g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0008826
Unique Name	g.arboreum_cottongen_reftransV1_0008826
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr2	chromosome	g.arboreum_cottongen_reftransV1_0008826:1..331 . Chr2:74909857..74910377 +

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: B9GX37_POPTR (Potassium transporter OS=Populus trichocarpa GN=POPTR_0003s13370g PE=3 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.852e-28
Identity = 66/110 (60.00%), Postives = 86/110 (78.18%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K+F E HKK KTALL+LVLFG  + I +   TPAISI S++EG++VR+  LH+G+++IIA  LL+GLFVLQH G +RVAF+FAPIVILW LS A +G+YNI+
Sbjct:  122 RNVVSSRFKKFVEGHKKMKTALLVLVLFGAAVFITIAIFTPAISILSSVEGLQVRAKNLHHGMLVIIALFLLIGLFVLQHYGMHRVAFIFAPIVILWLLSIAFVGIYNII 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: K7V1X3_MAIZE (Potassium transporter OS=Zea mays GN=HAK2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.817e-28
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP  +RF E+HKK +T  LL+VL G  ++I  G LTPAIS+ S++ G+ VR++ LH+  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS   IG+YNIL
Sbjct:  133 RNGSSPWSRRFLEKHKKMRTLFLLIVLCGASMVIGDGVLTPAISVLSSMSGLHVRATGLHHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIL 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: C5XH54_SORBI (Potassium transporter OS=Sorghum bicolor GN=Sb03g045180 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.985e-28
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP +KRF E+HKK +T LLL+VL G  ++I  G LTPAIS+ S++ G++VR++ L +  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS   IG+YNI 
Sbjct:  133 RNGSSPWLKRFLEKHKKMRTVLLLIVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIF 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q94IL7_9ROSI (Potassium transporter OS=Populus tremula x Populus tremuloides GN=kup1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.884e-27
Identity = 64/110 (58.18%), Postives = 86/110 (78.18%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ +   K+F E HKK KTALL+LVLFG  + I +   TPAISI S++EG++VR+  LH+G+++IIA  LL+GLFVLQH G +RVAF+F+PIVILW LS A +G+YNI+
Sbjct:  122 RNVVTSRFKKFVEGHKKMKTALLVLVLFGAAVFITIAIFTPAISILSSVEGLQVRAKNLHHGMLVIIALFLLIGLFVLQHYGMHRVAFIFSPIVILWLLSIAFVGIYNII 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: Q9FSI4_HORVU (Potassium transporter (Fragment) OS=Hordeum vulgare GN=hak4 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.017e-27
Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = -2

Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            SP ++RF E+HK  KT LL++VL    ++I  G LTPAIS+ S++ G++VR++ L    V++++CI+LVGLF LQHRGT++VAFMFAPIVI+W L    IG+YNI+
Sbjct:   32 SPWLRRFLEKHKTVKTGLLVVVLCAASMVIGDGVLTPAISVLSSMSGLQVRATGLQERSVVLLSCIVLVGLFSLQHRGTHKVAFMFAPIVIIWLLCIGGIGLYNIV 137

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A067GLR3_CITSI (Potassium transporter OS=Citrus sinensis GN=CISIN_1g004065mg PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.325e-27
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K F ERHKK KT LLLLVL G  L+  +G LTPAIS+ S+I+G++V+    H  +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST  IG+YN++
Sbjct:  123 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 232

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: V4VJ57_9ROSI (Potassium transporter OS=Citrus clementina GN=CICLE_v10018953mg PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.357e-27
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K F ERHKK KT LLLLVL G  L+  +G LTPAIS+ S+I+G++V+    H  +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST  IG+YN++
Sbjct:  122 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A067GM05_CITSI (Potassium transporter OS=Citrus sinensis GN=CISIN_1g004065mg PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.357e-27
Identity = 63/110 (57.27%), Postives = 84/110 (76.36%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ S   K F ERHKK KT LLLLVL G  L+  +G LTPAIS+ S+I+G++V+    H  +V+ +AC++L+G FVLQ+RGT+RVAFMFAP+VILW LST  IG+YN++
Sbjct:  122 RNMTSSPFKVFMERHKKTKTGLLLLVLLGAALVFSIGVLTPAISVLSSIDGLQVQLQNRHTRMVVFLACLVLIGHFVLQYRGTHRVAFMFAPVVILWLLSTTGIGIYNVI 231

