+ S K F ERHKK KT LLLLVL G L+ +G LTPAIS+ S+I+G++V+ H +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST IG+YN++ Sbjct: 122 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 231
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A068F7G5_ELAGV (Potassium transporter OS=Elaeis guineensis var. tenera PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.718e-27 Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN+ + +KRF E+HK+ +T LLL+VLFG C++I G LTPAIS+ S+I G++VR+ +LH V+I+ACI+LVGLF LQHRGT+RVAF+FAP+VI+W L IG+YN++ Sbjct: 134 RNMITSPLKRFLEKHKRLRTCLLLIVLFGACMVIGDGVLTPAISVLSSISGLQVRAKKLHDAEVIIMACIVLVGLFALQHRGTHRVAFLFAPVVIIWLLCIGVIGLYNVI 243
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0C5AVN0_9POAL (Potassium transporter (Fragment) OS=Saccharum hybrid cultivar ROC22 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.903e-27 Identity = 62/110 (56.36%), Postives = 85/110 (77.27%), Query Frame = -2 Query: 1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330 RN SP ++RF E+HKK +T LLL+VL G ++I G LTPAIS+ S++ G++VR++ L + V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W L IG+YNIL Sbjct: 44 RNGSSPWLRRFLEKHKKMRTVLLLIVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLFIGGIGLYNIL 153
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK26_ORYSJ (Potassium transporter 26 OS=Oryza sativa subsp. japonica GN=HAK26 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.898e-14 Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = -2 Query: 1 RFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 303 +F E+ K + + +VL GTC+++ G LTPAIS+ SA++G++ RSS + V++++ I+L LF Q GT +V+F F+PI+ILW A IG+YNI+ Sbjct: 189 KFLEQSTKWQAVITYIVLAGTCMVLGDGALTPAISVLSAVQGIQSRSSSITQAHVVLLSVIILFILFFFQKHGTSKVSFTFSPIMILWFTFVAFIGLYNII 289
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK4_ORYSJ (Probable potassium transporter 4 OS=Oryza sativa subsp. japonica GN=HAK4 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 9.836e-13 Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = -2 Query: 4 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNI 309 ++RF E A+ LLL + G C+LI G LTPAIS+ SAI+G++ + V ++ +LVGLF+LQ GT +V+FMF+PI+ W+ +T IGVY+I Sbjct: 140 LRRFIESSIIARRLLLLTAILGMCMLIGDGILTPAISVLSAIDGLRGPFPSVSKPAVEGLSAAILVGLFLLQKYGTSKVSFMFSPIMAAWTFATPVIGVYSI 241
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT10_ARATH (Potassium transporter 10 OS=Arabidopsis thaliana GN=POT10 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 1.937e-12 Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = -2 Query: 4 KRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNI 306 KR+ E K ALL+LVL GTC++I G LTPAIS+ SA G++V ++ G+V+++A ++LV LF +QH GT RV ++FAPIV LW L A+IG++NI Sbjct: 171 KRWLENGTSRKNALLILVLVGTCMVIGDGILTPAISVLSAAGGLRVNLPHINNGIVVVVAVVILVSLFSVQHYGTDRVGWLFAPIVFLWFLFIASIGMFNI 271
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPA (Probable potassium transport system protein kup 1 OS=Legionella pneumophila (strain Paris) GN=kup1 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.453e-12 Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = -2 Query: 1 GFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 222 G LTPAIS+ SA+EG+ S +L Y VL IA ++LV LF LQ +GT R+ ++F P++++W ++ A +G+ IL Sbjct: 111 GMLTPAISVVSAVEGLGTLSDKL-YPYVLPIASLILVLLFSLQAKGTARIGYLFGPLILIWFITIAILGILQIL 183
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK17_ORYSJ (Probable potassium transporter 17 OS=Oryza sativa subsp. japonica GN=HAK17 PE=2 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 2.465e-12 Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = -2 Query: 1 RFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 303 +F E+ A+ LL + + G C+LI G LTPAIS+ SAI+G++ + VV ++ +L+GLF+LQ GT +V+F+F+PI+ W+ +T IG+Y+I+ Sbjct: 147 KFFEQSITARRVLLFVAVLGMCMLIGDGILTPAISVLSAIDGIRGPFPTVSKPVVEALSAAILIGLFLLQKYGTSKVSFLFSPIMAAWTFTTPIIGLYSIV 247 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008826 ID=g.arboreum_cottongen_reftransV1_0008826; Name=g.arboreum_cottongen_reftransV1_0008826; organism=Gossypium arboreum; type=contig; length=331bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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