g.arboreum_cottongen_reftransV1_0008826, g.arboreum_cottongen_reftransV1_0008826 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008826
Unique Nameg.arboreum_cottongen_reftransV1_0008826
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr2chromosomeg.arboreum_cottongen_reftransV1_0008826:1..331 .
Chr2:74909857..74910377 +
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0B0N9F9_GOSAR (Potassium transporter 3 OS=Gossypium arboreum GN=F383_09678 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.911e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL
Sbjct:   71 RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 180
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0B0NE23_GOSAR (Potassium transporter 3 OS=Gossypium arboreum GN=F383_09678 PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.270e-55
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL
Sbjct:   87 RNLQSPTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 196
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0D2ML10_GOSRA (Potassium transporter OS=Gossypium raimondii GN=B456_003G084100 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 2.693e-52
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN QS TVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLS AAIGVYNIL
Sbjct:  122 RNPQSLTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSIAAIGVYNIL 231
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0D2QQ85_GOSRA (Potassium transporter OS=Gossypium raimondii GN=B456_003G084100 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.035e-51
Identity = 107/110 (97.27%), Postives = 107/110 (97.27%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN QS TVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLS AAIGVYNIL
Sbjct:  122 RNPQSLTVKRFAERHKKAKTALLLLVLFGTCLLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSIAAIGVYNIL 231
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A061G6R4_THECC (Potassium transporter OS=Theobroma cacao GN=TCM_016366 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.872e-41
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQS + K+FAERHKK KTALLLLVLFGTCL+ICVGFLTPA+S+RS+IEG+KVRS+ LHYGVV++IACILLVGLFVLQHRGTYRVAFMFAPI+ILWSL  AAIG+YNI+
Sbjct:  123 RNLQSSSAKKFAERHKKLKTALLLLVLFGTCLVICVGFLTPAMSVRSSIEGLKVRSNNLHYGVVVVIACILLVGLFVLQHRGTYRVAFMFAPILILWSLCIAAIGLYNII 232
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A061G5M9_THECC (Potassium transporter OS=Theobroma cacao GN=TCM_016366 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.896e-41
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RNLQS + K+FAERHKK KTALLLLVLFGTCL+ICVGFLTPA+S+RS+IEG+KVRS+ LHYGVV++IACILLVGLFVLQHRGTYRVAFMFAPI+ILWSL  AAIG+YNI+
Sbjct:  122 RNLQSSSAKKFAERHKKLKTALLLLVLFGTCLVICVGFLTPAMSVRSSIEGLKVRSNNLHYGVVVVIACILLVGLFVLQHRGTYRVAFMFAPILILWSLCIAAIGLYNII 231
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: B9RCK1_RICCO (Potassium transporter OS=Ricinus communis GN=RCOM_1689440 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.397e-30
Identity = 68/110 (61.82%), Postives = 91/110 (82.73%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN+     K+  ER KK KTALLL+VLFG  ++I +G LTPAIS+ S+IEG++++++ LH+G+V++IACI+L+GLFVLQ+RGT+RVAFMFAPIVILW LS A IG YNI+
Sbjct:  122 RNVAPSQSKKVVERRKKTKTALLLVVLFGASMVIAIGVLTPAISVLSSIEGLQLQANNLHHGMVVLIACIVLIGLFVLQYRGTHRVAFMFAPIVILWLLSIAIIGAYNII 231
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: A0A0A7RTG8_PRUPE (Potassium transporter OS=Prunus persica GN=KUP4 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.129e-28
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = -2 