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A068F7G5_ELAGV (Potassium transporter OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.718e-27
Identity = 63/110 (57.27%), Postives = 88/110 (80.00%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+ +  +KRF E+HK+ +T LLL+VLFG C++I  G LTPAIS+ S+I G++VR+ +LH   V+I+ACI+LVGLF LQHRGT+RVAF+FAP+VI+W L    IG+YN++
Sbjct:  134 RNMITSPLKRFLEKHKRLRTCLLLIVLFGACMVIGDGVLTPAISVLSSISGLQVRAKKLHDAEVIIMACIVLVGLFALQHRGTHRVAFLFAPVVIIWLLCIGVIGLYNVI 243

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0C5AVN0_9POAL (Potassium transporter (Fragment) OS=Saccharum hybrid cultivar ROC22 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.903e-27
Identity = 62/110 (56.36%), Postives = 85/110 (77.27%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP ++RF E+HKK +T LLL+VL G  ++I  G LTPAIS+ S++ G++VR++ L +  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W L    IG+YNIL
Sbjct:   44 RNGSSPWLRRFLEKHKKMRTVLLLIVLCGASMVIGDGVLTPAISVLSSMSGLQVRATGLEHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLFIGGIGLYNIL 153

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK2_ORYSJ (Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.479e-27
Identity = 58/105 (55.24%), Postives = 81/105 (77.14%), Query Frame = -2

Query:    1 PTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 315
            P ++RF E+HK A+T LLL+VL G  ++I  G LTPAIS+ S++ G+KVR++ LH   V++++CI+LVGLF LQHRGT +VAFMFAPIV++W      IG+YNI+
Sbjct:  138 PWLRRFMEKHKNARTVLLLIVLCGASMMIGDGILTPAISVLSSMSGLKVRATGLHDRSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVVIWLFCIGGIGLYNII 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.277e-27
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = -2

Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNL S   K   ER+K++KTALL+LVL GT ++I +G LTPAIS+ S+I+G+  ++S L +  V++IAC LLVGLFVLQHRGT +VAF+FAPI+ILW L  A  GVYNI+
Sbjct:  122 RNLPSSAFKSLIERNKRSKTALLVLVLVGTSMVITIGVLTPAISVSSSIDGLVAKTS-LKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLIIATAGVYNIV 230

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK7_ORYSJ (Potassium transporter 7 OS=Oryza sativa subsp. japonica GN=HAK7 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 2.429e-24
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = -2

Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRS-SELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            S  +KRF E+H+K +T LLL VLFG C++I  G  TPAIS+ SAI G+K      +  G V+ IACI+LVGLF LQHRGT+RVAFMFAPIV++W LS   IG+YNI+
Sbjct:  164 SSPLKRFLEKHRKLRTCLLLFVLFGACMVIGDGVFTPAISVLSAISGLKDPGPGGIPDGWVVFIACIVLVGLFALQHRGTHRVAFMFAPIVVVWLLSIGVIGLYNII 270

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT1_ARATH (Potassium transporter 1 OS=Arabidopsis thaliana GN=POT1 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.808e-21
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = -2

Query:    1 QSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 321
            QS  VK F E+H K++  LLL VL GTC+ I    LTP IS+ SA+ GVK++   LH   V+IIACI+LV +F +Q  GT+RVAF+FAPI   W LS ++IGVYN +
Sbjct:  138 QSAAVKSFFEKHPKSQKCLLLFVLLGTCMAIGDSVLTPTISVLSAVSGVKLKIPNLHENYVVIIACIILVAIFSVQRYGTHRVAFIFAPISTAWLLSISSIGVYNTI 244

