g.arboreum_cottongen_reftransV1_0008718, g.arboreum_cottongen_reftransV1_0008718 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: V4LVI0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10025833mg PE=4 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 1.067e-114 Identity = 162/205 (79.02%), Postives = 181/205 (88.29%), Query Frame = 3 Query: 258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTST 872 +PKIDKSGR SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDK SLL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+VDKWD+HV+ I+K+ P +WK+ PAGRILE SILHLAMSE+ VL TRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD A T T Sbjct: 83 MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKTSLLEYNHMSFGGPPVKTETSEEEDELVRRDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEVAVLETRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDRAATPT 287
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A0A0KWZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G268020 PE=4 SV=1) HSP 1 Score: 351.288 bits (900), Expect = 1.124e-114 Identity = 161/202 (79.70%), Postives = 184/202 (91.09%), Query Frame = 3 Query: 252 EMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDL 857 EM+PK+DKSG+FCSPRAARELAL IVYA+CL+GSDP+RLFEKR+NA RE GYEFDK SL++YNHMSFGGPPVT ++EEADELLR DE+DS IEAE+L+APPK+VYSKL+L FTRKLLVA+ D WD+ L I+KV+P WKN+PAGRILEL ILHLAMSEITV+GTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFVKD+ Sbjct: 166 EMIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDSTIEAEILAAPPKIVYSKLILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI 367
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A078HYI4_BRANA (BnaA03g47980D protein OS=Brassica napus GN=BnaA03g47980D PE=4 SV=1) HSP 1 Score: 344.739 bits (883), Expect = 3.294e-113 Identity = 162/215 (75.35%), Postives = 183/215 (85.12%), Query Frame = 3 Query: 258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEV 902 +PK+DKSGR SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDKA LL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+ DKWD HV+ IDK+ P +WK+ PAGRILE SILHLAMSEI V+ TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFVKD A T A S ++ V Sbjct: 78 MPKVDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKACLLKYNHMSFGGPPVKTETSEEEDELVRHDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVADKWDTHVVIIDKISPPDWKSAPAGRILEFSILHLAMSEIAVIETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRAPTPQALESKQEVSV 292
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A0D3A6K9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 3.122e-112 Identity = 163/217 (75.12%), Postives = 184/217 (84.79%), Query Frame = 3 Query: 258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD--LAGTSTAQTSNSKLEV 902 +PKIDKSGR SPRAARELAL+ +YA+CL+GSDPIRLFEKRINA REPGYEFDK+SLL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+ DKWD+HV+ I+K+ P +WK+ PAGRILE SILHLAMSE+ VL TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFVKD A T T Q K EV Sbjct: 78 MPKIDKSGRLSSPRAARELALVTLYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTETSEEEDELVRHDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVADKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEMAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRSAAATPTPQALKLKQEV 294
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A078E4G9_BRANA (BnaC01g18410D protein OS=Brassica napus GN=BnaC01g18410D PE=4 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 3.836e-112 Identity = 163/217 (75.12%), Postives = 183/217 (84.33%), Query Frame = 3 Query: 258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKD--LAGTSTAQTSNSKLEV 902 +PKIDKSGR SPRAARELAL+ +YA+CL+GSDPIRLFEKRINA REPGYEFDK SLL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+ DKWD+HV+ I+K+ P +WK+ PAGRILE SILHLAMSE+ VL TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFVKD A T T Q K EV Sbjct: 78 MPKIDKSGRLSSPRAARELALVTLYAACLEGSDPIRLFEKRINARREPGYEFDKTSLLEYNHMSFGGPPVKTETSEEEDELVRHDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVADKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEMAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRSAAATPTPQALKLKQEV 294
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Match: NUSB_PEPD6 (N utilization substance protein B homolog OS=Peptoclostridium difficile (strain 630) GN=nusB PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 3.620e-8 Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 645 IDKVVPSNWKNEPAGRI--LELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLA 860 ID+++ + KN R+ +++SIL L++ EI L T + + INEAV+LAK +CD +P+ ING L + V ++ Sbjct: 95 IDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEIG 168 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008718 ID=g.arboreum_cottongen_reftransV1_0008718; Name=g.arboreum_cottongen_reftransV1_0008718; organism=Gossypium arboreum; type=contig; length=1170bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|