g.arboreum_cottongen_reftransV1_0008718, g.arboreum_cottongen_reftransV1_0008718 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0008718
Unique Nameg.arboreum_cottongen_reftransV1_0008718
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length1170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr3chromosomeg.arboreum_cottongen_reftransV1_0008718:1..1170 .
Chr3:281277..283729 -
Homology
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: D7SLN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00170 PE=4 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 4.662e-128
Identity = 178/216 (82.41%), Postives = 196/216 (90.74%), Query Frame = 3
Query:  255 MLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEV 902
            MLP+IDKSGRFCSPRAARELALLI YA+CL+GSDP+RLFE+R+NA REPGYEFDK SLL+YNHMSFGGPPVTT +VEEADELLR++E++SAIEAEVLSAPPKLVY KL+L FTRKLLVA+VDKW++HVL IDKV P NWKNEPAGRILEL ILHLAMSEI VLGTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFVKDL GT   + S +  EV
Sbjct:    1 MLPRIDKSGRFCSPRAARELALLIAYAACLEGSDPVRLFERRMNARREPGYEFDKDSLLEYNHMSFGGPPVTTETVEEADELLRNNEKESAIEAEVLSAPPKLVYGKLILRFTRKLLVAVVDKWNSHVLVIDKVAPPNWKNEPAGRILELCILHLAMSEIAVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLEGTGITRASETTQEV 216          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A068VCW4_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_256 OS=Coffea canephora GN=GSCOC_T00012401001 PE=4 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 1.744e-123
Identity = 172/211 (81.52%), Postives = 191/211 (90.52%), Query Frame = 3
Query:  255 MLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSN 887
            MLPKIDKSGRFCSPRAARELALLI+YASCL+GSDP+RLFEKRINA REPGY+FDK SL++YNHMSF GPPVT +++EEADELL  D+++S IEAEVLSAPPKLVYSKL+L FTRKLLVA+ +KWD+HV  IDKV P NWKNEPA RILELSILHLAMSEI VLGTRH IVINEAVDLAKRFCDGAAPRIINGCLRTF+KDL GTS  + S+
Sbjct:    1 MLPKIDKSGRFCSPRAARELALLILYASCLEGSDPVRLFEKRINARREPGYDFDKESLVEYNHMSFAGPPVTANTLEEADELLLHDQKESEIEAEVLSAPPKLVYSKLILRFTRKLLVAVAEKWDSHVFVIDKVAPPNWKNEPAARILELSILHLAMSEIAVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFIKDLQGTSAVKRSS 211          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: M5WJ39_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009156mg PE=4 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 6.152e-123
Identity = 173/213 (81.22%), Postives = 194/213 (91.08%), Query Frame = 3
Query:  246 SKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTS 884
            S+EMLPKIDKSGRFCSPRAARELAL IVYA+CL+GSDP+RLFEKR+N  REPGYEFD+ASLL+YN MSFGGPPVT  +VEEADELLR+DE++SAIEAEVL+APPKLVYSKL+L FTRKLLVA++DKWD+HVL IDKV P NWK+EPAGRILEL ILHLAMSEITVL TRHPIVINEAVDLAKRFCDG+APR+INGCLRTFVK +  T    T+
Sbjct:   83 SREMLPKIDKSGRFCSPRAARELALSIVYAACLEGSDPVRLFEKRMNVRREPGYEFDRASLLEYNPMSFGGPPVTVETVEEADELLRNDEKESAIEAEVLAAPPKLVYSKLILRFTRKLLVAVMDKWDSHVLVIDKVAPPNWKDEPAGRILELCILHLAMSEITVLETRHPIVINEAVDLAKRFCDGSAPRVINGCLRTFVKGIEETGGLTTA 295          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A059D8I6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03588 PE=4 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 4.683e-121
Identity = 176/243 (72.43%), Postives = 202/243 (83.13%), Query Frame = 3
Query:  189 RISLPSMALQVQD-----QQSFHKSKEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEV 902