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK3_ORYSJ (Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.251e-21
Identity = 53/103 (51.46%), Postives = 77/103 (74.76%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            ++RF E H+K++T LL+ VLFG  L+I  G LTP +S+ S+  G++V S+ L  G V I++C +LV LF++QH GT+RVAF+FAP+VI+W L   A+GVYNI+
Sbjct:  155 LRRFLENHRKSRTFLLVTVLFGASLVIGDGVLTPPMSVLSSFSGLQVHSTALTSGEVEILSCTVLVCLFMVQHWGTHRVAFLFAPVVIVWLLLLGALGVYNIV 257

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT2_ARATH (Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.797e-20
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            VKR+ E+HK   TALLLLVL GTC++I  G LTPAIS+ SA+ G+++  S E H   V+ I C +LV LF LQH GT+RV F+FAPIV+ W L  + IG+YNI+
Sbjct:  139 VKRYLEKHKWLHTALLLLVLLGTCMVIGDGLLTPAISVFSAVSGLELNMSKEHHQYAVIPITCFILVCLFSLQHFGTHRVGFVFAPIVLTWLLCISGIGLYNII 242

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT4_ARATH (Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.102e-19
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = -2

Query:    1 SPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 318
            S   + F E+HK+ +TALLL+VLFG  ++I  G LTPA+S+ S++ G++     +  G +L++AC++LVGLF LQH GT+RVAFMFAPIVI+W +S   IG+YNI+
Sbjct:  139 SSPFRTFLEKHKRLRTALLLVVLFGAAMVIGDGVLTPALSVLSSLSGLQATEKNVTDGELLVLACVILVGLFALQHCGTHRVAFMFAPIVIIWLISIFFIGLYNII 244

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK9_ORYSJ (Probable potassium transporter 9 OS=Oryza sativa subsp. japonica GN=HAK9 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.256e-19
Identity = 50/104 (48.08%), Postives = 76/104 (73.08%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVR-SSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            +K + E+HK  +TALL++V+ GTC++I  G LTPAIS+ SA+ G+++  S + H   V+ I C++LV LF LQH GT+RV F+FAPIV+ W +  + +G+YNI+
Sbjct:  137 IKEWLEKHKTLQTALLIMVMIGTCMVIGDGVLTPAISVFSAVSGLELSLSRDQHEYAVIPITCVILVFLFALQHYGTHRVGFLFAPIVLAWLICMSMLGLYNII 240

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT6_ARATH (Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.739e-19
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = -2

Query:    1 GFLTPAISIRSAIEGVKVRSSELHYGVV-LIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 222
            G LTPAIS+ SA+ GV++  S+ H+  + L  AC++L+GLF LQH GT+RV F+FAP+++LW +  +AIGVYNI 
Sbjct:  170 GVLTPAISVFSAVSGVELSMSKEHHKYIELPAACVILIGLFALQHYGTHRVGFLFAPVILLWLMCISAIGVYNIF 244

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK8_ORYSJ (Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.377e-18
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = -2

Query:    1 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLI-IACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 309
            +K + E+HKK  TALL++VL GTC++I  G LTPAIS+ SA+ G++   S+ H    +I I C++L  LF LQH GT+RV F+FAPIV+ W +  +A+G+YNI+
Sbjct:  137 IKVWLEKHKKLHTALLIMVLIGTCMVIGDGVLTPAISVFSAVSGLEFSLSKDHREYAVIPITCVILAFLFALQHYGTHRVGFLFAPIVLAWLICMSALGLYNII 240