Query:    1 NLQSPT--VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 327
            N   PT  +K F ERHK A+T LLLLVLFG  ++ICVG LTPAIS+ +++EG+K ++ +LH  VV++IACILLV LFVLQHRG +++AF+F PIVILW L  AA+G+YNI+
Sbjct:   48 NTNRPTSPLKGFIERHKSAQTCLLLLVLFGASMVICVGILTPAISVFASVEGLKFQAKDLHNSVVVLIACILLVALFVLQHRGIHKLAFIFTPIVILWVLLVAAVGIYNII 158
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: M5WDQ0_PRUPE (Potassium transporter (Fragment) OS=Prunus persica GN=PRUPE_ppa022284mg PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.331e-28
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = -2 
Query:    1 NLQSPT--VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 327
            N   PT  +K F ERHK A+T LLLLVLFG  ++ICVG LTPAIS+ +++EG+K ++ +LH  VV++IACILLV LFVLQHRG +++AF+F PIVILW L  AA+G+YNI+
Sbjct:  104 NTNRPTSPLKGFIERHKSAQTCLLLLVLFGASMVICVGILTPAISVFASVEGLKFQAKDLHNSVVVLIACILLVALFVLQHRGIHKLAFIFTPIVILWVLLVAAVGIYNII 214
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Match: B6U7Z6_MAIZE (Potassium transporter OS=Zea mays PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.016e-28
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = -2 
Query:    1 RNLQSPTVKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 330
            RN  SP ++RF E+HKK +T  LL+VL G  ++I  G LTPAIS+ S++ G+ VR++ LH+  V++++CI+LVGLF LQHRGT +VAFMFAPIVI+W LS   IG+YNIL
Sbjct:  133 RNGSSPWLRRFLEKHKKMRTLFLLIVLCGASMVIGDGVLTPAISVLSSMSGLHVRATGLHHSSVVLLSCIVLVGLFALQHRGTQKVAFMFAPIVIIWLLSIGGIGLYNIL 242
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK26_ORYSJ (Potassium transporter 26 OS=Oryza sativa subsp. japonica GN=HAK26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.898e-14
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = -2 
Query:    1 RFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 303
            +F E+  K +  +  +VL GTC+++  G LTPAIS+ SA++G++ RSS +    V++++ I+L  LF  Q  GT +V+F F+PI+ILW    A IG+YNI+
Sbjct:  189 KFLEQSTKWQAVITYIVLAGTCMVLGDGALTPAISVLSAVQGIQSRSSSITQAHVVLLSVIILFILFFFQKHGTSKVSFTFSPIMILWFTFVAFIGLYNII 289
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK4_ORYSJ (Probable potassium transporter 4 OS=Oryza sativa subsp. japonica GN=HAK4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.836e-13
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = -2 
Query:    4 VKRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNI 309
            ++RF E    A+  LLL  + G C+LI  G LTPAIS+ SAI+G++     +    V  ++  +LVGLF+LQ  GT +V+FMF+PI+  W+ +T  IGVY+I
Sbjct:  140 LRRFIESSIIARRLLLLTAILGMCMLIGDGILTPAISVLSAIDGLRGPFPSVSKPAVEGLSAAILVGLFLLQKYGTSKVSFMFSPIMAAWTFATPVIGVYSI 241
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: POT10_ARATH (Potassium transporter 10 OS=Arabidopsis thaliana GN=POT10 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.937e-12
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = -2 
Query:    4 KRFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNI 306
            KR+ E     K ALL+LVL GTC++I  G LTPAIS+ SA  G++V    ++ G+V+++A ++LV LF +QH GT RV ++FAPIV LW L  A+IG++NI
Sbjct:  171 KRWLENGTSRKNALLILVLVGTCMVIGDGILTPAISVLSAAGGLRVNLPHINNGIVVVVAVVILVSLFSVQHYGTDRVGWLFAPIVFLWFLFIASIGMFNI 271
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: KUP1_LEGPA (Probable potassium transport system protein kup 1 OS=Legionella pneumophila (strain Paris) GN=kup1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.453e-12
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = -2 
Query:    1 GFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 222
            G LTPAIS+ SA+EG+   S +L Y  VL IA ++LV LF LQ +GT R+ ++F P++++W ++ A +G+  IL
Sbjct:  111 GMLTPAISVVSAVEGLGTLSDKL-YPYVLPIASLILVLLFSLQAKGTARIGYLFGPLILIWFITIAILGILQIL 183