            R SL +  L V++     + S   +KEMLPKIDKSGRFCSPRAARELAL I YA+CL+G DP+RLFEKR+N  REPGYEFDKASLL+YNHMSFGGPPV T + EEADEL++ DE++SAIEAEVLSAPPK+VYSKL+L FTRKLLVA++D+WD+HVL IDKV P NWK  PAGRILEL IL LAMSEITVLGTRH IVINEAVDLAKRFCDGAAPRIINGCLR+F+KDL  T +   S  K ++
Sbjct:   66 RASLRTSVLAVEEAVERSRGSVAPAKEMLPKIDKSGRFCSPRAARELALSIAYAACLEGFDPVRLFEKRMNMRREPGYEFDKASLLEYNHMSFGGPPVITDTTEEADELMQIDEKESAIEAEVLSAPPKMVYSKLILRFTRKLLVAVMDQWDSHVLVIDKVAPENWKMAPAGRILELCILRLAMSEITVLGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRSFIKDLEATHSPPASEVKEQI 308          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A061GQJ9_THECC (Antitermination NusB domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_038626 PE=4 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 1.149e-120
Identity = 172/191 (90.05%), Postives = 178/191 (93.19%), Query Frame = 3
Query:  312 LALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTS 884
            L  LIVYA+CLQGSDPIRLFEKR+NA REPGYEFDKASLLQYNHMSFGGPPVTT S EEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLL FTRKLLVAIVDKWD+HVL IDK+ P NWKNEPAGRILELSILHLAMSE+TVLGTRH IVINEAVDLAKRFCDGAAPR+INGCLRTFVKDLAGT  AQ S
Sbjct:   29 LGRLIVYAACLQGSDPIRLFEKRVNATREPGYEFDKASLLQYNHMSFGGPPVTTQSAEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLRFTRKLLVAIVDKWDSHVLVIDKIAPLNWKNEPAGRILELSILHLAMSEMTVLGTRHQIVINEAVDLAKRFCDGAAPRVINGCLRTFVKDLAGTGIAQAS 219          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A067EHE1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021860mg PE=4 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 9.623e-120
Identity = 193/298 (64.77%), Postives = 222/298 (74.50%), Query Frame = 3
Query:   63 SSVLSCYYSSKTHF--KLRHQALEHCFXXXXXXXXXXXXXXXKVR-----ISLPSMALQVQD-----QQSFHKS--KEMLPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPLQV 914
            SS LSC  SSKTHF   LR  +    +            +R   R     +S  + A  VQ+     ++S   S  KEM+PKIDKSGR            L+VYA+CL+GSDPIRLFEKR+N+ REPGYEFDK+SLL+YNHMSFGGPPVTT +VEEADELLRSDE++SAIEAEVLSAPPKLVYSKLLL FTRKLLVA+VDKWD HV  IDKVVP  WK++PAGRILELSILHLAMSEITV+GTRH IVINEAVDLAKRFCDGAAPRIINGCLRTFV++L GT+  + S +  EVP +V
Sbjct:    7 SSFLSC--SSKTHFLFNLRASSSPSSWKKFTQSANFAAKNRHVCRNERPNVSCSAAAFAVQETLEKTRESVMASSAKEMMPKIDKSGR------------LVVYAACLEGSDPIRLFEKRLNSRREPGYEFDKSSLLEYNHMSFGGPPVTTETVEEADELLRSDEEESAIEAEVLSAPPKLVYSKLLLRFTRKLLVAVVDKWDAHVHIIDKVVPPIWKDQPAGRILELSILHLAMSEITVVGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVRNLEGTANIEASKASKEVPSEV 290          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: K4AV68_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g028870.2 PE=4 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 5.127e-118
Identity = 163/210 (77.62%), Postives = 187/210 (89.05%), Query Frame = 3
Query:  261 PKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNS 890
            PKIDKSGRFCSPRAARELAL+ +YA+CL+GSDP+R FEK++N  REPGYEFDK  L++YNHMSFGGPPV T +VEEADELL++DE DS IEAEVLSAPPKLVYSKL+L FTRKLLVA+ +KWD+HVL I+KV P NWKNEPAGRILELSILHLAMSEI+VLGTRH IV+NEAVDLAKRFCDG+APRI+NGCLRTF+KDL     A+ + S
Sbjct:   79 PKIDKSGRFCSPRAARELALMTIYAACLEGSDPVRFFEKQLNIRREPGYEFDKDWLMKYNHMSFGGPPVKTETVEEADELLKADENDSVIEAEVLSAPPKLVYSKLILRFTRKLLVAVEEKWDSHVLVINKVAPDNWKNEPAGRILELSILHLAMSEISVLGTRHQIVVNEAVDLAKRFCDGSAPRIVNGCLRTFIKDLEIVKDARVNQS 288          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: M4DRG7_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra019110 PE=4 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 5.310e-117
