g.arboreum_cottongen_reftransV1_0008718, g.arboreum_cottongen_reftransV1_0008718 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: D7SLN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00170 PE=4 SV=1) HSP 1 Score: 379.793 bits (974), Expect = 4.662e-128 Identity = 178/216 (82.41%), Postives = 196/216 (90.74%), Query Frame = 3 Query: 255 MLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEV 902 MLP+IDKSGRFCSPRAARELALLI YA+CL+GSDP+RLFE+R+NA REPGYEFDK SLL+YNHMSFGGPPVTT +VEEADELLR++E++SAIEAEVLSAPPKLVY KL+L FTRKLLVA+VDKW++HVL IDKV P NWKNEPAGRILEL ILHLAMSEI VLGTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFVKDL GT + S + EV Sbjct: 1 MLPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRLFERRMNARREPGYEFDKDSLLEYNHMSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRILELCILHLAMSEIAVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLEGTGITRASETTQEV 216
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A068VCW4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_256 OS=Coffea canephora GN=GSCOC_T00012401001 PE=4 SV=1) HSP 1 Score: 367.851 bits (943), Expect = 1.744e-123 Identity = 172/211 (81.52%), Postives = 191/211 (90.52%), Query Frame = 3 Query: 255 MLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSN 887 MLPKIDKSGRFCSPRAARELALLI+YASCL+GSDP+RLFEKRINA REPGY+FDK SL++YNHMSF GPPVT +++EEADELL D+++S IEAEVLSAPPKLVYSKL+L FTRKLLVA+ +KWD+HV IDKV P NWKNEPA RILELSILHLAMSEI VLGTRH IVINEAVDLAKRFCDGAAPRIINGCLRTF+KDL GTS + S+ Sbjct: 1 MLPKIDKSGRFCSPRAARELALLILYASCLEGSDPVRLFEKRINARREPGYDFDKESLVEYNHMSFAGPPVTANTLEEADELLLHDQKESEIEAEVLSAPPKLVYSKLILRFTRKLLVAVAEKWDSHVFVIDKVAPPNWKNEPAARILELSILHLAMSEIAVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFIKDLQGTSAVKRSS 211
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: M5WJ39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1) HSP 1 Score: 369.777 bits (948), Expect = 6.152e-123 Identity = 173/213 (81.22%), Postives = 194/213 (91.08%), Query Frame = 3 Query: 246 SKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTS 884 S+EMLPKIDKSGRFCSPRAARELAL IVYA+CL+GSDP+RLFEKR+N REPGYEFD+ASLL+YN MSFGGPPVT +VEEADELLR+DE++SAIEAEVL+APPKLVYSKL+L FTRKLLVA++DKWD+HVL IDKV P NWK+EPAGRILEL ILHLAMSEITVL TRHPIVINEAVDLAKRFCDG+APR+INGCLRTFVK + T T+ Sbjct: 83 SREMLPKIDKSGRFCSPRAARELALSIVYAACLEGSDPVRLFEKRMNVRREPGYEFDRASLLEYNPMSFGGPPVTVETVEEADELLRNDEKESAIEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKWDSHVLVIDKVAPPNWKDEPAGRILELCILHLAMSEITVLETRHPIVINEAVDLAKRFCDGSAPRVINGCLRTFVKGIEETGGLTTA 295
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A059D8I6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03588 PE=4 SV=1) HSP 1 Score: 365.54 bits (937), Expect = 4.683e-121 Identity = 176/243 (72.43%), Postives = 202/243 (83.13%), Query Frame = 3 Query: 189 RISLPSMALQVQD-----QQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEV 902 R SL + L V++ + S +KEMLPKIDKSGRFCSPRAARELAL I YA+CL+G DP+RLFEKR+N REPGYEFDKASLL+YNHMSFGGPPV T + EEADEL++ DE++SAIEAEVLSAPPK+VYSKL+L FTRKLLVA++D+WD+HVL IDKV P NWK PAGRILEL IL LAMSEITVLGTRH IVINEAVDLAKRFCDGAAPRIINGCLR+F+KDL T + S K ++ Sbjct: 66 RASLRTSVLAVEEAVERSRGSVAPAKEMLPKIDKSGRFCSPRAARELALSIAYAACLEGFDPVRLFEKRMNMRREPGYEFDKASLLEYNHMSFGGPPVITDTTEEADELMQIDEKESAIEAEVLSAPPKMVYSKLILRFTRKLLVAVMDQWDSHVLVIDKVAPENWKMAPAGRILELCILRLAMSEITVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRSFIKDLEATHSPPASEVKEQI 308
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A061GQJ9_THECC (Antitermination NusB domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_038626 PE=4 SV=1) HSP 1 Score: 360.918 bits (925), Expect = 1.149e-120 Identity = 172/191 (90.05%), Postives = 178/191 (93.19%), Query Frame = 3 Query: 312 LALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTS 884 L LIVYA+CLQGSDPIRLFEKR+NA REPGYEFDKASLLQYNHMSFGGPPVTT S EEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLL FTRKLLVAIVDKWD+HVL IDK+ P NWKNEPAGRILELSILHLAMSE+TVLGTRH IVINEAVDLAKRFCDGAAPR+INGCLRTFVKDLAGT AQ S Sbjct: 29 LGRLIVYAACLQGSDPIRLFEKRVNATREPGYEFDKASLLQYNHMSFGGPPVTTQSAEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLRFTRKLLVAIVDKWDSHVLVIDKIAPLNWKNEPAGRILELSILHLAMSEMTVLGTRHQIVINEAVDLAKRFCDGAAPRVINGCLRTFVKDLAGTGIAQAS 219