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Match: HAK17_ORYSJ (Probable potassium transporter 17 OS=Oryza sativa subsp. japonica GN=HAK17 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 2.465e-12
Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = -2 
Query:    1 RFAERHKKAKTAXXXXXXXXXXXLICVGFLTPAISIRSAIEGVKVRSSELHYGVVLIIACILLVGLFVLQHRGTYRVAFMFAPIVILWSLSTAAIGVYNIL 303
            +F E+   A+  LL + + G C+LI  G LTPAIS+ SAI+G++     +   VV  ++  +L+GLF+LQ  GT +V+F+F+PI+  W+ +T  IG+Y+I+
Sbjct:  147 KFFEQSITARRVLLFVAVLGMCMLIGDGILTPAISVLSAIDGIRGPFPTVSKPVVEALSAAILIGLFLLQKYGTSKVSFLFSPIMAAWTFTTPIIGLYSIV 247
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0N9F9_GOSAR1.911e-55100.00Potassium transporter 3 OS=Gossypium arboreum GN=F... [more]
A0A0B0NE23_GOSAR2.270e-55100.00Potassium transporter 3 OS=Gossypium arboreum GN=F... [more]
A0A0D2ML10_GOSRA2.693e-5297.27Potassium transporter OS=Gossypium raimondii GN=B4... [more]
A0A0D2QQ85_GOSRA1.035e-5197.27Potassium transporter OS=Gossypium raimondii GN=B4... [more]
A0A061G6R4_THECC1.872e-4182.73Potassium transporter OS=Theobroma cacao GN=TCM_01... [more]
A0A061G5M9_THECC1.896e-4182.73Potassium transporter OS=Theobroma cacao GN=TCM_01... [more]
B9RCK1_RICCO1.397e-3061.82Potassium transporter OS=Ricinus communis GN=RCOM_... [more]
A0A0A7RTG8_PRUPE1.129e-2860.36Potassium transporter OS=Prunus persica GN=KUP4 PE... [more]
M5WDQ0_PRUPE1.331e-2860.36Potassium transporter (Fragment) OS=Prunus persica... [more]
B6U7Z6_MAIZE2.016e-2857.27Potassium transporter OS=Zea mays PE=2 SV=1[more]

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BLAST of g.arboreum_cottongen_reftransV1_0008826 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
HAK26_ORYSJ6.898e-1442.57Potassium transporter 26 OS=Oryza sativa subsp. ja... [more]
HAK4_ORYSJ9.836e-1344.12Probable potassium transporter 4 OS=Oryza sativa s... [more]
POT10_ARATH1.937e-1250.50Potassium transporter 10 OS=Arabidopsis thaliana G... [more]
KUP1_LEGPA2.453e-1245.95Probable potassium transport system protein kup 1 ... [more]
HAK17_ORYSJ2.465e-1240.59Probable potassium transporter 17 OS=Oryza sativa ... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003855Potassium transporterPFAMPF02705K_transcoord: 7..107
e-value: 6.0E-29
score: 100.9
NoneNo IPR availablePANTHERPTHR30540OSMOTIC STRESS POTASSIUM TRANSPORTERcoord: 1..107
NoneNo IPR availablePANTHERPTHR30540:SF9POTASSIUM TRANSPORTER 4coord: 1..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..87
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..57
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 38..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..108
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availableTMHMMTMhelixcoord: 57..76
NoneNo IPR availableTMHMMTMhelixcoord: 83..105
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008826 ID=g.arboreum_cottongen_reftransV1_0008826; Name=g.arboreum_cottongen_reftransV1_0008826; organism=Gossypium arboreum; type=contig; length=331bp
AAGGATATTGTAAACACCAATAGCCGCAGTGGACAATGACCATAAAATCA
CAATGGGAGCAAACATGAAGGCCACTCTATAGGTGCCACGGTGTTGCAAA
ACAAAGAGGCCAACCAACAAAATACAGGCTATGATAAGCACCACACCATA
ATGCAGTTCGCTTGATCGAACTTTGACCCCTTCAATGGCCGAACGAATGG
AAATTGCCGGCGTGAGAAAGCCAACACAAATAAGCAGGCAAGTACCAAAC
AAAACTAGAAGCAGCAAAGCAGTTTTTGCCTTTTTATGCCTCTCGGCAAA
CCTTTTGACTGTCGGAGACTGCAGATTTCTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR003855K+_transporter
Vocabulary: Molecular Function
TermDefinition
GO:0015079potassium ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0071805potassium ion transmembrane transport