Identity = 166/217 (76.50%), Postives = 187/217 (86.18%), Query Frame = 3
Query:  258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPL 908
            +PK+DKSGR  SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDK+SLL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+ DKWD HV+ IDK+ P +WK+ PAGRILE SILHLAMSEI V+ TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFVKD A T T Q   SK EVP+
Sbjct:   78 MPKVDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLKYNHMSFGGPPVKTETSEEEDELVRHDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVADKWDTHVVIIDKISPPDWKSAPAGRILEFSILHLAMSEIAVIETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRAPTPTPQALESKQEVPV 294          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A087GH06_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G096500 PE=4 SV=1)

HSP 1 Score: 352.829 bits (904), Expect = 1.962e-116
Identity = 167/215 (77.67%), Postives = 187/215 (86.98%), Query Frame = 3
Query:  258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEV 902
            +PKIDKSGR  SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDK+SLL+YNHMSFGGPPV T + EE DELLR DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+VDKWD+HV+ I+K+ P +WK+ PAGRILE SILHLAMSE+ VL TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFVKD A TST Q    K EV
Sbjct:   73 MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEYNHMSFGGPPVKTDTSEEEDELLRHDENESNIEAEVLSAPPKLVYSKLVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAGRILEFSILHLAMSEMAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDKAVTSTPQAVELKQEV 287          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Match: A0A078DV47_BRANA (BnaC07g40250D protein OS=Brassica napus GN=BnaC07g40250D PE=4 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 2.475e-115
Identity = 163/217 (75.12%), Postives = 185/217 (85.25%), Query Frame = 3
Query:  258 LPKIDKSGRFCSPRAARELALLIVYASCLQGSDPIRLFEKRINAAREPGYEFDKASLLQYNHMSFGGPPVTTHSVEEADELLRSDEQDSAIEAEVLSAPPKLVYSKLLLSFTRKLLVAIVDKWDNHVLAIDKVVPSNWKNEPAGRILELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLAGTSTAQTSNSKLEVPL 908
            +PK+DKSGR  SPRAARELAL+I+YA+CL+GSDPIRLFEKRINA REPGYEFDK  LL+YNHMSFGGPPV T + EE DEL+R DE +S IEAEVLSAPPKLVYSKL+L F +KLL A+ DKWD HV+ I+K+ P +WK+ PAGRILE SILHLAMSEI V+ TRHPIVINEAVDLAKRFCDG+APRIINGCLRTFV+D A T T Q   SK EVP+
Sbjct:   78 MPKVDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKTCLLKYNHMSFGGPPVKTETSEEEDELVRHDENESKIEAEVLSAPPKLVYSKLVLRFAKKLLAAVADKWDTHVVTIEKISPPDWKSAPAGRILEFSILHLAMSEIAVIKTRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVEDRAATPTPQALESKQEVPV 294          
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Match: NUSB_PEPD6 (N utilization substance protein B homolog OS=Peptoclostridium difficile (strain 630) GN=nusB PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 3.620e-8
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  645 IDKVVPSNWKNEPAGRI--LELSILHLAMSEITVLGTRHPIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDLA 860
            ID+++  + KN    R+  +++SIL L++ EI  L T + + INEAV+LAK +CD  +P+ ING L + V ++ 