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A067EHE1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1) HSP 1 Score: 361.303 bits (926), Expect = 9.623e-120 Identity = 193/298 (64.77%), Postives = 222/298 (74.50%), Query Frame = 3 Query: 63 SSVLSCYYSSKTHF--KLRHQALEHCFXXXXXXXXXXXXXXXKVR-----ISLPSMALQVQD-----QQSFHKS--KEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914 SS LSC SSKTHF LR + + +R R +S + A VQ+ ++S S KEM+PKIDKSGR L+VYA+CL+GSDPIRLFEKR+N+ REPGYEFDK+SLL+YNHMSFGGPPVTT +VEEADELLRSDE++SAIEAEVLSAPPKLVYSKLLL FTRKLLVA+VDKWD HV IDKVVP WK++PAGRILELSILHLAMSEITV+GTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFV++L GT+ + S + EVP +V Sbjct: 7 SSFLSC--SSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGR------------LVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 290
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: K4AV68_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g028870.2 PE=4 SV=1) HSP 1 Score: 356.681 bits (914), Expect = 5.127e-118 Identity = 163/210 (77.62%), Postives = 187/210 (89.05%), Query Frame = 3 Query: 261 PKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNS 890 PKIDKSGRFCSPRAARELAL+ +YA+CL+GSDP+R FEK++N REPGYEFDK L++YNHMSFGGPPV T +VEEADELL++DE DS IEAEVLSAPPKLVYSKL+L FTRKLLVA+ +KWD+HVL I+KV P NWKNEPAGRILELSILHLAMSEI+VLGTRH IV+NEAVDLAKRFCDG+APRI+NGCLRTF+KDL A+ + S Sbjct: 79 PKIDKSGRFCSPRAARELALMTIYAACLEGSDPVRFFEKQLNIRREPGYEFDKDWLMKYNHMSFGGPPVKTETVEEADELLKADENDSVIEAEVLSAPPKLVYSKLILRFTRKLLVAVEEKWDSHVLVINKVAPDNWKNEPAGRILELSILHLAMSEISVLGTRHQIVVNEAVDLAKRFCDGSAPRIVNGCLRTFIKDLEIVKDARVNQS 288
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: M4DRG7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra019110 PE=4 SV=1) HSP 1 Score: 354.369 bits (908), Expect = 5.310e-117 Identity = 166/217 (76.50%), Postives = 187/217 (86.18%), Query Frame = 3 Query: 258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPL 908 +PK+DKSGR SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDK+SLL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+ DKWD HV+ IDK+ P +WK+ PAGRILE SILHLAMSEI V+ TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFVKD A T T Q SK EVP+ Sbjct: 78 MPKVDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLKYNHMSFGGPPVKTETSEEEDELVRHDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVADKWDTHVVIIDKISPPDWKSAPAGRILEFSILHLAMSEIAVIETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRAPTPTPQALESKQEVPV 294
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A087GH06_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G096500 PE=4 SV=1) HSP 1 Score: 352.829 bits (904), Expect = 1.962e-116 Identity = 167/215 (77.67%), Postives = 187/215 (86.98%), Query Frame = 3 Query: 258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEV 902 +PKIDKSGR SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDK+SLL+YNHMSFGGPPV T + EE DELLR DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+VDKWD+HV+ I+K+ P +WK+ PAGRILE SILHLAMSE+ VL TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFVKD A TST Q K EV Sbjct: 73 MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTDTSEEEDELLRHDENESNIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEMAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDKAVTSTPQAVELKQEV 287
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A078DV47_BRANA (BnaC07g40250D protein OS=Brassica napus GN=BnaC07g40250D PE=4 SV=1) HSP 1 Score: 350.132 bits (897), Expect = 2.475e-115 Identity = 163/217 (75.12%), Postives = 185/217 (85.25%), Query Frame = 3 Query: 258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPL 908 +PK+DKSGR SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDK LL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+ DKWD HV+ I+K+ P +WK+ PAGRILE SILHLAMSEI V+ TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFV+D A T T Q SK EVP+ Sbjct: 78 MPKVDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKTCLLKYNHMSFGGPPVKTETSEEEDELVRHDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVADKWDTHVVTIEKISPPDWKSAPAGRILEFSILHLAMSEIAVIKTRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVEDRAATPTPQALESKQEVPV 294
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Match: NUSB_PEPD6 (N utilization substance protein B homolog OS=Peptoclostridium difficile (strain 630) GN=nusB PE=3 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 3.620e-8 Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 645 IDKVVPSNWKNEPAGRI--LELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLA 860 ID+++ + KN R+ +++SIL L++ EI L T + + INEAV+LAK +CD +P+ ING L + V ++ Sbjct: 95 IDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEIG 168 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0008718 ID=g.arboreum_cottongen_reftransV1_0008718; Name=g.arboreum_cottongen_reftransV1_0008718; organism=Gossypium arboreum; type=contig; length=1170bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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