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
B9GX37_POPTR	2.852e-28	60.00	Potassium transporter OS=Populus trichocarpa GN=PO...	[more]
K7V1X3_MAIZE	3.817e-28	57.27	Potassium transporter OS=Zea mays GN=HAK2 PE=2 SV=...	[more]
C5XH54_SORBI	5.985e-28	57.27	Potassium transporter OS=Sorghum bicolor GN=Sb03g0...	[more]
Q94IL7_9ROSI	1.884e-27	58.18	Potassium transporter OS=Populus tremula x Populus...	[more]
Q9FSI4_HORVU	3.017e-27	53.77	Potassium transporter (Fragment) OS=Hordeum vulgar...	[more]
A0A067GLR3_CITSI	4.325e-27	57.27	Potassium transporter OS=Citrus sinensis GN=CISIN_...	[more]
V4VJ57_9ROSI	4.357e-27	57.27	Potassium transporter OS=Citrus clementina GN=CICL...	[more]
A0A067GM05_CITSI	4.357e-27	57.27	Potassium transporter OS=Citrus sinensis GN=CISIN_...	[more]
A0A068F7G5_ELAGV	4.718e-27	57.27	Potassium transporter OS=Elaeis guineensis var. te...	[more]
A0A0C5AVN0_9POAL	4.903e-27	56.36	Potassium transporter (Fragment) OS=Saccharum hybr...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
HAK2_ORYSJ	2.479e-27	55.24	Probable potassium transporter 2 OS=Oryza sativa s...	[more]
POT3_ARATH	6.277e-27	59.09	Potassium transporter 3 OS=Arabidopsis thaliana GN...	[more]
HAK7_ORYSJ	2.429e-24	58.88	Potassium transporter 7 OS=Oryza sativa subsp. jap...	[more]
POT1_ARATH	1.808e-21	53.27	Potassium transporter 1 OS=Arabidopsis thaliana GN...	[more]
HAK3_ORYSJ	6.251e-21	51.46	Probable potassium transporter 3 OS=Oryza sativa s...	[more]
POT2_ARATH	4.797e-20	55.77	Potassium transporter 2 OS=Arabidopsis thaliana GN...	[more]
POT4_ARATH	5.102e-19	51.89	Potassium transporter 4 OS=Arabidopsis thaliana GN...	[more]
HAK9_ORYSJ	9.256e-19	48.08	Probable potassium transporter 9 OS=Oryza sativa s...	[more]
POT6_ARATH	9.739e-19	53.33	Potassium transporter 6 OS=Arabidopsis thaliana GN...	[more]
HAK8_ORYSJ	3.377e-18	50.00	Putative potassium transporter 8 OS=Oryza sativa s...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003855	Potassium transporter	PFAM	PF02705	K_trans	coord: 7..107 e-value: 6.0E-29 score: 100.9
None	No IPR available	PANTHER	PTHR30540	OSMOTIC STRESS POTASSIUM TRANSPORTER	coord: 1..107
None	No IPR available	PANTHER	PTHR30540:SF9	POTASSIUM TRANSPORTER 4	coord: 1..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 88..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 58..76
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 77..87
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 43..57
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 38..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 108..108
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 19..37
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..18
None	No IPR available	TMHMM	TMhelix		coord: 57..76
None	No IPR available	TMHMM	TMhelix		coord: 83..105
None	No IPR available	TMHMM	TMhelix		coord: 20..42

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0008826 ID=g.arboreum_cottongen_reftransV1_0008826; Name=g.arboreum_cottongen_reftransV1_0008826; organism=Gossypium arboreum; type=contig; length=331bp
AAGGATATTGTAAACACCAATAGCCGCAGTGGACAATGACCATAAAATCA
CAATGGGAGCAAACATGAAGGCCACTCTATAGGTGCCACGGTGTTGCAAA
ACAAAGAGGCCAACCAACAAAATACAGGCTATGATAAGCACCACACCATA
ATGCAGTTCGCTTGATCGAACTTTGACCCCTTCAATGGCCGAACGAATGG
AAATTGCCGGCGTGAGAAAGCCAACACAAATAAGCAGGCAAGTACCAAAC
AAAACTAGAAGCAGCAAAGCAGTTTTTGCCTTTTTATGCCTCTCGGCAAA
CCTTTTGACTGTCGGAGACTGCAGATTTCTG

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR003855	K+_transporter

Vocabulary: **Molecular Function**
Term	Definition
GO:0015079	potassium ion transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0071805	potassium ion transmembrane transport

Search form

g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum

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