Sbjct:   95 IDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSPKFINGILGSVVDEIG 168          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
D7SLN6_VITVI4.662e-12882.41Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A068VCW4_COFCA1.744e-12381.52Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
M5WJ39_PRUPE6.152e-12381.22Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]
A0A059D8I6_EUCGR4.683e-12172.43Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
A0A061GQJ9_THECC1.149e-12090.05Antitermination NusB domain-containing protein iso... [more]
A0A067EHE1_CITSI9.623e-12064.77Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
K4AV68_SOLLC5.127e-11877.62Uncharacterized protein OS=Solanum lycopersicum GN... [more]
M4DRG7_BRARP5.310e-11776.50Uncharacterized protein OS=Brassica rapa subsp. pe... [more]
A0A087GH06_ARAAL1.962e-11677.67Uncharacterized protein OS=Arabis alpina GN=AALP_A... [more]
A0A078DV47_BRANA2.475e-11575.12BnaC07g40250D protein OS=Brassica napus GN=BnaC07g... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0008718 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUSB_PEPD63.620e-839.19N utilization substance protein B homolog OS=Pepto... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006027NusB/RsmB/TIM44PFAMPF01029NusBcoord: 176..269
e-value: 5.1E-12
score: 46.1
IPR006027NusB/RsmB/TIM44GENE3D1.10.940.10coord: 81..124
e-value: 1.2E-23
score: 82.9
coord: 182..271
e-value: 1.2E-23
score: 82.9
IPR006027NusB/RsmB/TIM44SUPERFAMILY48013NusB-likecoord: 82..117
coord: 175..271
IPR011605NusB antitermination factorPANTHERPTHR11078N UTILIZATION SUBSTANCE PROTEIN B-RELATEDcoord: 14..285

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0008718 ID=g.arboreum_cottongen_reftransV1_0008718; Name=g.arboreum_cottongen_reftransV1_0008718; organism=Gossypium arboreum; type=contig; length=1170bp
GAAGTAGAAGATAGAAGAGTGAGAGCAGCCAGCAAAAGAGAAACATGGAG
GGAATACGGTGTAGCAGCGTTTTAAGCTGTTACTACTCTTCTAAAACCCA
TTTCAAATTACGCCATCAAGCGTTGGAACATTGCTTTTTGAGCTTGCCGC
CACCGCCGCCTCGGCACCCTGCAAGCCGCCCCAAAGTTCGAATTTCACTC
CCTTCCATGGCGCTTCAGGTCCAAGACCAACAATCTTTTCATAAATCCAA
AGAAATGCTCCCAAAAATAGACAAAAGTGGCCGCTTTTGCAGTCCAAGAG
CCGCCCGGGAGCTTGCTTTATTAATAGTTTATGCCTCGTGTTTGCAAGGG
TCGGACCCTATTAGGCTGTTTGAGAAGCGAATTAATGCAGCCAGAGAACC
TGGCTATGAATTTGACAAGGCTTCGTTATTGCAATACAACCACATGAGCT
TCGGAGGGCCTCCGGTCACTACACATTCTGTTGAAGAAGCAGATGAGCTT
TTACGCAGCGATGAGCAGGATTCCGCCATTGAGGCAGAAGTTCTTTCGGC
GCCTCCAAAGTTGGTGTACAGCAAGCTTCTTTTGAGTTTCACAAGGAAGC
TTTTGGTTGCAATTGTGGACAAATGGGACAATCATGTTCTTGCTATTGAT
AAAGTTGTGCCATCAAATTGGAAGAATGAGCCAGCTGGTAGGATTTTGGA
GCTTAGTATTCTTCACTTAGCAATGTCAGAGATAACCGTTCTCGGAACCC
GGCACCCAATTGTCATTAACGAGGCTGTTGATCTTGCGAAACGATTCTGT
GATGGGGCGGCTCCACGAATAATCAACGGGTGCCTACGGACTTTTGTGAA
GGATCTTGCCGGGACCAGCACGGCTCAGACCTCAAACTCAAAACTGGAAG
TGCCTCTTCAAGTATGAAAGTTAGTTCATTTAAGGCTATTTCTTGCTTTT
TATAGATCTCTGGGTTGCCACATCACAATGGTTTAGTCTCTGAGTAATGT
AATCTTCAGCTCATTTGAGTGCTTATAAAGGACTGAGTTATAGCATAGAA
AGATGCAGAGAATTAAAAAAACAGATAAATTGTGGCAACGATCAAAATAT
TTGACAGCTGAAGAATTTTGTATATGATTATGCTGTAGTTAGAATCTTTA
CATGTAAAACATAAAATGAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR006027NusB_RsmB_TIM44
IPR011605NusB_fam
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of DNA-templated transcription
GO:0006353DNA-templated transcription termination